pycom09g16470

callose synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
16766937 .. 16768765
1829 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g16470.2

Sequence Viewer

Length: 1737 bp
ATGAACCAAGACAATTATTTTGAGGAGGCGCTCAAAATGCGGAATCTATTAGAAGAATACAGGCGCTATTATGGCATCCGGAAGCCTACTATCTTGGGAGTCAGGGAGCATATTTTTACTGGTTCTGTCTCATCACTTGCTTGGTTTATGTCAGCTCAGGAAACAAGCTTTGTCACCTTGGGACAACGGGTGCTCGCAAACCCTTTGAAAATTAGAATGCATTATGGTCATCCAGATGTGTTTGACCGATTTTGGTTTATGACTCGAGGTGGCCTCAGTAAAGCTTCCAGGGTCATTAACATCAGCGAAGACATTTTTGCTGGCTTTAATTGCACGTTGCGGGGTGGAAACGTCACACACCATGAATACATTCAAGTCGGCAAGGGAAGGGATGTTGGATTCAATCAAGTTTCCATGTTTGAGGCCAAAGTTGCTAGTGGGAATGGGGAGCAAGTTCTCAGCAGAGATGTCTATAGGTTGGGTCACAGGCTAGATTTCTTGCGGATGCTATCATTCTTTTATACTACAGTTGGATTCTTTTTTAATACAATGGTTGTTGTTCTTACTGTGTATGCATTTCTATGGGGCCGGCTTTATCTGGCTCTTAGTGGTCTTGAAGGTTCTATTTTAGAAAATGATTCTAGTAACAGAGCGCTCGCTACAGTCTTGAATCAGCAGTTCATTATCCAACTTGGTGTGTTTACTGCCCTTCCAATGATAGTGGAGAATTCCCTTGAGCATGGATTCCTTAATGCTATTTGGGATTTCTTGACAATGCAGCTCCAGCTTTCATCAGTTTTCTACACATTCTCAATGGGAACTCGTACCCACTTTTTTGGGCGAACTATTCTTCATGGTGGTGCAAAGTATCGTGCAACTGGACGTGGCTTTGTTGTGCAGCACAAGAGTTTTGCAGAGAATTATAGGCTCTATGCTCGTAGTCATTTTGTGAAAGCAATTGAACTTGGGTTGATACTTATTGTTTATGCATCACATAGTCCTGTAGCTAAGGACACTTTTATTTACATTGCCATGACCATCACGAGTTGGTTTCTGGTCATGTCATGGTTTATGGCCCCTTTCGTTTTCAATCCTTCTGGCTTTGATTGGTTGAAGACTGTAGATGACTTTGATGACTTCATGAACTGGATTTGGTATCGTGGCAGTGTCTTCGCGAAAGCTGAACAGAGTTGGGAAAGATGGTGGTATGAGGAGCAGGATCGATCTAAGAACTACTGGCCTTTGGGGAAAGTTTGTAGAGATAATTTTAGACCTCCGCTTCTTCTTTTTCCAATATGGGGTTGTATACCACATATGCTCGGGACAGATATGCCGCAAAACGATCACATTTACTATCGGATGGTGCAATTTCTTGTCATTAAACTTGCATTACTTGTTATCATTGCCCTGTTGGAATTCACCGAGTTCAAGTTCATAGATATTTTCACTAGTCTTCTGGCATTCATTCCAACTGGGTGGGGATTGTTATTGATAGCACAAGTATTTCGGCCCTGTCTACAGCGCACTATACTGTGGGCGGTGATTGTTTCTGTGGCTCGACTATATGATATATTGTTTGGGGTGATTGTAATGACACCTGTGGCAGTATTATCATGGTTTCCTGGTTTTCAGTCTATGCAGACTAGGATATTGTTTAATGAAGCATTCAGCCGGGGCCTTCGTATATTCCAGATTGTTATGGGAAAAAATTCCAAATCAGATAAGGTAAATATTTAA

Protein Analysis

579

Amino Acids

66.96

Weight (kDa)

