Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

58171840 .. 58172772

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20943

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTGTCGTATTACTTTTCAACAATAGGATTTTATATCAGCTCAATGTTGGTTGTGATGACGGTCTACTCTTTCCTGTATGGTATACTCTACTTGTTATTGAGTGGAATGGAGAAGACAATTATGACCTATGCTGCCAGAAGGGGAAATAATGCTCTACAAACAGATATGGCTTCACAATCTGTTGTCCAATTAGGTTTGTTGACGTCCTTGCCAATGATCATGGAAATTGGACTTGAAAGAGGGTTCAGAACTGCATTAGGGGACACGACAATAATGCAGCTACAGCTAGCATCAGTTTTCTTTACTTTCTCACTGGGTACAAAGGTTCATTACTATGGGAGAACAATCCTGCATGGTAGGGCTAAGTACAGAGCAACTGGTCGTGGTTTTGTTGTTCAGCATGAAAGGTTTGGTGAAAACTACAGGATGTACTCACGGAGTCACTTTACAAAAGACCTGGAGCTTATGATACTGCTTATTATTTATAGTATATATGGCTCAGCAGCAGATGGCCGTATGTTCATTAAGGCTATTCCAATCAATCCAGAAACATATATAAAGACCTCAACAAGGCTATTTCATATCAATACACCAACATATATAAAGGCCTCAACAACACATCAATCAAGCATCAACAAAGCTACTGATAAGCATTTATACCTTTCTTCTGAAGACAATCACATTATTCACTACCCGAAACCAACTTTGGTATTTGACACTGTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0001558 GO:0003006 GO:0005975 GO:0005976 GO:0006073 GO:0006074 GO:0006075 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009555 GO:0009556 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010208 GO:0010769 GO:0010927 GO:0016043 GO:0016049 GO:0016051 GO:0019953 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0030154 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034293 GO:0034637 GO:0034645 GO:0040007 GO:0040008 GO:0043062 GO:0043170 GO:0043900 GO:0043934 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044703 GO:0044706 GO:0045229 GO:0045595 GO:0048229 GO:0048236 GO:0048468 GO:0048588 GO:0048589 GO:0048638 GO:0048646 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051239 GO:0051273 GO:0051274 GO:0051321 GO:0051510 GO:0051704 GO:0060284 GO:0060560 GO:0065007 GO:0071704 GO:0071840 GO:0080092 GO:0085029 GO:1901576 GO:1903046 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

243

Amino Acids

27.68

Weight (kDa)

