pycom09g07000

callose synthase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
5170056 .. 5174148
4093 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g07000.4

Sequence Viewer

Length: 1446 bp
ATGAAAACACATATATATAATGAGAAACATAGGTTTTCCGAAACCTATATACAACTGACCTATGTATTGCAGCTTGACACGGACATTATATTGTTTCAGGTAACTGTGCTGGCTGTATATGTGTTTTTATATGGACGTATGTACATGGTTATGAGTGGGTTAGAGAACGAGATCATGGAGAATCCAGCCATACATGAGAACAAAGCCTTCGAAGAGGCTTTGGCTGCCCAGTCTGTCTTTCAACTGGGCTTGTTGCTTGTGCTTCCCATGGTAATGGAAGTTGGCCTAGAGAAAGGGTTCCGCACTGCCTTGGGTGAATTTGTCATCATGCAGCTGCAGTTGGCCTCTGTTTTCTTCACATTCCAACTTGGAACAAAAGCCCATTACTATGGAAGGACAATCTTACACGGAGGATCTAAATACCGCGCAACTGGCCGTGGTTTTGTTGTCCACCATGCAAAGTTTTCCGAGAATTATAGACTCTACTCACGCAGTCACTTTGTGAAAGGGTTGGAAGTGCTGATTCTGCTGATTGTTTATGGAGTCTATGGGGAATCTTATAGGAGTTCAAATCTTTTTCGGTTCATCATTTTCTCCATGTGGTTTCTGGTTGCTTCGTGGTTGTTTGCTCCTTTCATATTCAATCCGTCCAGCTTTGGCTGGCAGAAAATTGTAGATGATTGGACAGAGTGGAATTGGTGGATGGGAAACCGTGGTCGTATTGGGATATCACCTGACAAAAGTTGGGAATCATGGTGGGATGAAGAACAGGAACACCTCAAATACACAGGTTTCCGGGGAAGAATTCTTGAGATAATACTTGCGCTTCGGTTCCTTATTTACCAATATGGAATTGTTTACCACCTTGATATAGCTCATCACAGCAAGAGTTTACTGGTTTATGGACTTTCTTGGGTGGTTATGGTAACTGTTCTTCTCGTTCTAATGATAGTTTCCATGGGTGGACGAAGATTTGGCCGCGACTTTCACCTCAGGTTCAGGATTTTGGAAACGCTTCTGTTTCTTGGTTTCATGTCAGTCTTGACTGTCCTATTTGTTGTTTGTGGCCTTTACCATTTCAGATCTATTTGCTGCAATCCCTGCCTTTCTACCAACCGGCTGGGCCCTTCTTCTGATCGGACAAGCATGCAGGCCGGTGTTCAGAAGGCTAGGATTCTGGGAATCAATCAAGGAGCTTGGACGAGCATACGATTACATAATGGGACTAGTAATCTTCACGTCCATAGCCATTTTGTCATGGTTCCCGTTTGTATCAGAGTTCCAAACACGTATCCTCTTCAACCAAGCATTCAGCAGAGGCCTGCAGATTTCCAGGATTCTTGCAGGAAGGAGAGACAAGACTGCGTCTTGGACAGAAACTTAAAAATTTCCATCTACATCGAAGCTTTTAGCATCTCTAAGTTCATATCCGCAATTAGAATATAA

Protein Analysis

482

Amino Acids

55.82

Weight (kDa)

9.23

Isoelectric Point (pI)

