Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Reverse (-)

66395067 .. 66397568

Gene Structure 2502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020577

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAACATGCCAAATGCTCCCAAAGTTCGTGACATGCTCTCCTTTAGTGTTCTGACTCCTTATTACAAAGAAGATGTTCTTTATTCTGATGAGGAACTTACCAAGGAAAATGAGGATGGAATCTCAATTTTGTTCTACCTGCAGAAGATATATCCTGATGAATGGACAAATTTCCTGGACCGCATAAATGAACATAACAGTCAGTACACTGAAAAGGACAAGTCGGAGTTAATTCGTCAGTGGGTATCTTACAGGGGACAGACACTTTCTAGAACAGTGAGAGGGATGATGTATTATAGGAAGGCTCTAGACCTTCAATGTATCCTGGAAACAGCAGGAGATGATGGTGTTTATGGAGGCGACGCATCCCAGATTTTAAGTGAAAAAGATGAGAAGGATATTCTTGATCGGGCACAGGCTCTGGCAGATTTGAAGTTCACTTATGTAGTTTCTTGTCAGGTCTATGGTGAACAGAAGAATTCCACTGAAGCCCGAGACAAAAGTTGTTACACTAATATTCTCAAGCTGATGTTAACGTATCATTCTCTACGTGTTGCTTACATAGATACAAGAGAGGAGACAGTGAATGGAAAATCCCAAAAGATTCATTTTTCTGTTCTGGTCAAGGGAGGTGACAAATGGGATGAGGAAATATACCGCATCAAGCTTCCAGGTCCTCCAACAGTAATTGGTGAAGGAAAACCTGAAAATCAAAACCATGCCATCGTATTTACTCGTGGAGAAGCCCTGCAAACCATTGACATGAATCAGGATAATTATTTTGAGGAAGCTTTCAAAATGAGAAATGTATTGGAGGAATTTCTAAAGCCTCGACGGGGGCAGCGGAAACCTACAATATTGGGTCTAAGGGAACATATATTTACAGGAAGTGTTTCATCACTCGCTTGGTTCATGTCCAATCAAGAGACAAGTTTTGTGACTATAGGCCAACGAATTTTGGCAAATCCGCTGAGGTATGCCTTAAATTTTTCATTCAACTTGAGCTACAGTTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003843 GO:0006810 GO:0008150 GO:0008194 GO:0010232 GO:0010233 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0033036 GO:0033037 GO:0035251 GO:0046527 GO:0051179 GO:0051234 GO:0052545 GO:0080165

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

340

Amino Acids

39.23

Weight (kDa)

