Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

46098421 .. 46100899

Gene Structure 2479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG331800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGAGAGCTTCTGGGATTAGTCCTACTGTAATTGACTACAACACTTTGATGTCATCGTTGTGCAAGGAGGGTAGTTTGGAGCAAGCTAGGATGTTGTTTCAAGAAATGAGAACTGTAAATCATTCACCTTGTGTTGTCTCATTTAATACCATAATTGACGGACTTCTTAAAGCTGGAGATATTAAATCTACTAAAGAGCTGCTAGAGGATATGTTCAAATTGGGTTTAATTCCCGATAGAATTACTTTCTCTACATTAGTGAACCGGTTTTCAAAACTTGGGCTATTGGCTGAGGCTAGAATGTGCATTGAGAAGATGATTGCTCGTGGTATTGAACCTGATGTCTTTGTATTCGATTCTTTATTAAAAGGCTACAGTTCTAAAGGTGAAACAGAAGAAATTGTTAATTTGCTTCATCAGATGGCAGAAAAGGGTGTTGTTCTTGACAAAGATATCACTTCTACCATCTTGGCGTGCCTCTGTCAAATCTCTGATGATGTTGATGTGATGGAGAAGTGTGTTGCTGTCTATGTGCTATGCTATGTTGCTGTGCTGACTGTGTTTGCCTTTTTATATGGACGTTTTTATCTGGTTATGAGTGGATTGGAAATGAAGATTCTGGAGAACTCCTCCATACATAACACCAAGGTTTCTGGAGAGTCTTTGGCTATGGAGTCTGCTTTTCAACTGGGCTTGTTACCAATGCTTCCCATTGTGATGGAAATTGGTCTGGAAAAGGAGTTCCACAATGCCTTGGGTGATTTCATACTCATGCAGCTCCAGCTGGCCTCTGTTTTCTTCACATTTCAAATAGGAACAAAAGCACATTATTACAGAAGGACAATCTTACGTGGAGGATTAAAACCCAAAGCAACTGGCCATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003843 GO:0006810 GO:0008150 GO:0008194 GO:0010232 GO:0010233 GO:0016740 GO:0016757 GO:0016758 GO:0032501 GO:0033036 GO:0033037 GO:0035251 GO:0046527 GO:0051179 GO:0051234 GO:0052545 GO:0080165

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase Vta1

Protein Analysis

295

Amino Acids

32.88

Weight (kDa)