32.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 426, 981
AciI CCGC 4 cut(s) 301, 424, 979, 1431
AclWI GGATC 1 cut(s) 421
AcoI YGGCCR 2 cut(s) 433, 976
AcsI RAATTY 3 cut(s) 317, 804, 1386
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 1 cut(s) 143
AflIII ACRYGT 1 cut(s) 1287
AgsI TTSAA 4 cut(s) 242, 570, 643, 1301
AhlI ACTAGT 1 cut(s) 1226
AjiI CACGTC 1 cut(s) 1240
AjnI CCWGG 1 cut(s) 1332
AluBI AGCT 6 cut(s) 73, 334, 654, 875, 1196, 1406
AluI AGCT 6 cut(s) 73, 334, 654, 875, 1196, 1406
Alw26I GTCTC 1 cut(s) 1348
AlwI GGATC 1 cut(s) 421
AoxI GGCC 8 cut(s) 283, 342, 433, 976, 1066, 1123, 1152, 1319
ApaI GGGCCC 1 cut(s) 1127
ApeKI GCWGC 5 cut(s) 70, 224, 331, 334, 1092
ApoI RAATTY 3 cut(s) 317, 804, 1386
Asp700I GAANNNNTTC 2 cut(s) 296, 1014
AspLEI GCGC 2 cut(s) 428, 826
AspS9I GGNCC 2 cut(s) 1123, 1124
AsuC2I CCSGG 1 cut(s) 797
AsuHPI GGTGA 3 cut(s) 326, 723, 980
AsuII TTCGAA 1 cut(s) 210
AxyI CCTNAGG 1 cut(s) 992
BaeGI GKGCMC 1 cut(s) 1127
BanII GRGCYC 1 cut(s) 1127
BarI GAAGNNNNNNTAC 2 cut(s) 918, 950
BbvI GCAGC 5 cut(s) 82, 211, 321, 343, 1079
BccI CCATC 2 cut(s) 697, 1400
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 1334
BciVI GTATCC 1 cut(s) 1302
BcnI CCSGG 1 cut(s) 797
BcoDI GTCTC 1 cut(s) 1348
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 3 cut(s) 287, 1170, 1227
BfmI CTRYAG 2 cut(s) 335, 1323
BfuI GTATCC 1 cut(s) 1302
BglII AGATCT 1 cut(s) 1082
BisI GCNGC 6 cut(s) 71, 225, 332, 335, 979, 1093
BlsI GCNGC 6 cut(s) 72, 226, 333, 336, 980, 1094
Bme1390I CCNGG 2 cut(s) 797, 1334
BmgBI CACGTC 1 cut(s) 1240
BmgT120I GGNCC 2 cut(s) 1123, 1124
BmiI GGNNCC 4 cut(s) 299, 833, 1125, 1263
BmrFI CCNGG 2 cut(s) 797, 1334
BmrI ACTGGG 2 cut(s) 223, 254
BmsI GCATC 1 cut(s) 1422
BmuI ACTGGG 2 cut(s) 223, 254
Bpu14I TTCGAA 1 cut(s) 210
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 1 cut(s) 797
BsaAI YACGTR 1 cut(s) 1290
BsaJI CCNNGG 6 cut(s) 267, 309, 436, 712, 796, 957
Bse118I RCCGGY 2 cut(s) 1116, 1154
Bse1I ACTGG 4 cut(s) 229, 249, 436, 900
Bse21I CCTNAGG 1 cut(s) 992
BseBI CCWGG 1 cut(s) 1334
BseDI CCNNGG 6 cut(s) 267, 309, 436, 712, 796, 957
BseGI GGATG 2 cut(s) 708, 766
BseMII CTCAG 1 cut(s) 1006
BseNI ACTGG 4 cut(s) 229, 249, 436, 900
BseSI GKGCMC 1 cut(s) 1127
BseXI GCAGC 5 cut(s) 82, 211, 321, 343, 1079
BseYI CCCAGC 1 cut(s) 1120
Bsh1236I CGCG 2 cut(s) 426, 981
BshFI GGCC 8 cut(s) 285, 344, 435, 978, 1068, 1125, 1154, 1321
BsiSI CCGG 3 cut(s) 796, 1117, 1155
BslFI GGGAC 1 cut(s) 1237
BsmAI GTCTC 1 cut(s) 1348
BsmFI GGGAC 1 cut(s) 1237
BsmI GAATGC 1 cut(s) 1308