9.52

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	1 - 165	2.3e-34	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
AccI	GTMKAC	2 cut(s)	66, 85
AcoI	YGGCCR	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	693
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	3 cut(s)	322, 371, 434
AfiI	CCNNNNNNNGG	1 cut(s)	573
AgsI	TTSAA	2 cut(s)	21, 239
AjnI	CCWGG	1 cut(s)	459
AjuI	GAANNNNNNNTTGG	2 cut(s)	692, 724
AluBI	AGCT	5 cut(s)	42, 283, 289, 466, 644
AluI	AGCT	5 cut(s)	42, 283, 289, 466, 644
AoxI	GGCC	2 cut(s)	514, 609
ApeKI	GCWGC	3 cut(s)	134, 280, 506
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	289
BaeI	ACNNNNGTAYC	2 cut(s)	312, 345
BbsI	GAAGAC	2 cut(s)	122, 681
BbvI	GCAGC	3 cut(s)	121, 292, 518
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	501
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	461
BclI	TGATCA	1 cut(s)	219
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	2 cut(s)	284, 424
BisI	GCNGC	3 cut(s)	135, 281, 507
BlpI	GCTNAGC	1 cut(s)	502
BlsI	GCNGC	3 cut(s)	136, 282, 508
Bme1390I	CCNGG	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	461
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	2 cut(s)	302, 642
BmtI	GCTAGC	1 cut(s)	293
BmuI	ACTGGG	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	122, 681
BpmI	CTGGAG	1 cut(s)	482
Bpu1102I	GCTNAGC	1 cut(s)	502
BsaHI	GRCGYC	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	573
Bse1I	ACTGG	2 cut(s)	321, 385
BseBI	CCWGG	1 cut(s)	461
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	321, 385
BseXI	GCAGC	3 cut(s)	121, 292, 518
BshFI	GGCC	2 cut(s)	516, 611
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	2 cut(s)	516, 611
Bsp143I	GATC	1 cut(s)	219
Bsp1720I	GCTNAGC	1 cut(s)	502
BspANI	GGCC	2 cut(s)	516, 611
BspCNI	CTCAG	1 cut(s)	515
BspOI	GCTAGC	1 cut(s)	293
BsrI	ACTGG	2 cut(s)	321, 385
BssMI	GATC	1 cut(s)	219
BssNAI	GTATAC	1 cut(s)	86
BssNI	GRCGYC	1 cut(s)	206
Bst1107I	GTATAC	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	2 cut(s)	64, 724
BstACI	GRCGYC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	2 cut(s)	366, 502
BstENI	CCTNNNNNAGG	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	435
BstKTI	GATC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSFI	CTRYAG	2 cut(s)	284, 424
BstV1I	GCAGC	3 cut(s)	121, 292, 518
BstV2I	GAAGAC	2 cut(s)	122, 681
BstZ17I	GTATAC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	516, 611
BtsCI	GGATG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	314, 720
Cac8I	GCNNGC	1 cut(s)	291
Csp6I	GTAC	3 cut(s)	321, 370, 433
CviAII	CATG	4 cut(s)	223, 356, 404, 729
CviQI	GTAC	3 cut(s)	321, 370, 433
DdeI	CTNAG	2 cut(s)	366, 502
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	514
Eco147I	AGGCCT	1 cut(s)	611
Eco57I	CTGAAG	1 cut(s)	693
EcoNI	CCTNNNNNAGG	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	459
FaeI	CATG	4 cut(s)	226, 359, 407, 732
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	4 cut(s)	222, 355, 403, 728
FbaI	TGATCA	1 cut(s)	219
FblI	GTMKAC	2 cut(s)	66, 85
Fnu4HI	GCNGC	3 cut(s)	135, 281, 507
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	3 cut(s)	135, 281, 507
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	3 cut(s)	135, 281, 507
GsuI	CTGGAG	1 cut(s)	482
HaeIII	GGCC	2 cut(s)	516, 611
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	4 cut(s)	226, 359, 407, 732
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HinfI	GANTC	1 cut(s)	442
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	3 cut(s)	67, 86, 204
Hpy188I	TCNGA	2 cut(s)	251, 673
Hpy188III	TCNNGA	1 cut(s)	548
Hpy8I	GTNNAC	3 cut(s)	67, 86, 204
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	64, 724
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	257, 280, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	286
HpyF3I	CTNAG	2 cut(s)	366, 502
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	4 cut(s)	226, 359, 407, 732
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	9 cut(s)	89, 151, 302, 365, 366, 412, 446, 473, 561
Lsp1109I	GCAGC	3 cut(s)	121, 292, 518
LweI	GCATC	2 cut(s)	302, 642
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	3 cut(s)	127, 660, 686
MluCI	AATT	3 cut(s)	120, 191, 228
MlyI	GAGTC	1 cut(s)	451
MnlI	CCTC	3 cut(s)	236, 577, 622
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	336
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	1 cut(s)	286
NdeII	GATC	1 cut(s)	219
NheI	GCTAGC	1 cut(s)	289
NlaIII	CATG	4 cut(s)	226, 359, 407, 732
NmuCI	GTSAC	1 cut(s)	443
PceI	AGGCCT	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	136, 282, 508
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
RsaI	GTAC	3 cut(s)	322, 371, 434
RsaNI	GTAC	3 cut(s)	321, 370, 433
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	3 cut(s)	135, 281, 507
Sau3AI	GATC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	461
SfaNI	GCATC	2 cut(s)	302, 642
SfcI	CTRYAG	2 cut(s)	284, 424
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	3 cut(s)	120, 191, 228
SseBI	AGGCCT	1 cut(s)	611
SspMI	CTAG	1 cut(s)	290
StuI	AGGCCT	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	64, 724
TaiI	ACGT	1 cut(s)	209
TasI	AATT	3 cut(s)	120, 191, 228
TatI	WGTACW	2 cut(s)	369, 432
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	2 cut(s)	321, 727
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	3 cut(s)	134, 280, 506
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	4 cut(s)	320, 420, 514, 572
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	2 cut(s)	321, 727
XagI	CCTNNNNNAGG	1 cut(s)	571
XmiI	GTMKAC	2 cut(s)	66, 85
XspI	CTAG	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.