Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016396.1

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Reverse (-)

19571 .. 20101

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016396.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgcatggaacacaaaaggcaaagaaagatccccctgctgatgaaattttgtatctaatgaaaaccaatggagcacttcaaattgcctatgttgaggaggtttcaactggcagggatgagaaggaatattattctgttcttgtcaagtatgataatcaattagagaaagaaatggaaatctatcgcattaagttacctagtcctttgaagctcggagagggcaaaccggagaatcaaaatcatgccattatcttcactcgtggtgatgcggttcagatcattgatatgaaccaagacaattattttgaggaggcactcaaaatgaggaatctattagaagaatacaggcactatcatggtatccggaagcttacgatcttgggagttagggagcatgtctttactggttctgtttcacacttgcttggtttatgtcaggtcaggaaacaagttgtcatcttaggacagcaggtgttggtaaatcctttgcaagttcgaatgcattatggtcatccagatgtctttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009870 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010150 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0030054 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0035690 GO:0042221 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0045229 GO:0046677 GO:0048229 GO:0048366 GO:0048367 GO:0048518 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0065007 GO:0070727 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

176

Amino Acids

20.38

Weight (kDa)

6.45

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
Acc36I	ACCTGC	1 cut(s)	460
AccIII	TCCGGA	1 cut(s)	363
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	80, 105, 208
AluBI	AGCT	2 cut(s)	211, 370
AluI	AGCT	2 cut(s)	211, 370
Alw21I	GWGCWC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	45
ArsI	GACNNNNNNTTYG	2 cut(s)	287, 319
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	496
BauI	CACGAG	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	371
BfaI	CTAG	1 cut(s)	198
BfuAI	ACCTGC	1 cut(s)	460
BfuI	GTATCC	1 cut(s)	371
BmsI	GCATC	1 cut(s)	256
Bpu14I	TTCGAA	1 cut(s)	496
BsaWI	WCCGGW	2 cut(s)	226, 363
Bse1I	ACTGG	2 cut(s)	112, 409
BseAI	TCCGGA	1 cut(s)	363
BseGI	GGATG	2 cut(s)	121, 511
BseNI	ACTGG	2 cut(s)	112, 409
BseRI	GAGGAG	2 cut(s)	110, 323
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	227, 364
BsmI	GAATGC	1 cut(s)	504
Bsp119I	TTCGAA	1 cut(s)	496
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	28, 276, 375
BspACI	CCGC	1 cut(s)	269
BspEI	TCCGGA	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	1 cut(s)	23
BspT104I	TTCGAA	1 cut(s)	496
BsrI	ACTGG	2 cut(s)	112, 409
BssMI	GATC	3 cut(s)	28, 276, 375
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	496
BstDEI	CTNAG	1 cut(s)	460
BstF5I	GGATG	2 cut(s)	121, 511
BstKTI	GATC	3 cut(s)	31, 279, 378
BstMBI	GATC	3 cut(s)	28, 276, 375
BstNSI	RCATGY	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	371
BtsCI	GGATG	2 cut(s)	121, 511
BveI	ACCTGC	1 cut(s)	460
CviAII	CATG	4 cut(s)	5, 242, 356, 395
CviJI	RGCY	2 cut(s)	211, 370
CviKI_1	RGCY	2 cut(s)	211, 370
DdeI	CTNAG	1 cut(s)	460
DpnI	GATC	3 cut(s)	30, 278, 377
DpnII	GATC	3 cut(s)	28, 276, 375
EcoT22I	ATGCAT	2 cut(s)	6, 504
FaeI	CATG	4 cut(s)	8, 245, 359, 398
FaiI	YATR	9 cut(s)	6, 90, 150, 243, 287, 357, 396, 433, 507
FatI	CATG	4 cut(s)	4, 241, 355, 394
FokI	GGATG	2 cut(s)	128, 498
FspBI	CTAG	1 cut(s)	198
HapII	CCGG	2 cut(s)	227, 364
Hin1II	CATG	4 cut(s)	8, 245, 359, 398
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	232, 328
HpaII	CCGG	2 cut(s)	227, 364
HphI	GGTGA	1 cut(s)	275
Hpy188I	TCNGA	2 cut(s)	215, 276
Hpy188III	TCNNGA	3 cut(s)	364, 442, 515
HpyAV	CCTTC	1 cut(s)	115
HpyCH4V	TGCA	3 cut(s)	4, 490, 502
HpyF3I	CTNAG	1 cut(s)	460
Hsp92II	CATG	4 cut(s)	8, 245, 359, 398
Kpn2I	TCCGGA	1 cut(s)	363
Kzo9I	GATC	3 cut(s)	28, 276, 375
LmnI	GCTCC	2 cut(s)	71, 391
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	3 cut(s)	30, 278, 377
MboI	GATC	3 cut(s)	28, 276, 375
MboII	GAAGA	2 cut(s)	244, 350
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	4 cut(s)	45, 81, 158, 298
MnlI	CCTC	6 cut(s)	88, 91, 211, 301, 304, 318
Mph1103I	ATGCAT	2 cut(s)	6, 504
MroI	TCCGGA	1 cut(s)	363
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	3 cut(s)	284, 354, 516
MspI	CCGG	2 cut(s)	227, 364
Mva1269I	GAATGC	1 cut(s)	504
NdeII	GATC	3 cut(s)	28, 276, 375
NlaIII	CATG	4 cut(s)	8, 245, 359, 398
NsiI	ATGCAT	2 cut(s)	6, 504
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	496
PaqCI	CACCTGC	1 cut(s)	460
PctI	GAATGC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	232, 328
PsuI	RGATCY	1 cut(s)	28
RseI	CAYNNNNRTG	3 cut(s)	284, 354, 516
SaqAI	TTAA	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	28, 276, 375
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	6 cut(s)	102, 199, 213, 372, 441, 474
SfaNI	GCATC	1 cut(s)	256
SfuI	TTCGAA	1 cut(s)	496
SmiMI	CAYNNNNRTG	3 cut(s)	284, 354, 516
Sse9I	AATT	4 cut(s)	45, 81, 158, 298
SsiI	CCGC	1 cut(s)	269
SspI	AATATT	1 cut(s)	128
SspMI	CTAG	1 cut(s)	198
TaqI	TCGA	1 cut(s)	496
TasI	AATT	4 cut(s)	45, 81, 158, 298
TfiI	GAWTC	2 cut(s)	232, 328
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TspDTI	ATGAA	3 cut(s)	57, 74, 302
XapI	RAATTY	1 cut(s)	45
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	1 cut(s)	198
Zsp2I	ATGCAT	2 cut(s)	6, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.