5.58

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	1 - 73	8.9e-20	1,3-beta-glucan synthase component
Glucan_synthase	PF02364	75 - 325	2.4e-74	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AciI	CCGC	4 cut(s)	181, 658, 844, 968
AcsI	RAATTY	5 cut(s)	169, 478, 818, 954, 985
AcuI	CTGAAG	1 cut(s)	507
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	836
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	317, 433, 796, 997
AjnI	CCWGG	3 cut(s)	174, 324, 670
AluBI	AGCT	4 cut(s)	526, 667, 791, 1005
AluI	AGCT	4 cut(s)	526, 667, 791, 1005
Alw26I	GTCTC	3 cut(s)	489, 572, 920
AlwNI	CAGNNNCTG	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	1 cut(s)	946
ApeKI	GCWGC	1 cut(s)	841
ApoI	RAATTY	5 cut(s)	169, 478, 818, 954, 985
Asp700I	GAANNNNTTC	2 cut(s)	75, 892
AspS9I	GGNCC	2 cut(s)	178, 674
AsuHPI	GGTGA	3 cut(s)	479, 644, 704
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	2 cut(s)	178, 674
BaeGI	GKGCMC	1 cut(s)	415
BauI	CACGAG	1 cut(s)	735
BbvCI	CCTCAGC	1 cut(s)	971
BbvI	GCAGC	1 cut(s)	853
BccI	CCATC	3 cut(s)	110, 338, 731
BciT130I	CCWGG	3 cut(s)	176, 326, 672
BciVI	GTATCC	1 cut(s)	332
BcoDI	GTCTC	3 cut(s)	489, 572, 920
BfaI	CTAG	2 cut(s)	270, 308
BfmI	CTRYAG	3 cut(s)	140, 942, 1006
BfuAI	ACCTGC	1 cut(s)	147
BfuI	GTATCC	1 cut(s)	332
BisI	GCNGC	1 cut(s)	842
BlsI	GCNGC	1 cut(s)	843
Bme1390I	CCNGG	3 cut(s)	176, 326, 672
Bme18I	GGWCC	2 cut(s)	178, 674
BmeT110I	CYCGRG	1 cut(s)	492
BmgT120I	GGNCC	2 cut(s)	178, 674
BmrFI	CCNGG	3 cut(s)	176, 326, 672
BmsI	GCATC	2 cut(s)	374, 669
Bpu10I	CCTNAGC	1 cut(s)	971
BpuEI	CTTGAG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	551
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	23, 53
Bsc4I	CCNNNNNNNGG	1 cut(s)	836
BseBI	CCWGG	3 cut(s)	176, 326, 672
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	4 cut(s)	121, 291, 365, 649
BseLI	CCNNNNNNNGG	1 cut(s)	836
BseMII	CTCAG	1 cut(s)	962
BseRI	GAGGAG	1 cut(s)	590
BseSI	GKGCMC	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	853
BshFI	GGCC	1 cut(s)	948
BsiHKCI	CYCGRG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	1 cut(s)	836
BsmAI	GTCTC	3 cut(s)	489, 572, 920
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	948
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	415
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	4 cut(s)	181, 658, 844, 968
BspANI	GGCC	1 cut(s)	948
BspCNI	CTCAG	1 cut(s)	963
BspMAI	CTGCAG	1 cut(s)	144
BspMI	ACCTGC	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	406
BssSI	CACGAG	1 cut(s)	735
BssT1I	CCWWGG	1 cut(s)	102
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	3 cut(s)	176, 326, 672
Bst4CI	ACNGT	5 cut(s)	200, 277, 583, 685, 1010
BstBAI	YACGTR	1 cut(s)	551
BstDEI	CTNAG	2 cut(s)	866, 971
BstF5I	GGATG	4 cut(s)	121, 291, 365, 649
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	3 cut(s)	489, 572, 920
BstMBI	GATC	1 cut(s)	406
BstNI	CCWGG	3 cut(s)	176, 326, 672
BstNSI	RCATGY	2 cut(s)	10, 37
BstSCI	CCNGG	3 cut(s)	174, 324, 670
BstSFI	CTRYAG	3 cut(s)	140, 942, 1006
BstSLI	GKGCMC	1 cut(s)	415
BstV1I	GCAGC	1 cut(s)	853
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	948
BtsCI	GGATG	4 cut(s)	121, 291, 365, 649
BtsIMutI	CAGTG	5 cut(s)	207, 245, 282, 483, 588
BveI	ACCTGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	2 cut(s)	178, 674
CseI	GACGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	5 cut(s)	7, 34, 719, 763, 913
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	2 cut(s)	866, 971
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	178, 674
Eco57I	CTGAAG	1 cut(s)	507
Eco88I	CYCGRG	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	3 cut(s)	174, 324, 670
EcoT14I	CCWWGG	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	5 cut(s)	10, 37, 722, 766, 916