5.91

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	1 - 52	1.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	5 - 37	3.8e-10	PPR repeat
PPR_2	PF13041	8 - 43	4.5e-07	PPR repeat family
PPR	PF01535	13 - 38	1.2e-06	PPR repeat
PPR_long	PF17177	24 - 144	3.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	43 - 92	1.4e-12	PPR repeat family
PPR_2	PF13041	113 - 161	2.3e-06	PPR repeat family
Glucan_synthase	PF02364	224 - 294	1.6e-08	1,3-beta-glucan synthase component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	877
AdeI	CACNNNGTG	1 cut(s)	131
AgeI	ACCGGT	1 cut(s)	264
AgsI	TTSAA	6 cut(s)	101, 217, 273, 335, 686, 809
AloI	GAACNNNNNNTCC	2 cut(s)	725, 757
AluBI	AGCT	6 cut(s)	8, 86, 173, 199, 778, 784
AluI	AGCT	6 cut(s)	8, 86, 173, 199, 778, 784
Alw26I	GTCTC	1 cut(s)	142
AoxI	GGCC	2 cut(s)	786, 877
ApeKI	GCWGC	2 cut(s)	199, 775
AsiGI	ACCGGT	1 cut(s)	264
AsuHPI	GGTGA	3 cut(s)	117, 398, 770
BalI	TGGCCA	1 cut(s)	879
BauI	CACGAG	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	186, 787
BccI	CCATC	4 cut(s)	415, 473, 502, 712
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	3 cut(s)	87, 203, 297
BfmI	CTRYAG	1 cut(s)	373
BisI	GCNGC	2 cut(s)	200, 776
BlsI	GCNGC	2 cut(s)	201, 777
BmrI	ACTGGG	1 cut(s)	698
BmuI	ACTGGG	1 cut(s)	698
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	4 cut(s)	195, 641, 675, 764
Bpu10I	CCTNAGC	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	851
BsaJI	CCNNGG	2 cut(s)	645, 753
BsaWI	WCCGGW	1 cut(s)	264
Bse118I	RCCGGY	1 cut(s)	264
Bse1I	ACTGG	2 cut(s)	693, 880
BseDI	CCNNGG	2 cut(s)	645, 753
BseGI	GGATG	1 cut(s)	96
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	693, 880
BseRI	GAGGAG	1 cut(s)	619
BseXI	GCAGC	2 cut(s)	186, 787
BshFI	GGCC	2 cut(s)	788, 879
BshTI	ACCGGT	1 cut(s)	264
BsiSI	CCGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	788, 879
BspANI	GGCC	2 cut(s)	788, 879
BspCNI	CTCAG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	693, 880
BssAI	RCCGGY	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	645, 753
BssSI	CACGAG	1 cut(s)	324
BssT1I	CCWWGG	2 cut(s)	645, 753
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	4 cut(s)	28, 115, 377, 559
BstBAI	YACGTR	1 cut(s)	851
BstC8I	GCNNGC	3 cut(s)	84, 475, 786
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	1 cut(s)	781
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	186, 787
BstXI	CCANNNNNNTGG	1 cut(s)	718
BsuRI	GGCC	2 cut(s)	788, 879
BtsCI	GGATG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	84, 475, 786
Cfr10I	RCCGGY	1 cut(s)	264
CspAI	ACCGGT	1 cut(s)	264
CviAII	CATG	1 cut(s)	772
DdeI	CTNAG	1 cut(s)	291
DraIII	CACNNNGTG	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	877
Eco130I	CCWWGG	2 cut(s)	645, 753
Eco32I	GATATC	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	645, 753
ErhI	CCWWGG	2 cut(s)	645, 753
FaeI	CATG	1 cut(s)	775
FatI	CATG	1 cut(s)	771
Fnu4HI	GCNGC	2 cut(s)	200, 776
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	2 cut(s)	200, 776
FspBI	CTAG	3 cut(s)	87, 203, 297
GluI	GCNGC	2 cut(s)	200, 776
GsuI	CTGGAG	4 cut(s)	195, 641, 675, 764
HaeIII	GGCC	2 cut(s)	788, 879
HapII	CCGG	1 cut(s)	265
Hin1II	CATG	1 cut(s)	775
HinfI	GANTC	4 cut(s)	356, 616, 659, 674
HpaII	CCGG	1 cut(s)	265
HphI	GGTGA	3 cut(s)	117, 398, 770
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	2 cut(s)	420, 493
Hpy188III	TCNNGA	6 cut(s)	101, 233, 443, 620, 654, 731
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	831
HpyCH4III	ACNGT	4 cut(s)	28, 115, 377, 559
HpyCH4IV	ACGT	2 cut(s)	580, 850
HpyCH4V	TGCA	3 cut(s)	63, 306, 775
HpyF10VI	GCNNNNNNNGC	1 cut(s)	781
HpyF3I	CTNAG	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	580, 850
Hsp92II	CATG	1 cut(s)	775
LmnI	GCTCC	2 cut(s)	79, 783
Lsp1109I	GCAGC	2 cut(s)	186, 787
MaeI	CTAG	3 cut(s)	87, 203, 297
MaeII	ACGT	2 cut(s)	580, 850
MaeIII	GTNAC	1 cut(s)	696
MboII	GAAGA	4 cut(s)	325, 407, 625, 790
MlsI	TGGCCA	1 cut(s)	879
MluCI	AATT	9 cut(s)	30, 153, 218, 228, 240, 399, 406, 723, 883
MluNI	TGGCCA	1 cut(s)	879
MlyI	GAGTC	2 cut(s)	668, 683
MnlI	CCTC	7 cut(s)	61, 199, 286, 488, 640, 799, 848
Mox20I	TGGCCA	1 cut(s)	879
MscI	TGGCCA	1 cut(s)	879
MseI	TTAA	8 cut(s)	144, 168, 183, 227, 365, 405, 860, 886
MslI	CAYNNNNRTG	4 cut(s)	47, 58, 716, 770
Msp20I	TGGCCA	1 cut(s)	879
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	781
NlaIII	CATG	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	356, 616
PinAI	ACCGGT	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	201, 777
PleI	GAGTC	2 cut(s)	667, 682
PpsI	GAGTC	2 cut(s)	667, 682
Ppu21I	YACGTR	1 cut(s)	851
PvuII	CAGCTG	1 cut(s)	784
RseI	CAYNNNNRTG	4 cut(s)	47, 58, 716, 770
SaqAI	TTAA	8 cut(s)	144, 168, 183, 227, 365, 405, 860, 886
SatI	GCNGC	2 cut(s)	200, 776
SchI	GAGTC	2 cut(s)	668, 683
SfcI	CTRYAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	4 cut(s)	47, 58, 716, 770
Sse9I	AATT	9 cut(s)	30, 153, 218, 228, 240, 399, 406, 723, 883
SspMI	CTAG	3 cut(s)	87, 203, 297
StyI	CCWWGG	2 cut(s)	645, 753
TaaI	ACNGT	4 cut(s)	28, 115, 377, 559
TaiI	ACGT	2 cut(s)	583, 853
TaqI	TCGA	1 cut(s)	354
TasI	AATT	9 cut(s)	30, 153, 218, 228, 240, 399, 406, 723, 883
TfiI	GAWTC	2 cut(s)	356, 616
Tru1I	TTAA	8 cut(s)	144, 168, 183, 227, 365, 405, 860, 886
Tru9I	TTAA	8 cut(s)	144, 168, 183, 227, 365, 405, 860, 886
TseI	GCWGC	2 cut(s)	199, 775
TspDTI	ATGAA	3 cut(s)	404, 626, 754
TspGWI	ACGGA	1 cut(s)	174
XspI	CTAG	3 cut(s)	87, 203, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.