BsnI GGCC 8 cut(s) 285, 344, 435, 978, 1068, 1125, 1154, 1321
Bsp119I TTCGAA 1 cut(s) 210
Bsp120I GGGCCC 1 cut(s) 1123
Bsp1286I GDGCHC 1 cut(s) 1127
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 4 cut(s) 171, 413, 1082, 1135
Bsp19I CCATGG 2 cut(s) 267, 957
BspACI CCGC 4 cut(s) 301, 424, 979, 1431
BspANI GGCC 8 cut(s) 285, 344, 435, 978, 1068, 1125, 1154, 1321
BspCNI CTCAG 1 cut(s) 1005
BspFNI CGCG 2 cut(s) 426, 981
BspLI GGNNCC 4 cut(s) 299, 833, 1125, 1263
BspMAI CTGCAG 2 cut(s) 339, 1327
BspPI GGATC 1 cut(s) 421
BspT104I TTCGAA 1 cut(s) 210
BsrFI RCCGGY 2 cut(s) 1116, 1154
BsrGI TGTACA 1 cut(s) 141
BsrI ACTGG 4 cut(s) 229, 249, 436, 900
BssAI RCCGGY 2 cut(s) 1116, 1154
BssECI CCNNGG 6 cut(s) 267, 309, 436, 712, 796, 957
BssMI GATC 4 cut(s) 171, 413, 1082, 1135
BssT1I CCWWGG 3 cut(s) 267, 309, 957
Bst2UI CCWGG 1 cut(s) 1334
Bst4CI ACNGT 4 cut(s) 106, 713, 931, 1048
Bst6I CTCTTC 2 cut(s) 207, 1302
BstAPI GCANNNNNTGC 1 cut(s) 1101
BstAUI TGTACA 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 1290
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 5 cut(s) 111, 662, 1148, 1152, 1323
BstDEI CTNAG 2 cut(s) 992, 1419
BstDSI CCRYGG 4 cut(s) 267, 436, 712, 957
BstF5I GGATG 2 cut(s) 708, 766
BstFNI CGCG 2 cut(s) 426, 981
BstHHI GCGC 2 cut(s) 428, 826
BstKTI GATC 4 cut(s) 174, 416, 1085, 1138
BstMAI GTCTC 1 cut(s) 1348
BstMBI GATC 4 cut(s) 171, 413, 1082, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 224, 432, 526, 1101
BstNI CCWGG 1 cut(s) 1334
BstNSI RCATGY 1 cut(s) 1150
BstSCI CCNGG 2 cut(s) 795, 1332
BstSFI CTRYAG 2 cut(s) 335, 1323
BstSLI GKGCMC 1 cut(s) 1127
BstUI CGCG 2 cut(s) 426, 981
BstV1I GCAGC 5 cut(s) 82, 211, 321, 343, 1079
BstX2I RGATCY 2 cut(s) 413, 1082
BstXI CCANNNNNNTGG 3 cut(s) 274, 389, 1120
BstYI RGATCY 2 cut(s) 413, 1082
Bsu36I CCTNAGG 1 cut(s) 992
BsuI GTATCC 1 cut(s) 1302
BsuRI GGCC 8 cut(s) 285, 344, 435, 978, 1068, 1125, 1154, 1321
BtgI CCRYGG 4 cut(s) 267, 436, 712, 957
BtrI CACGTC 1 cut(s) 1240
BtsCI GGATG 2 cut(s) 708, 766
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 5 cut(s) 111, 662, 1148, 1152, 1323
CfoI GCGC 2 cut(s) 428, 826
Cfr10I RCCGGY 2 cut(s) 1116, 1154
Cfr13I GGNCC 2 cut(s) 1123, 1124
CseI GACGC 1 cut(s) 1354
Csp6I GTAC 1 cut(s) 142
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 992, 1419
DpnI GATC 4 cut(s) 173, 415, 1084, 1137
DpnII GATC 4 cut(s) 171, 413, 1082, 1135
DraIII CACNNNGTG 1 cut(s) 502
EaeI YGGCCR 2 cut(s) 433, 976
Eam1104I CTCTTC 2 cut(s) 207, 1302
EarI CTCTTC 2 cut(s) 207, 1302