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	5 cut(s)	6, 33, 718, 762, 912
Fnu4HI	GCNGC	1 cut(s)	842
FokI	GGATG	4 cut(s)	128, 298, 352, 656
Fsp4HI	GCNGC	1 cut(s)	842
FspBI	CTAG	2 cut(s)	270, 308
GluI	GCNGC	1 cut(s)	842
HaeIII	GGCC	1 cut(s)	948
HgaI	GACGC	1 cut(s)	371
Hin1II	CATG	5 cut(s)	10, 37, 722, 766, 916
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HindIII	AAGCTT	2 cut(s)	665, 789
HinfI	GANTC	4 cut(s)	55, 120, 604, 766
HpaI	GTTAAC	1 cut(s)	534
HphI	GGTGA	3 cut(s)	479, 644, 704
Hpy166II	GTNNAC	4 cut(s)	207, 438, 470, 534
Hpy188I	TCNGA	3 cut(s)	54, 88, 226
Hpy188III	TCNNGA	7 cut(s)	29, 155, 270, 308, 404, 770, 923
Hpy8I	GTNNAC	4 cut(s)	207, 438, 470, 534
Hpy99I	CGWCG	2 cut(s)	365, 837
HpyAV	CCTTC	4 cut(s)	295, 323, 388, 689
HpyCH4III	ACNGT	5 cut(s)	200, 277, 583, 685, 1010
HpyCH4IV	ACGT	2 cut(s)	536, 550
HpyCH4V	TGCA	2 cut(s)	142, 751
HpyF3I	CTNAG	2 cut(s)	866, 971
HpySE526I	ACGT	2 cut(s)	536, 550
Hsp92II	CATG	5 cut(s)	10, 37, 722, 766, 916
KspAI	GTTAAC	1 cut(s)	534
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	1 cut(s)	853
LweI	GCATC	2 cut(s)	374, 669
MaeI	CTAG	2 cut(s)	270, 308
MaeII	ACGT	2 cut(s)	536, 550
MaeIII	GTNAC	4 cut(s)	29, 506, 632, 937
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	3 cut(s)	83, 157, 487
MhlI	GDGCHC	1 cut(s)	415
MluCI	AATT	9 cut(s)	126, 169, 231, 478, 687, 775, 818, 954, 985
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	204, 704
MroXI	GAANNNNTTC	2 cut(s)	75, 892
MseI	TTAA	5 cut(s)	230, 377, 533, 983, 1018
MslI	CAYNNNNRTG	1 cut(s)	761
MspA1I	CMGCKG	2 cut(s)	844, 970
MspR9I	CCNGG	3 cut(s)	176, 326, 672
MvaI	CCWGG	3 cut(s)	176, 326, 672
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	5 cut(s)	10, 37, 722, 766, 916
NmuCI	GTSAC	3 cut(s)	29, 632, 937
NspI	RCATGY	2 cut(s)	10, 37
PdmI	GAANNNNTTC	2 cut(s)	75, 892
PfeI	GAWTC	3 cut(s)	120, 604, 766
PfoI	TCCNGGA	2 cut(s)	174, 324
PkrI	GCNGC	1 cut(s)	843
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	551
PpuMI	RGGWCCY	1 cut(s)	674
Psp5II	RGGWCCY	1 cut(s)	674
Psp6I	CCWGG	3 cut(s)	174, 324, 670
PspGI	CCWGG	3 cut(s)	174, 324, 670
PspPI	GGNCC	2 cut(s)	178, 674
PspPPI	RGGWCCY	1 cut(s)	674
PstI	CTGCAG	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	421
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	761
SaqAI	TTAA	5 cut(s)	230, 377, 533, 983, 1018
SatI	GCNGC	1 cut(s)	842
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	2 cut(s)	178, 674
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	3 cut(s)	176, 326, 672
SduI	GDGCHC	1 cut(s)	415
SfaNI	GCATC	2 cut(s)	374, 669
SfcI	CTRYAG	3 cut(s)	140, 942, 1006
SinI	GGWCC	2 cut(s)	178, 674
SmiMI	CAYNNNNRTG	1 cut(s)	761
SmlI	CTYRAG	2 cut(s)	521, 1000
SmoI	CTYRAG	2 cut(s)	521, 1000
Sse9I	AATT	9 cut(s)	126, 169, 231, 478, 687, 775, 818, 954, 985
SsiI	CCGC	4 cut(s)	181, 658, 844, 968
SspI	AATATT	2 cut(s)	517, 858
SspMI	CTAG	2 cut(s)	270, 308
StyD4I	CCNGG	3 cut(s)	174, 324, 670
StyI	CCWWGG	1 cut(s)	102
TaaI	ACNGT	5 cut(s)	200, 277, 583, 685, 1010
TaiI	ACGT	2 cut(s)	539, 553
TaqI	TCGA	1 cut(s)	832
TasI	AATT	9 cut(s)	126, 169, 231, 478, 687, 775, 818, 954, 985
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	120, 604, 766
Tru1I	TTAA	5 cut(s)	230, 377, 533, 983, 1018
Tru9I	TTAA	5 cut(s)	230, 377, 533, 983, 1018
TscAI	CASTG	5 cut(s)	214, 245, 282, 490, 588
TseFI	GTSAC	3 cut(s)	29, 632, 937
TseI	GCWGC	1 cut(s)	841
Tsp45I	GTSAC	3 cut(s)	29, 632, 937
TspDTI	ATGAA	8 cut(s)	17, 174, 204, 596, 779, 885, 901, 981
TspRI	CASTG	5 cut(s)	214, 245, 282, 490, 588
VpaK11BI	GGWCC	2 cut(s)	178, 674
XapI	RAATTY	5 cut(s)	169, 478, 818, 954, 985
XbaI	TCTAGA	2 cut(s)	269, 307
XceI	RCATGY	2 cut(s)	10, 37
XmnI	GAANNNNTTC	2 cut(s)	75, 892
XspI	CTAG	2 cut(s)	270, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.