pycom01g07960

Acyclic terpene utilisation family protein AtuA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0002235
Physical Location & Seq
Forward (+)
8965722 .. 8967278
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g07960.1

Sequence Viewer

Length: 942 bp
ATGGCGGATATGAATGCGTTAAACGTGCCAAGGCTGCAGAGTTTCTGGTTAGATCGATGGATTGAAGAAGTAATTCCTGGTGTTAGCAGCCATGTAATTTCATATATAATTGGGCTTGATAGCCTGAAGGCAACCAGTCTTAGTGACAATGCTTCATCTCGGATGGTTAGCGACATCAGGTTACGCATGGATGGGTTATTCAAGCTAAAGGAACATGCAGTCCAATTTATTAGAGAGTTTACTGCTTTGTATACAAATGGACCAGCTGGCGGCGGTGGTATCAGCACTGGACACAAGAAAGAGATAATCCTTGAAAAATATTTGGTCAAGCGGGAACACGTACTATGGCGGACTGCAGTAAAGCACACCAAAGCGATAGATTCAAGTAATTTAGGAATCCGAGTTGAAGGTGGCACAAATATCTGTCCTCTGTATGAGTCTGCCTTGCCAATGACACATTCTAATGAAGTCAATTCTTCTACAAATTTGGATAACCGATTTTCTGGAAGTGCAAAATCTCCTGCTCCATCTGGTCGGAAGATTCCACTCTATGATGTAGCAGATGTCCGGGCTGGAGACAAAGGAAATGACTTGAATTTTTCCATCATCCCTCATTTTCCTCCAGATATAGTGAGATTAAAGTCGATCGTAACACCCCAGTGGGTAAAGCAAGTGGTCTCAGCCCTTCTAAACTCGTCTTCGTTCCCAGACATGGATGCTATCGACGAAAGAGACAAATGGATCCATGAAAATGTAAAGGTGGAAATTTATGAAGTTAGGGGAATCCGATCACTAAATGTTGTGGTTCGGGGCATTCTTGACGGTGGTGTAAACTGCTCTAGAAGGATTGACCGACACGGAAAGACCACCTCAGATCTCATACTGTGCCAGCAAGTTGTGTTGCCTCCATGGTTGGGTCGTTCCAATACTCTTATAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AtuA

Protein Analysis

314

Amino Acids

34.73

Weight (kDa)

