Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

2048866 .. 2049170

Gene Structure 305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCATGGAACACAAAAGGCAAAGAAAGATCCCCCTGCTGATGAAATTTTGTATCTAATGAAAACCAATGGAGCACTTCAAATTGCCTATGTTGAGGAGGTTTCAGCTGGTAGGGATGAGAAGGAATATTATTCTGTTCTTGTCAAAGAAAGAAATGGTCCTTTGAAGCTCGGAGAGGGCAAACCAAAGAATCAAAATCATGCCATTATCTTCACTCGTGGTGATGCGGTTCAGATCATTGATATGAACCAAGACAATTATTTTGAGGAGGCTAGGCACTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009870 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010150 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0030054 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0035690 GO:0042221 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0045229 GO:0046677 GO:0048229 GO:0048366 GO:0048367 GO:0048518 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0065007 GO:0070727 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

95

Amino Acids

10.79

Weight (kDa)

6.28

Isoelectric Point (pI)

24.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	6 - 91	2.5e-24	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	80, 166
AluBI	AGCT	2 cut(s)	107, 169
AluI	AGCT	2 cut(s)	107, 169
Alw21I	GWGCWC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	45
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	233
AvaII	GGWCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmsI	GCATC	1 cut(s)	214
BseGI	GGATG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	110, 281
BsiHKAI	GWGCWC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	28, 234
BspACI	CCGC	1 cut(s)	227
BspPI	GGATC	1 cut(s)	23
BssMI	GATC	2 cut(s)	28, 234
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	2 cut(s)	31, 237
BstMBI	GATC	2 cut(s)	28, 234
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	158
CviAII	CATG	2 cut(s)	5, 200
CviJI	RGCY	3 cut(s)	107, 169, 272
CviKI_1	RGCY	3 cut(s)	107, 169, 272
DpnI	GATC	2 cut(s)	30, 236
DpnII	GATC	2 cut(s)	28, 234
Eco47I	GGWCC	1 cut(s)	158
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 203
FaiI	YATR	4 cut(s)	6, 90, 201, 245
FatI	CATG	2 cut(s)	4, 199
FokI	GGATG	1 cut(s)	128
FspBI	CTAG	1 cut(s)	273
Hin1II	CATG	2 cut(s)	8, 203
HinfI	GANTC	1 cut(s)	190
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	173, 234
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	4
Hsp92II	CATG	2 cut(s)	8, 203
Kzo9I	GATC	2 cut(s)	28, 234
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	2 cut(s)	48, 93
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	273
MalI	GATC	2 cut(s)	30, 236
MboI	GATC	2 cut(s)	28, 234
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	45, 81, 256
MnlI	CCTC	5 cut(s)	88, 91, 169, 259, 262
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	107
NdeII	GATC	2 cut(s)	28, 234
NlaIII	CATG	2 cut(s)	8, 203
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	107
RseI	CAYNNNNRTG	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	28, 234
Sau96I	GGNCC	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	3 cut(s)	102, 109, 171
SfaNI	GCATC	1 cut(s)	214
SgeI	CNNG	9 cut(s)	17, 47, 120, 152, 182, 212, 228, 230, 263
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	242
Sse9I	AATT	3 cut(s)	45, 81, 256
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	273
TasI	AATT	3 cut(s)	45, 81, 256
TfiI	GAWTC	1 cut(s)	190
TspDTI	ATGAA	3 cut(s)	57, 74, 260
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	45
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.