Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Reverse (-)

7141596 .. 7141925

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG039900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGTATCTGGAAGCCTACGATCTTGGGAGTTAGGAAGCATGTCTTTACTGGTTCTGTCTCATCACTTGATTGGTTTATGTCAGCTCAGAAGTTTTGTCACCTTGGGACAGCGGGTGTTGGCAAACCCTTTGAAAATTGGAATGCATTATGGTCATTCAGATGTCTTTGACCGATTTTGGTTCTTGACTCGAGGTGGCATCAGTAAAGCTTCCACAATGATTAACATCAGTGAAGACATTTTTGTTAGCTTAATTGTACTTTGTGTGGAGGCAACGTCACCCACCATGAATACATCCAGTGATAAAAAAAAAATAAAAAATAAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009870 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010150 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0030054 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0035690 GO:0042221 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0045229 GO:0046677 GO:0048229 GO:0048366 GO:0048367 GO:0048518 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0065007 GO:0070727 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

109

Amino Acids

12.13

Weight (kDa)

9.76

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	29 - 88	7e-21	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	3 cut(s)	85, 209, 249
AluI	AGCT	3 cut(s)	85, 209, 249
Alw26I	GTCTC	1 cut(s)	63
Ama87I	CYCGRG	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	91, 270
AvaI	CYCGRG	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bse1I	ACTGG	2 cut(s)	54, 297
Bse8I	GATNNNNATC	1 cut(s)	224
BseDI	CCNNGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	100
BseNI	ACTGG	2 cut(s)	54, 297
BsiHKCI	CYCGRG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	120
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	147
BsoBI	CYCGRG	1 cut(s)	189
Bsp143I	GATC	1 cut(s)	20
BspACI	CCGC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	54, 297
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	2 cut(s)	235, 304
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	2 cut(s)	40, 286
CviJI	RGCY	4 cut(s)	15, 85, 209, 249
CviKI_1	RGCY	4 cut(s)	15, 85, 209, 249
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	102
EcoT22I	ATGCAT	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	43, 289
FaiI	YATR	4 cut(s)	41, 79, 150, 287
FalI	AAGNNNNNCTT	2 cut(s)	28, 60
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	2 cut(s)	39, 285
FauI	CCCGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	280
Hin1II	CATG	2 cut(s)	43, 289
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	187
HphI	GGTGA	2 cut(s)	91, 270
Hpy188I	TCNGA	2 cut(s)	89, 160
Hpy188III	TCNNGA	2 cut(s)	9, 184
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	2 cut(s)	43, 289
Kzo9I	GATC	1 cut(s)	20
LpnPI	CCDG	2 cut(s)	35, 310
LweI	GCATC	1 cut(s)	207
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	97, 276
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	245
MluCI	AATT	2 cut(s)	135, 252
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	2 cut(s)	185, 262
Mph1103I	ATGCAT	1 cut(s)	147
MseI	TTAA	2 cut(s)	222, 251
MslI	CAYNNNNRTG	1 cut(s)	159
MspA1I	CMGCKG	1 cut(s)	112
Mva1269I	GAATGC	1 cut(s)	147
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	2 cut(s)	43, 289
NmuCI	GTSAC	2 cut(s)	97, 276
NsiI	ATGCAT	1 cut(s)	147
NspI	RCATGY	1 cut(s)	43
PaeR7I	CTCGAG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	147
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspXI	VCTCGAGB	1 cut(s)	189
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	222, 251
Sau3AI	GATC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	181
SetI	ASST	6 cut(s)	87, 104, 196, 211, 251, 278
SfaNI	GCATC	1 cut(s)	207
Sfr274I	CTCGAG	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	2 cut(s)	135, 252
SsiI	CCGC	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	102
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	190
TaqII	GACCGA	1 cut(s)	186
TasI	AATT	2 cut(s)	135, 252
TatI	WGTACW	1 cut(s)	256
Tru1I	TTAA	2 cut(s)	222, 251
Tru9I	TTAA	2 cut(s)	222, 251
TscAI	CASTG	2 cut(s)	235, 304
TseFI	GTSAC	2 cut(s)	97, 276
Tsp45I	GTSAC	2 cut(s)	97, 276
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	2 cut(s)	235, 304
XceI	RCATGY	1 cut(s)	43
XhoI	CTCGAG	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.