8.9

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtuA_ferredoxin PF23544 181 - 299 7.9e-43 AtuA ferredoxin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 251
AciI CCGC 5 cut(s) 5, 270, 273, 331, 349
AclWI GGATC 2 cut(s) 736, 749
AcsI RAATTY 3 cut(s) 484, 595, 765
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 3 cut(s) 269, 712, 914
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 6 cut(s) 65, 202, 314, 384, 407, 595
AjnI CCWGG 1 cut(s) 76
AjuI GAANNNNNNNTTGG 2 cut(s) 442, 474
AleI CACNNNNGTG 1 cut(s) 658
AloI GAACNNNNNNTCC 2 cut(s) 204, 236
AluBI AGCT 2 cut(s) 205, 266
AluI AGCT 2 cut(s) 205, 266
Alw26I GTCTC 3 cut(s) 570, 682, 726
AlwI GGATC 2 cut(s) 736, 749
ApeKI GCWGC 2 cut(s) 34, 87
ApoI RAATTY 3 cut(s) 484, 595, 765
Asp700I GAANNNNTTC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 260
BamHI GGATCC 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 21, 99
BccI CCATC 5 cut(s) 51, 157, 185, 535, 611
BciT130I CCWGG 1 cut(s) 78
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 3 cut(s) 570, 682, 726
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 2 cut(s) 35, 354
BglII AGATCT 1 cut(s) 874
BisI GCNGC 3 cut(s) 35, 88, 271
BlsI GCNGC 3 cut(s) 36, 89, 272
Bme1390I CCNGG 2 cut(s) 78, 569
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 2 cut(s) 78, 569
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 1 cut(s) 706
BmuI ACTGGG 1 cut(s) 652
BpiI GAAGAC 1 cut(s) 690
BpmI CTGGAG 2 cut(s) 594, 606
BpuMI CCSGG 1 cut(s) 569
Bsa29I ATCGAT 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 682
BsaJI CCNNGG 2 cut(s) 29, 908
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 712, 914
Bse1I ACTGG 3 cut(s) 135, 292, 658
BseBI CCWGG 1 cut(s) 78
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 29, 908
BseGI GGATG 4 cut(s) 168, 196, 606, 721
BseLI CCNNNNNNNGG 3 cut(s) 269, 712, 914
BseMII CTCAG 2 cut(s) 693, 885
BseNI ACTGG 3 cut(s) 135, 292, 658
BseXI GCAGC 2 cut(s) 21, 99
Bsh1285I CGRYCG 1 cut(s) 648
BshVI ATCGAT 1 cut(s) 55
BsiEI CGRYCG 1 cut(s) 648
BsiSI CCGG 1 cut(s) 568
BslI CCNNNNNNNGG 3 cut(s) 269, 712, 914
BsmAI GTCTC 3 cut(s) 570, 682, 726
BsmI GAATGC 2 cut(s) 19, 813
Bso31I GGTCTC 1 cut(s) 682
Bsp143I GATC 5 cut(s) 52, 645, 741, 788, 874
Bsp19I CCATGG 1 cut(s) 908
BspACI CCGC 5 cut(s) 5, 270, 273, 331, 349
BspCNI CTCAG 2 cut(s) 692, 884
BspDI ATCGAT 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 743
BspMAI CTGCAG 2 cut(s) 39, 358
BspPI GGATC 2 cut(s) 736, 749
BspTNI GGTCTC 1 cut(s) 682
BsrI ACTGG 3 cut(s) 135, 292, 658
BssECI CCNNGG 2 cut(s) 29, 908
BssMI GATC 5 cut(s) 52, 645, 741, 788, 874
BssNAI GTATAC 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 29, 908
Bst1107I GTATAC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 824, 885
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 268, 890
BstDEI CTNAG 3 cut(s) 140, 679, 871
BstDSI CCRYGG 1 cut(s) 908
BstF5I GGATG 4 cut(s) 168, 196, 606, 721
BstKTI GATC 5 cut(s) 55, 648, 744, 791, 877
BstMAI GTCTC 3 cut(s) 570, 682, 726
BstMBI GATC 5 cut(s) 52, 645, 741, 788, 874
BstMCI CGRYCG 1 cut(s) 648
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 1 cut(s) 78
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 76, 567
BstSFI CTRYAG 2 cut(s) 35, 354
BstV1I GCAGC 2 cut(s) 21, 99
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 2 cut(s) 741, 874
BstYI RGATCY 2 cut(s) 741, 874
BstZ17I GTATAC 1 cut(s) 252
Bsu15I ATCGAT 1 cut(s) 55
BsuTUI ATCGAT 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 908
BtsCI GGATG 4 cut(s) 168, 196, 606, 721
BtsIMutI CAGTG 2 cut(s) 285, 665
Cac8I GCNNGC 2 cut(s) 268, 890
Cfr13I GGNCC 1 cut(s) 260
ClaI ATCGAT 1 cut(s) 55
Csp6I GTAC 1 cut(s) 341
CviAII CATG 7 cut(s) 92, 187, 215, 712, 746, 909, 939
CviJI RGCY 8 cut(s) 34, 90, 115, 123, 205, 266, 572, 683
CviKI_1 RGCY 8 cut(s) 34, 90, 115, 123, 205, 266, 572, 683
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 3 cut(s) 140, 679, 871
DpnI GATC 5 cut(s) 54, 647, 743, 790, 876
DpnII GATC 5 cut(s) 52, 645, 741, 788, 874
EciI GGCGGA 2 cut(s) 20, 364