9.26

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 1306, 1516
AccII CGCG 1 cut(s) 1175
AccIII TCCGGA 1 cut(s) 78
AciI CCGC 6 cut(s) 40, 340, 502, 1277, 1334, 1538
AclWI GGATC 1 cut(s) 1227
AcsI RAATTY 3 cut(s) 727, 1415, 1708
AfaI GTAC 1 cut(s) 826
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 1 cut(s) 1298
AgsI TTSAA 9 cut(s) 208, 374, 403, 617, 670, 962, 1090, 1114, 1429
AhlI ACTAGT 1 cut(s) 1448
AjiI CACGTC 1 cut(s) 884
AjnI CCWGG 2 cut(s) 287, 1621
AluBI AGCT 7 cut(s) 155, 168, 284, 781, 787, 1007, 1181
AluI AGCT 7 cut(s) 155, 168, 284, 781, 787, 1007, 1181
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 1227
Ama87I CYCGRG 2 cut(s) 264, 1319
Aor13HI TCCGGA 1 cut(s) 78
Aor51HI AGCGCT 1 cut(s) 654
AoxI GGCC 7 cut(s) 271, 423, 586, 1074, 1238, 1508, 1675
ApeKI GCWGC 2 cut(s) 778, 898
ApoI RAATTY 3 cut(s) 727, 1415, 1708
ArsI GACNNNNNNTTYG 1 cut(s) 34
Asp700I GAANNNNTTC 2 cut(s) 369, 1708
AspLEI GCGC 4 cut(s) 31, 66, 655, 1524
AspS9I GGNCC 4 cut(s) 586, 1075, 1509, 1675
AsuC2I CCSGG 1 cut(s) 1673
AsuHPI GGTGA 4 cut(s) 166, 1411, 1552, 1594
AvaI CYCGRG 2 cut(s) 264, 1319
BauI CACGAG 1 cut(s) 1042
BbsI GAAGAC 4 cut(s) 315, 1121, 1162, 1445
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 790, 910
BccI CCATC 3 cut(s) 1046, 1194, 1354
BcgI CGANNNNNNTGC 2 cut(s) 1153, 1187
BciT130I CCWGG 2 cut(s) 289, 1623
BcnI CCSGG 1 cut(s) 1673
BcoDI GTCTC 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 1448
BfaI CTAG 5 cut(s) 435, 491, 642, 1449, 1644
BfmI CTRYAG 6 cut(s) 472, 525, 660, 1002, 1119, 1517
BfoI RGCGCY 3 cut(s) 32, 67, 656
BisI GCNGC 3 cut(s) 779, 899, 1334
BlsI GCNGC 3 cut(s) 780, 900, 1335
Bme1390I CCNGG 3 cut(s) 289, 1623, 1673
BmeT110I CYCGRG 2 cut(s) 264, 1319
BmgBI CACGTC 1 cut(s) 884
BmgT120I GGNCC 4 cut(s) 586, 1075, 1509, 1675
BmiI GGNNCC 3 cut(s) 587, 1077, 1676
BmrFI CCNGG 3 cut(s) 289, 1623, 1673
BmrI ACTGGG 1 cut(s) 1482
BmsI GCATC 3 cut(s) 84, 495, 998
BmuI ACTGGG 1 cut(s) 1482
BpiI GAAGAC 4 cut(s) 315, 1121, 1162, 1445
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BpmI CTGGAG 1 cut(s) 767
Bpu10I CCTNAGC 2 cut(s) 156, 1008
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 1673
Bsa29I ATCGAT 1 cut(s) 1222
BsaJI CCNNGG 3 cut(s) 177, 288, 1672
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 1298
Bse118I RCCGGY 1 cut(s) 588
Bse1I ACTGG 5 cut(s) 124, 883, 1151, 1241, 1477
Bse3DI GCAATG 2 cut(s) 1026, 1401
BseAI TCCGGA 1 cut(s) 78
BseBI CCWGG 2 cut(s) 289, 1623
BseCI ATCGAT 1 cut(s) 1222
BseDI CCNNGG 3 cut(s) 177, 288, 1672
BseGI GGATG 5 cut(s) 75, 229, 397, 510, 1365
BseLI CCNNNNNNNGG 1 cut(s) 1298
BseMI GCAATG 2 cut(s) 1026, 1401
BseMII CTCAG 3 cut(s) 170, 289, 472
BseNI ACTGG 5 cut(s) 124, 883, 1151, 1241, 1477
BseRI GAGGAG 2 cut(s) 38, 1226
