Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

1755879 .. 1757155

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g02060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTACTCAAGGAGTCATTTTGTGAAAGGCCTTGAACTTATGGTACTGCTTATAATTTATCAGATATACGGTTCAGCAGTAACTGGTACAATATCATATATCTTCGTCACATTCTCCATGTGGTTCTTAGTGGTTTCGTGGCTGTTTGCTCCCTTCCTGTTTAACCCTTCGGGATTTGAATGGCAAAAGATAGTCGAAGATTGGGATGATTGGACAAAATGGATAAGTAGCCATGGTGGTATTGGTGTGCCAGCGACCAAGAGCTGGGAGTCTTGGTGGGATGAGGAACAGGAACACCTGCAGCACACTGGGGTTTTGGGACGATTTTGGGAGATTGTTCTTTCTCTGCGCTTTTTTCTCTTCCAATATGGAATTGTGTACCATCTAAATGTGGCCAGGGGTGATAAAAGCATCATGGTTTATGGTCTGTCATGGCTGGTCATTGTCGCTGTGATGATCATCCTAAAGGTTGTGTCGATGGGAAGAAAGAGGTTCAGTGCAGATTTCCAGCTGATGTTCAGGCTTCTCAAGTTGTTCCTGTTTATTGGGTTTGTTGTCACTATTGGAATGCTTTTCGCTTTCCTCAGTCTTACTGTTGGTGACATCTTTGTGAGCTTATTGGCCTTCTTGCCCACGGGATGGGCACTACTAATGATATCACAAGCGTGCAAGCCATTGGTGAAGGCCCTAGGAATGTGGGGATCTGTCAAAGCTCTAGCAAGAGGGTACGAGTACGTGATGGGGATCACTATACTTGCACCAGTAGTTGTTCTTGCATGGTTCCCATTTGTGTCGGAGTTCCAGACCAGGCTGCTATTCAACCAAGCTTTCAGCCGAGGGCTTCAGATCCAACGTATTCTTACTGGTGGGAAGAAGCACAAGTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006075 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009555 GO:0009556 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010208 GO:0010769 GO:0010927 GO:0016043 GO:0016049 GO:0016051 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034293 GO:0034637 GO:0034645 GO:0040007 GO:0040008 GO:0043062 GO:0043170 GO:0043900 GO:0043934 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048236 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048646 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051273 GO:0051274 GO:0051321 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080092 GO:0085029 GO:1901576 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

297

Amino Acids

33.98

Weight (kDa)

9.56

Isoelectric Point (pI)

