Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002867.1

Orthogroup ID

OG0006955

Physical Location & Seq

Genomic Coordinates Forward (+)

107528 .. 110741

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002867.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgaataagatcaagattgagaagatcgaaaacctgccggcgaggcaggtgacgttttcaaagaggagacaagggctgttcaagaaagccggagaattatcagttctctgcgacgctgaggttgctgtcatcgtcttttcttctactggcaagctctacgagtcctccagctccaggtacttctctaccatggacattagggaaggttcacaagaaattggttctatgatgcgagccattggtttagacggtttgacctcagagagatatatgcatggaacacaaaaggcaaagaaagatccccctgctgatgaaattttgtatctaatgaaaaccaatggagcacttcaaattgcctatgttgaggaggtttcaactggcagggatgagaaggaatattattctgttcttgtcaagtatgataatcaattagagaaagaaatggaaatctatcgcattaagttacctagtcctttgaagctcggagagggcaaaccggagaatcaaaatcatgccattatcttcactcgtggtgatgcggttcagatcattgatatgaaccaagacaattattttgaggaggcactcaaaatgaggaatctattagaagaatacaggcactatcatggtatccggaagcttacgatcttgggagttagggagcatgtctttactggttctgtttcacacttgcttggtttatgtcaggtcaggaaacaagttgtcatcttaggacagcaggtgttggtaaatcctttgcaagttcgaatgcattatggtcatccagatgtctttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009555 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009863 GO:0009870 GO:0009965 GO:0009987 GO:0010016 GO:0010033 GO:0010150 GO:0012505 GO:0014070 GO:0016020 GO:0016043 GO:0023052 GO:0030054 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032870 GO:0033036 GO:0033037 GO:0033554 GO:0035690 GO:0042221 GO:0042493 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0045229 GO:0046677 GO:0048229 GO:0048366 GO:0048367 GO:0048518 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0055044 GO:0065007 GO:0070727 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0071944 GO:0080134 GO:0090693 GO:0098542 GO:0099402 GO:1901700 GO:1901701 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKS1_dom1 Glucan_synthase

Protein Analysis

266

Amino Acids

30.45

Weight (kDa)

7.76

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006955)