BseXI GCAGC 2 cut(s) 790, 910
BsgI GTGCAG 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 1175
BshFI GGCC 7 cut(s) 273, 425, 588, 1076, 1240, 1510, 1677
BshVI ATCGAT 1 cut(s) 1222
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 2 cut(s) 264, 1319
BsiSI CCGG 3 cut(s) 79, 589, 1672
BslFI GGGAC 2 cut(s) 195, 1336
BslI CCNNNNNNNGG 1 cut(s) 1298
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 195, 1336
BsmI GAATGC 3 cut(s) 222, 1460, 1664
BsnI GGCC 7 cut(s) 273, 425, 588, 1076, 1240, 1510, 1677
BsoBI CYCGRG 2 cut(s) 264, 1319
Bsp1286I GDGCHC 1 cut(s) 195
Bsp13I TCCGGA 1 cut(s) 78
Bsp143I GATC 3 cut(s) 1219, 1223, 1342
Bsp68I TCGCGA 1 cut(s) 1175
BspACI CCGC 6 cut(s) 40, 340, 502, 1277, 1334, 1538
BspANI GGCC 7 cut(s) 273, 425, 588, 1076, 1240, 1510, 1677
BspCNI CTCAG 3 cut(s) 169, 288, 471
BspDI ATCGAT 1 cut(s) 1222
BspEI TCCGGA 1 cut(s) 78
BspFNI CGCG 1 cut(s) 1175
BspHI TCATGA 1 cut(s) 1140
BspLI GGNNCC 3 cut(s) 587, 1077, 1676
BspPI GGATC 1 cut(s) 1227
BsrDI GCAATG 2 cut(s) 1026, 1401
BsrFI RCCGGY 1 cut(s) 588
BsrI ACTGG 5 cut(s) 124, 883, 1151, 1241, 1477
BssAI RCCGGY 1 cut(s) 588
BssECI CCNNGG 3 cut(s) 177, 288, 1672
BssMI GATC 3 cut(s) 1219, 1223, 1342
BssNAI GTATAC 1 cut(s) 1307
BssSI CACGAG 1 cut(s) 1042
BssT1I CCWWGG 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 1307
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 2 cut(s) 289, 1623
Bst4CI ACNGT 5 cut(s) 529, 568, 664, 1120, 1533
BstC8I GCNNGC 4 cut(s) 195, 322, 590, 657
BstDEI CTNAG 6 cut(s) 156, 275, 458, 605, 1008, 1227
BstF5I GGATG 5 cut(s) 75, 229, 397, 510, 1365
BstFNI CGCG 1 cut(s) 1175
BstH2I RGCGCY 3 cut(s) 32, 67, 656
BstHHI GCGC 4 cut(s) 31, 66, 655, 1524
BstKTI GATC 3 cut(s) 1222, 1226, 1345
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 1219, 1223, 1342
BstMWI GCNNNNNNNGC 5 cut(s) 37, 72, 330, 431, 784
BstNI CCWGG 2 cut(s) 289, 1623
BstSCI CCNGG 3 cut(s) 287, 1621, 1671
BstSFI CTRYAG 6 cut(s) 472, 525, 660, 1002, 1119, 1517
BstUI CGCG 1 cut(s) 1175
BstV1I GCAGC 2 cut(s) 790, 910
BstV2I GAAGAC 4 cut(s) 315, 1121, 1162, 1445
BstXI CCANNNNNNTGG 2 cut(s) 836, 1476
BstZ17I GTATAC 1 cut(s) 1307
Bsu15I ATCGAT 1 cut(s) 1222
BsuRI GGCC 7 cut(s) 273, 425, 588, 1076, 1240, 1510, 1677
BsuTUI ATCGAT 1 cut(s) 1222
BtrI CACGTC 1 cut(s) 884
BtsCI GGATG 5 cut(s) 75, 229, 397, 510, 1365
BtsI GCAGTG 1 cut(s) 1171
BtsIMutI CAGTG 1 cut(s) 1171
BtuMI TCGCGA 1 cut(s) 1175
Cac8I GCNNGC 4 cut(s) 195, 322, 590, 657
CciI TCATGA 1 cut(s) 1140
CfoI GCGC 4 cut(s) 31, 66, 655, 1524
Cfr10I RCCGGY 1 cut(s) 588
Cfr13I GGNCC 4 cut(s) 586, 1075, 1509, 1675
ClaI ATCGAT 1 cut(s) 1222
Csp6I GTAC 1 cut(s) 825
CspCI CAANNNNNGTGG 2 cut(s) 702, 737
CviAII CATG 9 cut(s) 362, 415, 740, 854, 1033, 1060, 1065, 1141, 1614
CviQI GTAC 1 cut(s) 825