Eco130I CCWWGG 2 cut(s) 29, 908
Eco31I GGTCTC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 260
Eco57I CTGAAG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 29, 908
ErhI CCWWGG 2 cut(s) 29, 908
FaeI CATG 7 cut(s) 95, 190, 218, 715, 749, 912, 942
FatI CATG 7 cut(s) 91, 186, 214, 711, 745, 908, 938
FauI CCCGC 1 cut(s) 324
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 35, 88, 271
FokI GGATG 4 cut(s) 175, 203, 593, 728
Fsp4HI GCNGC 3 cut(s) 35, 88, 271
FspBI CTAG 1 cut(s) 840
GluI GCNGC 3 cut(s) 35, 88, 271
GsuI CTGGAG 2 cut(s) 594, 606
HapII CCGG 1 cut(s) 568
Hin1II CATG 7 cut(s) 95, 190, 218, 715, 749, 912, 942
HinfI GANTC 5 cut(s) 380, 396, 437, 541, 783
HpaII CCGG 1 cut(s) 568
Hpy166II GTNNAC 3 cut(s) 240, 252, 832
Hpy188I TCNGA 5 cut(s) 162, 401, 537, 788, 874
Hpy188III TCNNGA 4 cut(s) 504, 623, 818, 840
Hpy8I GTNNAC 3 cut(s) 240, 252, 832
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 4 cut(s) 121, 401, 695, 837
HpyCH4III ACNGT 2 cut(s) 824, 885
HpyCH4IV ACGT 2 cut(s) 24, 339
HpyCH4V TGCA 4 cut(s) 37, 218, 356, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 3 cut(s) 140, 679, 871
HpySE526I ACGT 2 cut(s) 24, 339
Hsp92II CATG 7 cut(s) 95, 190, 218, 715, 749, 912, 942
Kzo9I GATC 5 cut(s) 52, 645, 741, 788, 874
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 2 cut(s) 21, 99
LweI GCATC 1 cut(s) 706
MaeI CTAG 1 cut(s) 840
MaeII ACGT 2 cut(s) 24, 339
MaeIII GTNAC 3 cut(s) 143, 180, 649
MalI GATC 5 cut(s) 54, 647, 743, 790, 876
MboI GATC 5 cut(s) 52, 645, 741, 788, 874
MboII GAAGA 4 cut(s) 77, 468, 550, 690
MflI RGATCY 2 cut(s) 741, 874
MluCI AATT 9 cut(s) 72, 96, 108, 224, 388, 472, 484, 595, 765
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 515
MnlI CCTC 5 cut(s) 438, 621, 630, 880, 915
MroXI GAANNNNTTC 1 cut(s) 72
MseI TTAA 2 cut(s) 20, 638
MslI CAYNNNNRTG 3 cut(s) 462, 658, 750
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 568
MspR9I CCNGG 2 cut(s) 78, 569
Mva1269I GAATGC 2 cut(s) 19, 813
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 569
NcoI CCATGG 1 cut(s) 908
NdeII GATC 5 cut(s) 52, 645, 741, 788, 874
NlaIII CATG 7 cut(s) 95, 190, 218, 715, 749, 912, 942
NlaIV GGNNCC 1 cut(s) 743
NmuCI GTSAC 1 cut(s) 143
NspI RCATGY 1 cut(s) 218
OliI CACNNNNGTG 1 cut(s) 658
PctI GAATGC 2 cut(s) 19, 813
PdmI GAANNNNTTC 1 cut(s) 72
PfeI GAWTC 4 cut(s) 380, 396, 541, 783
PkrI GCNGC 3 cut(s) 36, 89, 272
Ple19I CGATCG 1 cut(s) 648
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Ppu21I YACGTR 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 2 cut(s) 39, 358
PsuI RGATCY 2 cut(s) 741, 874
PvuI CGATCG 1 cut(s) 648
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 3 cut(s) 462, 658, 750
SaqAI TTAA 2 cut(s) 20, 638
SatI GCNGC 3 cut(s) 35, 88, 271
Sau3AI GATC 5 cut(s) 52, 645, 741, 788, 874
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 78, 569
SetI ASST 8 cut(s) 27, 182, 207, 268, 342, 412, 762, 872
SfaNI GCATC 1 cut(s) 706
SfcI CTRYAG 2 cut(s) 35, 354
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 3 cut(s) 462, 658, 750
Sse9I AATT 9 cut(s) 72, 96, 108, 224, 388, 472, 484, 595, 765
SsiI CCGC 5 cut(s) 5, 270, 273, 331, 349
SspI AATATT 1 cut(s) 320
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 2 cut(s) 76, 567
StyI CCWWGG 2 cut(s) 29, 908
TaaI ACNGT 2 cut(s) 824, 885
TaiI ACGT 2 cut(s) 27, 342
TaqI TCGA 3 cut(s) 55, 644, 723
TaqII GACCGA 1 cut(s) 867
TasI AATT 9 cut(s) 72, 96, 108, 224, 388, 472, 484, 595, 765
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 4 cut(s) 380, 396, 541, 783
Tru1I TTAA 2 cut(s) 20, 638
Tru9I TTAA 2 cut(s) 20, 638
TscAI CASTG 2 cut(s) 292, 665
TseFI GTSAC 1 cut(s) 143
TseI GCWGC 2 cut(s) 34, 87
Tsp45I GTSAC 1 cut(s) 143
TspDTI ATGAA 6 cut(s) 26, 90, 144, 480, 762, 786
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 2 cut(s) 292, 665
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 3 cut(s) 484, 595, 765
XbaI TCTAGA 1 cut(s) 839
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 72
XspI CTAG 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.