Eco130I CCWWGG 3 cut(s) 267, 309, 957
Eco147I AGGCCT 1 cut(s) 1321
Eco24I GRGCYC 1 cut(s) 1127
Eco32I GATATC 1 cut(s) 729
Eco81I CCTNAGG 1 cut(s) 992
EcoO109I RGGNCCY 1 cut(s) 1124
EcoRI GAATTC 1 cut(s) 804
EcoRII CCWGG 1 cut(s) 1332
EcoRV GATATC 1 cut(s) 729
EcoT14I CCWWGG 3 cut(s) 267, 309, 957
EcoT38I GRGCYC 1 cut(s) 1127
ErhI CCWWGG 3 cut(s) 267, 309, 957
FaqI GGGAC 1 cut(s) 1237
Fnu4HI GCNGC 6 cut(s) 71, 225, 332, 335, 979, 1093
FokI GGATG 2 cut(s) 715, 773
FriOI GRGCYC 1 cut(s) 1127
Fsp4HI GCNGC 6 cut(s) 71, 225, 332, 335, 979, 1093
FspBI CTAG 3 cut(s) 287, 1170, 1227
GlaI GCGC 2 cut(s) 427, 825
GluI GCNGC 6 cut(s) 71, 225, 332, 335, 979, 1093
GsaI CCCAGC 1 cut(s) 1124
HaeIII GGCC 8 cut(s) 285, 344, 435, 978, 1068, 1125, 1154, 1321
HapII CCGG 3 cut(s) 796, 1117, 1155
HgaI GACGC 1 cut(s) 1354
HhaI GCGC 2 cut(s) 428, 826
Hin6I GCGC 2 cut(s) 426, 824
HinP1I GCGC 2 cut(s) 426, 824
HindIII AAGCTT 1 cut(s) 1404
HinfI GANTC 9 cut(s) 181, 480, 523, 543, 554, 749, 1174, 1182, 1337
HpaII CCGG 3 cut(s) 796, 1117, 1155
HphI GGTGA 3 cut(s) 326, 723, 980
Hpy166II GTNNAC 4 cut(s) 451, 859, 893, 965
Hpy188I TCNGA 7 cut(s) 40, 469, 1082, 1135, 1140, 1164, 1277
Hpy188III TCNNGA 3 cut(s) 809, 1000, 1042
Hpy8I GTNNAC 4 cut(s) 451, 859, 893, 965
HpyAV CCTTC 5 cut(s) 217, 387, 1137, 1159, 1342
HpyCH4III ACNGT 4 cut(s) 106, 713, 931, 1048
HpyCH4IV ACGT 3 cut(s) 136, 1239, 1289
HpyCH4V TGCA 8 cut(s) 70, 331, 337, 458, 1095, 1150, 1325, 1344
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 432, 526, 1101
HpyF3I CTNAG 2 cut(s) 992, 1419
HpySE526I ACGT 3 cut(s) 136, 1239, 1289
HspAI GCGC 2 cut(s) 426, 824
Kzo9I GATC 4 cut(s) 171, 413, 1082, 1135
LmnI GCTCC 2 cut(s) 634, 1193
Lsp1109I GCAGC 5 cut(s) 82, 211, 321, 343, 1079
LweI GCATC 1 cut(s) 1422
MaeI CTAG 3 cut(s) 287, 1170, 1227
MaeII ACGT 3 cut(s) 136, 1239, 1289
MaeIII GTNAC 3 cut(s) 100, 494, 925
MalI GATC 4 cut(s) 173, 415, 1084, 1137
MboI GATC 4 cut(s) 171, 413, 1082, 1135
MboII GAAGA 9 cut(s) 224, 346, 776, 813, 926, 981, 1122, 1226, 1289
MflI RGATCY 2 cut(s) 413, 1082
MhlI GDGCHC 1 cut(s) 1127
MluCI AATT 8 cut(s) 317, 472, 669, 694, 804, 852, 1386, 1434
MlyI GAGTC 2 cut(s) 474, 552
MmeI TCCRAC 2 cut(s) 388, 492
MnlI CCTC 7 cut(s) 208, 355, 404, 788, 1001, 1305, 1311
MroXI GAANNNNTTC 2 cut(s) 296, 1014
MseI TTAA 1 cut(s) 1382
MslI CAYNNNNRTG 3 cut(s) 149, 272, 387
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 3 cut(s) 796, 1117, 1155
MspR9I CCNGG 2 cut(s) 797, 1334
Mva1269I GAATGC 1 cut(s) 1308
MvaI CCWGG 1 cut(s) 1334
MvnI CGCG 2 cut(s) 426, 981