Species	Orthologous Gene IDs
malus_domestica	MD07G1002000.v1.1 MD09G1150200.v1.1
pyrus_communis	pycom01g02050 pycom01g02060 pycom09g06990 pycom09g07000 pycom09g07010 pycom09g16470 pycom17g13090
rosa_chinensis	RchiOBHm_Chr1g0313351 RchiOBHm_Chr5g0048951 RchiOBHm_Chr7g0233651
rosa_laevigata	RLG00000020576 RLG00000020577
rosa_multiflora	Rmu_sc0002867.1_g000023 Rmu_sc0016396.1_g000003 Rmu_sc0028569.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078910 Rroxscaffold_2G00078920
rosa_samantha	Rh4BG039900 Rh4BG040000 Rh5BG331800 Rh5CG435600 Rh5DG343600 Rh7CG428300
rosa_wichuraiana	Rw5G049220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	37, 730
Acc36I	ACCTGC	3 cut(s)	37, 42, 730
AccIII	TCCGGA	1 cut(s)	633
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	315
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	5 cut(s)	60, 82, 350, 375, 478
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	4 cut(s)	154, 171, 481, 640
AluI	AGCT	4 cut(s)	154, 171, 481, 640
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	293
Aor13HI	TCCGGA	1 cut(s)	633
ApoI	RAATTY	1 cut(s)	315
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AsuHPI	GGTGA	2 cut(s)	61, 545
AsuII	TTCGAA	1 cut(s)	766
BauI	CACGAG	1 cut(s)	528
Bbv12I	GWGCWC	1 cut(s)	346
BbvCI	CCTCAGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	175
BciVI	GTATCC	1 cut(s)	641
BcoDI	GTCTC	1 cut(s)	61
BfaI	CTAG	1 cut(s)	468
BfuAI	ACCTGC	3 cut(s)	37, 42, 730
BfuI	GTATCC	1 cut(s)	641
BglI	GCCNNNNNGGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	219, 526
BpmI	CTGGAG	2 cut(s)	151, 157
Bpu10I	CCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	766
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	2 cut(s)	496, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	151, 382, 679
BseAI	TCCGGA	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	2 cut(s)	391, 781
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	2 cut(s)	108, 273
BseNI	ACTGG	3 cut(s)	151, 382, 679
BseRI	GAGGAG	3 cut(s)	79, 380, 593
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	4 cut(s)	38, 90, 497, 634
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	774
Bsp119I	TTCGAA	1 cut(s)	766
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	633
Bsp143I	GATC	5 cut(s)	9, 24, 298, 546, 645
Bsp19I	CCATGG	1 cut(s)	189
BspACI	CCGC	1 cut(s)	539
BspCNI	CTCAG	2 cut(s)	109, 272
BspEI	TCCGGA	1 cut(s)	633
BspMI	ACCTGC	3 cut(s)	37, 42, 730
BspPI	GGATC	1 cut(s)	293
BspT104I	TTCGAA	1 cut(s)	766
BsrFI	RCCGGY	1 cut(s)	37
BsrI	ACTGG	3 cut(s)	151, 382, 679
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	5 cut(s)	9, 24, 298, 546, 645
BssSI	CACGAG	1 cut(s)	528
BssT1I	CCWWGG	1 cut(s)	189
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	766
BstC8I	GCNNGC	3 cut(s)	39, 152, 234
BstDEI	CTNAG	3 cut(s)	117, 259, 730
BstDSI	CCRYGG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	391, 781
BstKTI	GATC	5 cut(s)	12, 27, 301, 549, 648
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	5 cut(s)	9, 24, 298, 546, 645
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 122
BstNI	CCWGG	1 cut(s)	175
BstNSI	RCATGY	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	173
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	641
BtgI	CCRYGG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	391, 781
BveI	ACCTGC	3 cut(s)	37, 42, 730
Cac8I	GCNNGC	3 cut(s)	39, 152, 234
Cfr10I	RCCGGY	1 cut(s)	37
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	5 cut(s)	190, 275, 512, 626, 665
CviJI	RGCY	7 cut(s)	76, 89, 154, 171, 236, 481, 640
CviKI_1	RGCY	7 cut(s)	76, 89, 154, 171, 236, 481, 640
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	3 cut(s)	117, 259, 730
DpnI	GATC	5 cut(s)	11, 26, 300, 548, 647
DpnII	GATC	5 cut(s)	9, 24, 298, 546, 645
Eco130I	CCWWGG	1 cut(s)	189
EcoRII	CCWGG	1 cut(s)	173
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	2 cut(s)	276, 774
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	5 cut(s)	193, 278, 515, 629, 668
FatI	CATG	5 cut(s)	189, 274, 511, 625, 664
FokI	GGATG	2 cut(s)	398, 768
FspBI	CTAG	1 cut(s)	468
GsuI	CTGGAG	2 cut(s)	151, 157
HapII	CCGG	4 cut(s)	38, 90, 497, 634
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	5 cut(s)	193, 278, 515, 629, 668
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	3 cut(s)	161, 502, 598
HpaII	CCGG	4 cut(s)	38, 90, 497, 634
HphI	GGTGA	2 cut(s)	61, 545
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	262, 485, 546
Hpy188III	TCNNGA	5 cut(s)	13, 82, 634, 712, 785
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	197, 385
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	274, 760, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 122
HpyF3I	CTNAG	3 cut(s)	117, 259, 730
HpySE526I	ACGT	1 cut(s)	53
Hsp92II	CATG	5 cut(s)	193, 278, 515, 629, 668
Kpn2I	TCCGGA	1 cut(s)	633
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	9, 24, 298, 546, 645
LmnI	GCTCC	3 cut(s)	176, 341, 661
LweI	GCATC	2 cut(s)	219, 526
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	1 cut(s)	53
MaeIII	GTNAC	2 cut(s)	49, 462
MalI	GATC	5 cut(s)	11, 26, 300, 548, 647
MboI	GATC	5 cut(s)	9, 24, 298, 546, 645
MboII	GAAGA	4 cut(s)	34, 132, 514, 620
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	6 cut(s)	95, 216, 315, 351, 428, 568
MlyI	GAGTC	1 cut(s)	170
Mph1103I	ATGCAT	2 cut(s)	276, 774
MroI	TCCGGA	1 cut(s)	633
MroNI	GCCGGC	1 cut(s)	37
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	3 cut(s)	554, 624, 786
MspI	CCGG	4 cut(s)	38, 90, 497, 634
MspR9I	CCNGG	1 cut(s)	175
Mva1269I	GAATGC	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	43, 122
NaeI	GCCGGC	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	189
NdeII	GATC	5 cut(s)	9, 24, 298, 546, 645
NgoMIV	GCCGGC	1 cut(s)	37
NlaIII	CATG	5 cut(s)	193, 278, 515, 629, 668
NmuCI	GTSAC	1 cut(s)	49
NsiI	ATGCAT	2 cut(s)	276, 774
NspI	RCATGY	1 cut(s)	668
NspV	TTCGAA	1 cut(s)	766
PaqCI	CACCTGC	2 cut(s)	37, 730
PctI	GAATGC	1 cut(s)	774
PdiI	GCCGGC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	502, 598
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
RseI	CAYNNNNRTG	3 cut(s)	554, 624, 786
SaqAI	TTAA	1 cut(s)	459
Sau3AI	GATC	5 cut(s)	9, 24, 298, 546, 645
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	1 cut(s)	175
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	219, 526
SfuI	TTCGAA	1 cut(s)	766
SmiMI	CAYNNNNRTG	3 cut(s)	554, 624, 786
Sse9I	AATT	6 cut(s)	95, 216, 315, 351, 428, 568
SsiI	CCGC	1 cut(s)	539
SspI	AATATT	1 cut(s)	398
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	56
TaqI	TCGA	2 cut(s)	27, 766
TasI	AATT	6 cut(s)	95, 216, 315, 351, 428, 568
TfiI	GAWTC	2 cut(s)	502, 598
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	17, 327, 344, 572
XapI	RAATTY	1 cut(s)	315
XceI	RCATGY	1 cut(s)	668
XspI	CTAG	1 cut(s)	468
Zsp2I	ATGCAT	2 cut(s)	276, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.