DdeI CTNAG 6 cut(s) 156, 275, 458, 605, 1008, 1227
DpnI GATC 3 cut(s) 1221, 1225, 1344
DpnII GATC 3 cut(s) 1219, 1223, 1342
Eco130I CCWWGG 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 654
Eco88I CYCGRG 2 cut(s) 264, 1319
EcoO109I RGGNCCY 1 cut(s) 1675
EcoRI GAATTC 2 cut(s) 727, 1415
EcoRII CCWGG 2 cut(s) 287, 1621
EcoT14I CCWWGG 1 cut(s) 177
EcoT22I ATGCAT 3 cut(s) 222, 577, 991
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 9 cut(s) 365, 418, 743, 857, 1036, 1063, 1068, 1144, 1617
FaqI GGGAC 2 cut(s) 195, 1336
FatI CATG 9 cut(s) 361, 414, 739, 853, 1032, 1059, 1064, 1140, 1613
FauI CCCGC 1 cut(s) 333
FauNDI CATATG 1 cut(s) 1314
FblI GTMKAC 2 cut(s) 1306, 1516
Fnu4HI GCNGC 3 cut(s) 779, 899, 1334
FokI GGATG 5 cut(s) 62, 216, 404, 517, 1372
Fsp4HI GCNGC 3 cut(s) 779, 899, 1334
FspBI CTAG 5 cut(s) 435, 491, 642, 1449, 1644
GlaI GCGC 4 cut(s) 30, 65, 654, 1523
GluI GCNGC 3 cut(s) 779, 899, 1334
GsuI CTGGAG 1 cut(s) 767
HaeII RGCGCY 3 cut(s) 32, 67, 656
HaeIII GGCC 7 cut(s) 273, 425, 588, 1076, 1240, 1510, 1677
HapII CCGG 3 cut(s) 79, 589, 1672
HhaI GCGC 4 cut(s) 31, 66, 655, 1524
Hin1II CATG 9 cut(s) 365, 418, 743, 857, 1036, 1063, 1068, 1144, 1617
Hin6I GCGC 4 cut(s) 29, 64, 653, 1522
HinP1I GCGC 4 cut(s) 29, 64, 653, 1522
HindIII AAGCTT 2 cut(s) 166, 282
HinfI GANTC 8 cut(s) 43, 99, 262, 399, 534, 638, 670, 744
HpaII CCGG 3 cut(s) 79, 589, 1672
HphI GGTGA 4 cut(s) 166, 1411, 1552, 1594
Hpy166II GTNNAC 3 cut(s) 702, 1307, 1517
Hpy188I TCNGA 2 cut(s) 1359, 1720
Hpy8I GTNNAC 3 cut(s) 702, 1307, 1517
HpyAV CCTTC 5 cut(s) 381, 611, 719, 1104, 1688
HpyCH4III ACNGT 5 cut(s) 529, 568, 664, 1120, 1533
HpyCH4IV ACGT 3 cut(s) 335, 351, 883
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 72, 330, 431, 784
HpyF3I CTNAG 6 cut(s) 156, 275, 458, 605, 1008, 1227
HpySE526I ACGT 3 cut(s) 335, 351, 883
Hsp92II CATG 9 cut(s) 365, 418, 743, 857, 1036, 1063, 1068, 1144, 1617
HspAI GCGC 4 cut(s) 29, 64, 653, 1522
Kpn2I TCCGGA 1 cut(s) 78
KroI GCCGGC 1 cut(s) 588
KroNI GCCGGC 1 cut(s) 590
Kzo9I GATC 3 cut(s) 1219, 1223, 1342
LmnI GCTCC 4 cut(s) 106, 448, 786, 1213
Lsp1109I GCAGC 2 cut(s) 790, 910
LweI GCATC 3 cut(s) 84, 495, 998
MaeI CTAG 5 cut(s) 435, 491, 642, 1449, 1644
MaeII ACGT 3 cut(s) 335, 351, 883
MaeIII GTNAC 4 cut(s) 172, 352, 482, 644
MalI GATC 3 cut(s) 1221, 1225, 1344
MboI GATC 3 cut(s) 1219, 1223, 1342
MboII GAAGA 7 cut(s) 65, 320, 842, 1126, 1162, 1274, 1445
MfeI CAATTG 1 cut(s) 957
MhlI GDGCHC 1 cut(s) 195
MlyI GAGTC 2 cut(s) 108, 256
MmeI TCCRAC 5 cut(s) 376, 511, 712, 1392, 1493
MnlI CCTC 7 cut(s) 16, 19, 260, 284, 415, 1204, 1284
Mph1103I ATGCAT 3 cut(s) 222, 577, 991
MroI TCCGGA 1 cut(s) 78
MroNI GCCGGC 1 cut(s) 588
MroXI GAANNNNTTC 2 cut(s) 369, 1708
MseI TTAA 7 cut(s) 297, 327, 543, 750, 1380, 1656, 1735