23.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	53
AarI	CACCTGC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	306
AccB7I	CCANNNNNTGG	2 cut(s)	264, 639
AclWI	GGATC	3 cut(s)	709, 752, 841
AcoI	YGGCCR	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	827
AfaI	GTAC	6 cut(s)	5, 45, 88, 380, 728, 734
AfiI	CCNNNNNNNGG	2 cut(s)	264, 639
AgsI	TTSAA	3 cut(s)	35, 179, 820
AjnI	CCWGG	2 cut(s)	395, 806
AleI	CACNNNNGTG	1 cut(s)	664
AluBI	AGCT	5 cut(s)	264, 511, 615, 713, 827
AluI	AGCT	5 cut(s)	264, 511, 615, 713, 827
AlwI	GGATC	3 cut(s)	709, 752, 841
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	4 cut(s)	28, 393, 621, 684
ApeKI	GCWGC	2 cut(s)	301, 811
AspA2I	CCTAGG	1 cut(s)	688
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	685
AsuHPI	GGTGA	3 cut(s)	413, 611, 691
AvrII	CCTAGG	1 cut(s)	688
BaeGI	GKGCMC	1 cut(s)	646
BalI	TGGCCA	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	313, 798
BccI	CCATC	4 cut(s)	390, 472, 633, 733
BciT130I	CCWGG	2 cut(s)	397, 808
BclI	TGATCA	1 cut(s)	456
BfaI	CTAG	2 cut(s)	689, 716
BfmI	CTRYAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	302, 812
BlnI	CCTAGG	1 cut(s)	688
BlsI	GCNGC	2 cut(s)	303, 813
Bme1390I	CCNGG	2 cut(s)	397, 808
BmgT120I	GGNCC	1 cut(s)	685
BmiI	GGNNCC	1 cut(s)	782
BmrFI	CCNGG	2 cut(s)	397, 808
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	512
BsaAI	YACGTR	1 cut(s)	736
BsaBI	GATNNNNATC	2 cut(s)	458, 743
BsaJI	CCNNGG	5 cut(s)	232, 396, 633, 688, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 639
Bse1I	ACTGG	4 cut(s)	88, 313, 761, 868
Bse8I	GATNNNNATC	2 cut(s)	458, 743
BseBI	CCWGG	2 cut(s)	397, 808
BseDI	CCNNGG	5 cut(s)	232, 396, 633, 688, 835
BseGI	GGATG	4 cut(s)	211, 286, 459, 644
BseJI	GATNNNNATC	2 cut(s)	458, 743
BseLI	CCNNNNNNNGG	2 cut(s)	264, 639
BseMII	CTCAG	1 cut(s)	598
BseNI	ACTGG	4 cut(s)	88, 313, 761, 868
BseSI	GKGCMC	1 cut(s)	646
BseXI	GCAGC	2 cut(s)	313, 798
BseYI	CCCAGC	1 cut(s)	264
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	4 cut(s)	30, 395, 623, 686
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	264, 639
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	573
BsnI	GGCC	4 cut(s)	30, 395, 623, 686
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp143I	GATC	4 cut(s)	456, 701, 744, 846
Bsp19I	CCATGG	1 cut(s)	232
BspANI	GGCC	4 cut(s)	30, 395, 623, 686
BspCNI	CTCAG	1 cut(s)	597
BspLI	GGNNCC	1 cut(s)	782
BspMAI	CTGCAG	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	306
BspPI	GGATC	3 cut(s)	709, 752, 841
BsrI	ACTGG	4 cut(s)	88, 313, 761, 868
BssECI	CCNNGG	5 cut(s)	232, 396, 633, 688, 835
BssMI	GATC	4 cut(s)	456, 701, 744, 846
BssT1I	CCWWGG	2 cut(s)	232, 688
Bst2UI	CCWGG	2 cut(s)	397, 808
Bst4CI	ACNGT	2 cut(s)	71, 595
Bst6I	CTCTTC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	252, 667, 671
BstDEI	CTNAG	2 cut(s)	127, 584
BstDSI	CCRYGG	2 cut(s)	232, 633
BstF5I	GGATG	4 cut(s)	211, 286, 459, 644
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	4 cut(s)	459, 704, 747, 849
BstMBI	GATC	4 cut(s)	456, 701, 744, 846
BstNI	CCWGG	2 cut(s)	397, 808
BstSCI	CCNGG	2 cut(s)	395, 806
BstSFI	CTRYAG	1 cut(s)	299
BstSLI	GKGCMC	1 cut(s)	646
BstV1I	GCAGC	2 cut(s)	313, 798
BstX2I	RGATCY	2 cut(s)	701, 846
BstYI	RGATCY	2 cut(s)	701, 846
BsuRI	GGCC	4 cut(s)	30, 395, 623, 686
BtgI	CCRYGG	2 cut(s)	232, 633
BtsCI	GGATG	4 cut(s)	211, 286, 459, 644
BtsIMutI	CAGTG	2 cut(s)	306, 502
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	3 cut(s)	252, 667, 671
CaiI	CAGNNNCTG	1 cut(s)	83
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	685
Csp6I	GTAC	6 cut(s)	4, 44, 87, 379, 727, 733
CviAII	CATG	5 cut(s)	118, 233, 415, 432, 777
CviQI	GTAC	6 cut(s)	4, 44, 87, 379, 727, 733
DdeI	CTNAG	2 cut(s)	127, 584
DpnI	GATC	4 cut(s)	458, 703, 746, 848
DpnII	GATC	4 cut(s)	456, 701, 744, 846
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	232, 688
Eco147I	AGGCCT	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	657
Eco57I	CTGAAG	1 cut(s)	827
EcoO109I	RGGNCCY	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	395, 806
