Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

46272015 .. 46273894

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGAGTGGATTGGAAATGAAGATTCTGGAGAACTCCTCCATACATAACACCAAGGTTTCTGGAGAGTCTTTGGCTATGGAGTCTGCTTTTCAACTGGGCTTGTTACCAATGCTTCCCATTGTGATGGAAATTGGTCTGGAAAAGGAGTTCCACAATGCCTTGGGTGATTTCATACTCATGCAGCTCCAGCTGGCCTCTGTTTTCTTCACATTTCAAATAGGAACAAAAGCACATTATTACAGAAGGACAATCTTACGTGGAGGATTAAAACCCAAAGCAACTGGCCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003843 GO:0006810 GO:0008150 GO:0008194 GO:0010232 GO:0010233 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0033036 GO:0033037 GO:0035251 GO:0046527 GO:0051179 GO:0051234 GO:0052545 GO:0080165

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

97

Amino Acids

10.81

Weight (kDa)

8.11

Isoelectric Point (pI)

46.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glucan_synthase	PF02364	28 - 96	1.7e-09	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	92, 215
AloI	GAACNNNNNNTCC	2 cut(s)	131, 163
AluBI	AGCT	2 cut(s)	184, 190
AluI	AGCT	2 cut(s)	184, 190
AoxI	GGCC	2 cut(s)	192, 283
ApeKI	GCWGC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	285
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	1 cut(s)	118
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmrI	ACTGGG	1 cut(s)	104
BmuI	ACTGGG	1 cut(s)	104
BplI	GAGNNNNNCTC	2 cut(s)	20, 52
BpmI	CTGGAG	3 cut(s)	47, 81, 170
BsaAI	YACGTR	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	51, 159
Bse1I	ACTGG	2 cut(s)	99, 286
BseDI	CCNNGG	2 cut(s)	51, 159
BseNI	ACTGG	2 cut(s)	99, 286
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	194, 285
BsnI	GGCC	2 cut(s)	194, 285
BspANI	GGCC	2 cut(s)	194, 285
BsrI	ACTGG	2 cut(s)	99, 286
BssECI	CCNNGG	2 cut(s)	51, 159
BssT1I	CCWWGG	2 cut(s)	51, 159
BstBAI	YACGTR	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	194, 285
Cac8I	GCNNGC	1 cut(s)	192
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	6 cut(s)	74, 99, 184, 190, 194, 285
CviKI_1	RGCY	6 cut(s)	74, 99, 184, 190, 194, 285
EaeI	YGGCCR	1 cut(s)	283
Eco130I	CCWWGG	2 cut(s)	51, 159
EcoT14I	CCWWGG	2 cut(s)	51, 159
ErhI	CCWWGG	2 cut(s)	51, 159
FaeI	CATG	1 cut(s)	181
FaiI	YATR	6 cut(s)	41, 45, 77, 173, 179, 288
FatI	CATG	1 cut(s)	177
Fnu4HI	GCNGC	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
GsuI	CTGGAG	3 cut(s)	47, 81, 170
HaeIII	GGCC	2 cut(s)	194, 285
Hin1II	CATG	1 cut(s)	181
HinfI	GANTC	3 cut(s)	22, 65, 80
HphI	GGTGA	1 cut(s)	176
Hpy188III	TCNNGA	3 cut(s)	26, 60, 137
HpyAV	CCTTC	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	256
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpySE526I	ACGT	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	189
LpnPI	CCDG	7 cut(s)	11, 45, 80, 122, 176, 200, 267
Lsp1109I	GCAGC	1 cut(s)	193
MaeII	ACGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	102
MboII	GAAGA	2 cut(s)	31, 196
MlsI	TGGCCA	1 cut(s)	285
MluCI	AATT	2 cut(s)	129, 289
MluNI	TGGCCA	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	74, 89
MnlI	CCTC	3 cut(s)	46, 205, 254
Mox20I	TGGCCA	1 cut(s)	285
MscI	TGGCCA	1 cut(s)	285
MseI	TTAA	2 cut(s)	266, 292
MslI	CAYNNNNRTG	2 cut(s)	122, 176
Msp20I	TGGCCA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	187
NlaIII	CATG	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	2 cut(s)	73, 88
PpsI	GAGTC	2 cut(s)	73, 88
Ppu21I	YACGTR	1 cut(s)	257
PvuII	CAGCTG	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	122, 176
SaqAI	TTAA	2 cut(s)	266, 292
SatI	GCNGC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	74, 89
SetI	ASST	4 cut(s)	57, 186, 192, 259
SmiMI	CAYNNNNRTG	2 cut(s)	122, 176
Sse9I	AATT	2 cut(s)	129, 289
StyI	CCWWGG	2 cut(s)	51, 159
TaiI	ACGT	1 cut(s)	259
TasI	AATT	2 cut(s)	129, 289
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	266, 292
Tru9I	TTAA	2 cut(s)	266, 292
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	32, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.