Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

46865319 .. 46865708

Gene Structure 390 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG343600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGTATGTATTGCAGCTTGATACAGACACTAAATTGTTTCAGGTTGCTGTGCTGACTGTGTTTGCCTTTTTATATGGACGTTTTTATCTGGTTATGAGTGGATTGGAAATGAAGATTCTGGAGAACTCCTCCATACATAACACCAAGGTTTCTGGAGAGTCTTTGGCTATGGAGTCTGCTTTTCAACTGGGCTTGTTACCAATGCTTCCCATTGTGATGGAAATTGGTCTGGAAAAGGAGTTCCACAATGCCTTGGGTGATTTCATACTCATGCAGCTCCAGCTGGCCTCTGTTTTCTTCACATTTCAAATAGGAACAAAAGCACATTATTACAGAAGGACAATCTTACGTGGAGGATTAAAACCCAAAGCAACTGGCCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003843 GO:0006810 GO:0008150 GO:0008194 GO:0010232 GO:0010233 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0033036 GO:0033037 GO:0035251 GO:0046527 GO:0051179 GO:0051234 GO:0052545 GO:0080165

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

129

Amino Acids

14.59

Weight (kDa)

8.93

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	59 - 128	2.4e-09	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	188, 311
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	3 cut(s)	19, 280, 286
AluI	AGCT	3 cut(s)	19, 280, 286
AoxI	GGCC	2 cut(s)	288, 379
ApeKI	GCWGC	2 cut(s)	16, 277
AsuHPI	GGTGA	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	28, 289
BccI	CCATC	1 cut(s)	214
BisI	GCNGC	2 cut(s)	17, 278
BlsI	GCNGC	2 cut(s)	18, 279
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	3 cut(s)	143, 177, 266
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	147, 255
Bse1I	ACTGG	2 cut(s)	195, 382
BseDI	CCNNGG	2 cut(s)	147, 255
BseNI	ACTGG	2 cut(s)	195, 382
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	2 cut(s)	28, 289
BshFI	GGCC	2 cut(s)	290, 381
BsnI	GGCC	2 cut(s)	290, 381
BspANI	GGCC	2 cut(s)	290, 381
BsrI	ACTGG	2 cut(s)	195, 382
BssECI	CCNNGG	2 cut(s)	147, 255
BssT1I	CCWWGG	2 cut(s)	147, 255
Bst4CI	ACNGT	1 cut(s)	61
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	288
BstMWI	GCNNNNNNNGC	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	28, 289
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	290, 381
Cac8I	GCNNGC	1 cut(s)	288
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	7 cut(s)	19, 170, 195, 280, 286, 290, 381
CviKI_1	RGCY	7 cut(s)	19, 170, 195, 280, 286, 290, 381
EaeI	YGGCCR	1 cut(s)	379
Eco130I	CCWWGG	2 cut(s)	147, 255
EcoT14I	CCWWGG	2 cut(s)	147, 255
ErhI	CCWWGG	2 cut(s)	147, 255
FaeI	CATG	1 cut(s)	277
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	17, 278
Fsp4HI	GCNGC	2 cut(s)	17, 278
GluI	GCNGC	2 cut(s)	17, 278
GsuI	CTGGAG	3 cut(s)	143, 177, 266
HaeIII	GGCC	2 cut(s)	290, 381
Hin1II	CATG	1 cut(s)	277
HinfI	GANTC	3 cut(s)	118, 161, 176
HphI	GGTGA	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	122, 156, 233
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	2 cut(s)	82, 352
HpyCH4V	TGCA	2 cut(s)	16, 277
HpyF10VI	GCNNNNNNNGC	1 cut(s)	283
HpySE526I	ACGT	2 cut(s)	82, 352
Hsp92II	CATG	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	9 cut(s)	29, 77, 107, 141, 176, 218, 272, 296, 363
Lsp1109I	GCAGC	2 cut(s)	28, 289
MaeII	ACGT	2 cut(s)	82, 352
MaeIII	GTNAC	1 cut(s)	198
MboII	GAAGA	2 cut(s)	127, 292
MlsI	TGGCCA	1 cut(s)	381
MluCI	AATT	3 cut(s)	35, 225, 385
MluNI	TGGCCA	1 cut(s)	381
MlyI	GAGTC	2 cut(s)	170, 185
MnlI	CCTC	3 cut(s)	142, 301, 350
Mox20I	TGGCCA	1 cut(s)	381
MscI	TGGCCA	1 cut(s)	381
MseI	TTAA	2 cut(s)	362, 388
MslI	CAYNNNNRTG	2 cut(s)	218, 272
Msp20I	TGGCCA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	283
NlaIII	CATG	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	18, 279
PleI	GAGTC	2 cut(s)	169, 184
PpsI	GAGTC	2 cut(s)	169, 184
Ppu21I	YACGTR	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	286
RseI	CAYNNNNRTG	2 cut(s)	218, 272
SaqAI	TTAA	2 cut(s)	362, 388
SatI	GCNGC	2 cut(s)	17, 278
SchI	GAGTC	2 cut(s)	170, 185
SetI	ASST	7 cut(s)	21, 48, 85, 153, 282, 288, 355
SmiMI	CAYNNNNRTG	2 cut(s)	218, 272
Sse9I	AATT	3 cut(s)	35, 225, 385
StyI	CCWWGG	2 cut(s)	147, 255
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	2 cut(s)	85, 355
TasI	AATT	3 cut(s)	35, 225, 385
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	362, 388
Tru9I	TTAA	2 cut(s)	362, 388
TseI	GCWGC	2 cut(s)	16, 277
TspDTI	ATGAA	3 cut(s)	17, 128, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.