MwoI GCNNNNNNNGC 4 cut(s) 224, 432, 526, 1101
NciI CCSGG 1 cut(s) 797
NcoI CCATGG 2 cut(s) 267, 957
NdeII GATC 4 cut(s) 171, 413, 1082, 1135
NlaIV GGNNCC 4 cut(s) 299, 833, 1125, 1263
NmuCI GTSAC 1 cut(s) 494
NspI RCATGY 1 cut(s) 1150
NspV TTCGAA 1 cut(s) 210
PaeI GCATGC 1 cut(s) 1150
PceI AGGCCT 1 cut(s) 1321
PctI GAATGC 1 cut(s) 1308
PdmI GAANNNNTTC 2 cut(s) 296, 1014
PfeI GAWTC 7 cut(s) 181, 523, 554, 749, 1174, 1182, 1337
PflFI GACNNNGTC 1 cut(s) 1364
PfoI TCCNGGA 1 cut(s) 1332
PkrI GCNGC 6 cut(s) 72, 226, 333, 336, 980, 1094
PleI GAGTC 2 cut(s) 474, 551
PpsI GAGTC 2 cut(s) 474, 551
Ppu21I YACGTR 1 cut(s) 1290
Psp6I CCWGG 1 cut(s) 1332
PspFI CCCAGC 1 cut(s) 1120
PspGI CCWGG 1 cut(s) 1332
PspN4I GGNNCC 4 cut(s) 299, 833, 1125, 1263
PspOMI GGGCCC 1 cut(s) 1123
PspPI GGNCC 2 cut(s) 1123, 1124
PstI CTGCAG 2 cut(s) 339, 1327
PsuI RGATCY 2 cut(s) 413, 1082
PsyI GACNNNGTC 1 cut(s) 1364
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 3 cut(s) 149, 272, 387
SaqAI TTAA 1 cut(s) 1382
SatI GCNGC 6 cut(s) 71, 225, 332, 335, 979, 1093
Sau3AI GATC 4 cut(s) 171, 413, 1082, 1135
Sau96I GGNCC 2 cut(s) 1123, 1124
SchI GAGTC 2 cut(s) 474, 552
ScrFI CCNGG 2 cut(s) 797, 1334
SduI GDGCHC 1 cut(s) 1127
SfaNI GCATC 1 cut(s) 1422
SfcI CTRYAG 2 cut(s) 335, 1323
SfuI TTCGAA 1 cut(s) 210
SmiMI CAYNNNNRTG 3 cut(s) 149, 272, 387
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
SpeI ACTAGT 1 cut(s) 1226
SphI GCATGC 1 cut(s) 1150
Sse9I AATT 8 cut(s) 317, 472, 669, 694, 804, 852, 1386, 1434
SseBI AGGCCT 1 cut(s) 1321
SsiI CCGC 4 cut(s) 301, 424, 979, 1431
SspMI CTAG 3 cut(s) 287, 1170, 1227
StuI AGGCCT 1 cut(s) 1321
StyD4I CCNGG 2 cut(s) 795, 1332
StyI CCWWGG 3 cut(s) 267, 309, 957
TaaI ACNGT 4 cut(s) 106, 713, 931, 1048
TaiI ACGT 3 cut(s) 139, 1242, 1292
TaqI TCGA 2 cut(s) 210, 1401
TasI AATT 8 cut(s) 317, 472, 669, 694, 804, 852, 1386, 1434
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 7 cut(s) 181, 523, 554, 749, 1174, 1182, 1337
Tru1I TTAA 1 cut(s) 1382
Tru9I TTAA 1 cut(s) 1382
TscAI CASTG 1 cut(s) 310
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 5 cut(s) 70, 224, 331, 334, 1092
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 6 cut(s) 17, 574, 625, 777, 1021, 1414
TspGWI ACGGA 3 cut(s) 95, 423, 636
TspRI CASTG 1 cut(s) 310
Tth111I GACNNNGTC 1 cut(s) 1364
XapI RAATTY 3 cut(s) 317, 804, 1386
XceI RCATGY 1 cut(s) 1150
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmnI GAANNNNTTC 2 cut(s) 296, 1014
XspI CTAG 3 cut(s) 287, 1170, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.