MslI CAYNNNNRTG 4 cut(s) 234, 580, 858, 1031
MspI CCGG 3 cut(s) 79, 589, 1672
MspR9I CCNGG 3 cut(s) 289, 1623, 1673
MunI CAATTG 1 cut(s) 957
Mva1269I GAATGC 3 cut(s) 222, 1460, 1664
MvaI CCWGG 2 cut(s) 289, 1623
MvnI CGCG 1 cut(s) 1175
MwoI GCNNNNNNNGC 5 cut(s) 37, 72, 330, 431, 784
NaeI GCCGGC 1 cut(s) 590
NciI CCSGG 1 cut(s) 1673
NdeI CATATG 1 cut(s) 1314
NdeII GATC 3 cut(s) 1219, 1223, 1342
NgoMIV GCCGGC 1 cut(s) 588
NlaIII CATG 9 cut(s) 365, 418, 743, 857, 1036, 1063, 1068, 1144, 1617
NlaIV GGNNCC 3 cut(s) 587, 1077, 1676
NmuCI GTSAC 3 cut(s) 172, 352, 482
NruI TCGCGA 1 cut(s) 1175
NsiI ATGCAT 3 cut(s) 222, 577, 991
PaeR7I CTCGAG 1 cut(s) 264
PagI TCATGA 1 cut(s) 1140
PctI GAATGC 3 cut(s) 222, 1460, 1664
PdiI GCCGGC 1 cut(s) 590
PdmI GAANNNNTTC 2 cut(s) 369, 1708
PfeI GAWTC 6 cut(s) 43, 399, 534, 638, 670, 744
PkrI GCNGC 3 cut(s) 780, 900, 1335
PleI GAGTC 2 cut(s) 107, 256
PpsI GAGTC 2 cut(s) 107, 256
Psp6I CCWGG 2 cut(s) 287, 1621
PspGI CCWGG 2 cut(s) 287, 1621
PspN4I GGNNCC 3 cut(s) 587, 1077, 1676
PspPI GGNCC 4 cut(s) 586, 1075, 1509, 1675
PspXI VCTCGAGB 1 cut(s) 264
RruI TCGCGA 1 cut(s) 1175
RsaI GTAC 1 cut(s) 826
RsaNI GTAC 1 cut(s) 825
RseI CAYNNNNRTG 4 cut(s) 234, 580, 858, 1031
SaqAI TTAA 7 cut(s) 297, 327, 543, 750, 1380, 1656, 1735
SatI GCNGC 3 cut(s) 779, 899, 1334
Sau3AI GATC 3 cut(s) 1219, 1223, 1342
Sau96I GGNCC 4 cut(s) 586, 1075, 1509, 1675
SchI GAGTC 2 cut(s) 108, 256
ScrFI CCNGG 3 cut(s) 289, 1623, 1673
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 3 cut(s) 84, 495, 998
SfcI CTRYAG 6 cut(s) 472, 525, 660, 1002, 1119, 1517
Sfr274I CTCGAG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 264
SmiMI CAYNNNNRTG 4 cut(s) 234, 580, 858, 1031
SmlI CTYRAG 2 cut(s) 264, 734
SmoI CTYRAG 2 cut(s) 264, 734
SpeI ACTAGT 1 cut(s) 1448
SsiI CCGC 6 cut(s) 40, 340, 502, 1277, 1334, 1538
SspI AATATT 1 cut(s) 1732
SspMI CTAG 5 cut(s) 435, 491, 642, 1449, 1644
StyD4I CCNGG 3 cut(s) 287, 1621, 1671
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 5 cut(s) 529, 568, 664, 1120, 1533
TaiI ACGT 3 cut(s) 338, 354, 886
TaqI TCGA 3 cut(s) 265, 1222, 1558
TaqII GACCGA 1 cut(s) 261
TauI GCSGC 1 cut(s) 1336
TfiI GAWTC 6 cut(s) 43, 399, 534, 638, 670, 744
Tru1I TTAA 7 cut(s) 297, 327, 543, 750, 1380, 1656, 1735
Tru9I TTAA 7 cut(s) 297, 327, 543, 750, 1380, 1656, 1735
TscAI CASTG 1 cut(s) 1171
TseFI GTSAC 3 cut(s) 172, 352, 482
TseI GCWGC 2 cut(s) 778, 898
Tsp45I GTSAC 3 cut(s) 172, 352, 482
TspRI CASTG 1 cut(s) 1171
XapI RAATTY 3 cut(s) 727, 1415, 1708
XhoI CTCGAG 1 cut(s) 264
XmiI GTMKAC 2 cut(s) 1306, 1516
XmnI GAANNNNTTC 2 cut(s) 369, 1708
XspI CTAG 5 cut(s) 435, 491, 642, 1449, 1644
Zsp2I ATGCAT 3 cut(s) 222, 577, 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.