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	232, 688
ErhI	CCWWGG	2 cut(s)	232, 688
FaeI	CATG	5 cut(s)	121, 236, 418, 435, 780
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	5 cut(s)	117, 232, 414, 431, 776
FbaI	TGATCA	1 cut(s)	456
Fnu4HI	GCNGC	2 cut(s)	302, 812
FokI	GGATG	4 cut(s)	218, 293, 446, 651
Fsp4HI	GCNGC	2 cut(s)	302, 812
FspBI	CTAG	2 cut(s)	689, 716
GlaI	GCGC	1 cut(s)	350
GluI	GCNGC	2 cut(s)	302, 812
GsaI	CCCAGC	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	30, 395, 623, 686
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	121, 236, 418, 435, 780
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	2 cut(s)	13, 269
HphI	GGTGA	3 cut(s)	413, 611, 691
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	3 cut(s)	63, 796, 846
Hpy188III	TCNNGA	2 cut(s)	171, 802
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	4 cut(s)	163, 177, 634, 676
HpyCH4III	ACNGT	2 cut(s)	71, 595
HpyCH4IV	ACGT	2 cut(s)	735, 853
HpyCH4V	TGCA	5 cut(s)	301, 500, 669, 758, 776
HpyF3I	CTNAG	2 cut(s)	127, 584
HpySE526I	ACGT	2 cut(s)	735, 853
Hsp92II	CATG	5 cut(s)	121, 236, 418, 435, 780
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	456, 701, 744, 846
LmnI	GCTCC	1 cut(s)	154
Lsp1109I	GCAGC	2 cut(s)	313, 798
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	2 cut(s)	689, 716
MaeII	ACGT	2 cut(s)	735, 853
MaeIII	GTNAC	4 cut(s)	79, 106, 556, 599
MalI	GATC	4 cut(s)	458, 703, 746, 848
MboI	GATC	4 cut(s)	456, 701, 744, 846
MboII	GAAGA	5 cut(s)	94, 209, 352, 495, 883
MflI	RGATCY	2 cut(s)	701, 846
MhlI	GDGCHC	1 cut(s)	646
MlsI	TGGCCA	1 cut(s)	395
MluCI	AATT	2 cut(s)	54, 372
MluNI	TGGCCA	1 cut(s)	395
MlyI	GAGTC	2 cut(s)	22, 278
MmeI	TCCRAC	2 cut(s)	774, 874
MnlI	CCTC	5 cut(s)	277, 483, 593, 716, 830
Mox20I	TGGCCA	1 cut(s)	395
MscI	TGGCCA	1 cut(s)	395
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	3 cut(s)	387, 608, 664
Msp20I	TGGCCA	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	2 cut(s)	397, 808
Mva1269I	GAATGC	1 cut(s)	573
MvaI	CCWGG	2 cut(s)	397, 808
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	4 cut(s)	456, 701, 744, 846
NlaIII	CATG	5 cut(s)	121, 236, 418, 435, 780
NlaIV	GGNNCC	1 cut(s)	782
NmeAIII	GCCGAG	1 cut(s)	860
NmuCI	GTSAC	3 cut(s)	106, 556, 599
OliI	CACNNNNGTG	1 cut(s)	664
PaqCI	CACCTGC	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	30
PctI	GAATGC	1 cut(s)	573
PflMI	CCANNNNNTGG	2 cut(s)	264, 639
PkrI	GCNGC	2 cut(s)	303, 813
PleI	GAGTC	2 cut(s)	21, 277
PpsI	GAGTC	2 cut(s)	21, 277
Ppu21I	YACGTR	1 cut(s)	736
PsiI	TTATAA	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	395, 806
PspFI	CCCAGC	1 cut(s)	264
PspGI	CCWGG	2 cut(s)	395, 806
PspN4I	GGNNCC	1 cut(s)	782
PspPI	GGNCC	1 cut(s)	685
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PstI	CTGCAG	1 cut(s)	303
PstNI	CAGNNNCTG	1 cut(s)	83
PsuI	RGATCY	2 cut(s)	701, 846
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	6 cut(s)	5, 45, 88, 380, 728, 734
RsaNI	GTAC	6 cut(s)	4, 44, 87, 379, 727, 733
RseI	CAYNNNNRTG	3 cut(s)	387, 608, 664
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	2 cut(s)	302, 812
Sau3AI	GATC	4 cut(s)	456, 701, 744, 846
Sau96I	GGNCC	1 cut(s)	685
SchI	GAGTC	2 cut(s)	22, 278
ScrFI	CCNGG	2 cut(s)	397, 808
SduI	GDGCHC	1 cut(s)	646
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	299
SmiMI	CAYNNNNRTG	3 cut(s)	387, 608, 664
SmlI	CTYRAG	2 cut(s)	7, 527
SmoI	CTYRAG	2 cut(s)	7, 527
Sse9I	AATT	2 cut(s)	54, 372
SseBI	AGGCCT	1 cut(s)	30
SspMI	CTAG	2 cut(s)	689, 716
StuI	AGGCCT	1 cut(s)	30
StyD4I	CCNGG	2 cut(s)	395, 806
StyI	CCWWGG	2 cut(s)	232, 688
TaaI	ACNGT	2 cut(s)	71, 595
TaiI	ACGT	2 cut(s)	738, 856
TaqI	TCGA	2 cut(s)	195, 476
TasI	AATT	2 cut(s)	54, 372
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	313, 502
TseFI	GTSAC	3 cut(s)	106, 556, 599
TseI	GCWGC	2 cut(s)	301, 811
Tsp45I	GTSAC	3 cut(s)	106, 556, 599
TspRI	CASTG	2 cut(s)	313, 502
Van91I	CCANNNNNTGG	2 cut(s)	264, 639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmaJI	CCTAGG	1 cut(s)	688
XspI	CTAG	2 cut(s)	689, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.