Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002235

Physical Location & Seq

Genomic Coordinates Reverse (-)

20393170 .. 20395208

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028235

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGAAAGTTAATCATTCAAAACAAAAATCGGAGAAGGTCTTTCTTGACTGGTGGGAGGGAGGATTGTAAAAAGAGAAGGGACAAGGTCTATGTTGGCTGTGGTGCTGGTTTGGGAGGTGACAGGCCTTTGGCAGCTCTCAAGTTGCTGCAGAGTCAAAGAGCTCAACTATATCGTGCTTACAGGCCTTTGGCAGTTCCTGATAAACTCCTGCGGTTGGTTCCAAAGGACTATGGTTGGAAAGGATGGGGTGAAATATATTATGGAGGATTTGAAGTGTTAAACGTGCCAAGATTGCTGAATTTCTGCCATGTAGTTTCTTATATAGTTGGGCTTGATAGCCTGAAGGCAACTGGTCTTAGTGACGGTGCTTCATGTCAGATGGTTAGCGATATTAGGTTACGCATGGATGGGTTATTCAAGGTAGAGGAGCATGCTGTCCAATTTATTACAGGTTTTACTGCTTTATATACAAGTGGACCAGCTGGTGGTGGTGGTATCAGAATTCTTACTAAAGCCAATTCTTCAATTAAACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AtuA

Protein Analysis

180

Amino Acids

19.74

Weight (kDa)

9.9

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01770
fragaria_vesca	FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830
malus_domestica	MD01G1054400.v1.1 MD10G1234500.v1.1
prunus_persica	Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1
pyrus_communis	pycom01g07960 pycom06g04950 pycom07g13860 pycom07g13870
rosa_chinensis	RchiOBHm_Chr1g0354021 RchiOBHm_Chr1g0354041
rosa_laevigata	RLG00000028232 RLG00000028235
rosa_multiflora	Rmu_sc0004632.1_g000002 Rmu_sc0004632.1_g000004 Rmu_sc0025756.1_g000001 Rmu_sc0031149.1_g000001 Rmu_sc0031810.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301280 Rroxscaffold_4G00301310 Rroxscaffold_4G00301330
rosa_rugosa	Rorug01G0240300 Rorug01G0240500
rosa_samantha	Rh1AG251600 Rh1BG223200 Rh1BG223400 Rh1CG236000 Rh1DG250100 Rh1DG250300
rosa_wichuraiana	Rw1G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	488
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	301, 504
AcuI	CTGAAG	1 cut(s)	365
AfiI	CCNNNNNNNGG	2 cut(s)	217, 488
AgsI	TTSAA	4 cut(s)	20, 275, 421, 528
AluBI	AGCT	3 cut(s)	137, 164, 485
AluI	AGCT	3 cut(s)	137, 164, 485
Alw21I	GWGCWC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	125, 185
ApeKI	GCWGC	2 cut(s)	134, 148
ApoI	RAATTY	2 cut(s)	301, 504
AspS9I	GGNCC	1 cut(s)	479
AsuHPI	GGTGA	2 cut(s)	131, 263
AvaII	GGWCC	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	135, 146
BccI	CCATC	3 cut(s)	240, 376, 404
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	2 cut(s)	135, 149
BlsI	GCNGC	2 cut(s)	136, 150
Bme18I	GGWCC	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	479
BmiI	GGNNCC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 488
Bse1I	ACTGG	2 cut(s)	55, 358
BseGI	GGATG	2 cut(s)	251, 415
BseLI	CCNNNNNNNGG	2 cut(s)	217, 488
BseNI	ACTGG	2 cut(s)	55, 358
BseRI	GAGGAG	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	135, 146
BshFI	GGCC	2 cut(s)	127, 187
BsiHKAI	GWGCWC	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	2 cut(s)	217, 488
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	127, 187
Bsp1286I	GDGCHC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	2 cut(s)	127, 187
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	55, 358
Bst4CI	ACNGT	2 cut(s)	368, 537
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	251, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNSI	RCATGY	1 cut(s)	437
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	135, 146
BsuRI	GGCC	2 cut(s)	127, 187
BtsCI	GGATG	2 cut(s)	251, 415
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	479
CviAII	CATG	4 cut(s)	311, 375, 406, 434
CviJI	RGCY	9 cut(s)	99, 127, 137, 164, 187, 334, 342, 485, 518
CviKI_1	RGCY	9 cut(s)	99, 127, 137, 164, 187, 334, 342, 485, 518
DdeI	CTNAG	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	164
Eco147I	AGGCCT	2 cut(s)	127, 187
Eco24I	GRGCYC	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	479
Eco53kI	GAGCTC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	365
EcoICRI	GAGCTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	504
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	4 cut(s)	314, 378, 409, 437
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	4 cut(s)	310, 374, 405, 433
Fnu4HI	GCNGC	2 cut(s)	135, 149
FokI	GGATG	2 cut(s)	258, 422
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	135, 149
GluI	GCNGC	2 cut(s)	135, 149
HaeIII	GGCC	2 cut(s)	127, 187
Hin1II	CATG	4 cut(s)	314, 378, 409, 437
HinfI	GANTC	1 cut(s)	154
HphI	GGTGA	2 cut(s)	131, 263
Hpy166II	GTNNAC	1 cut(s)	479
Hpy188I	TCNGA	3 cut(s)	33, 381, 503
Hpy188III	TCNNGA	2 cut(s)	46, 200
Hpy8I	GTNNAC	1 cut(s)	479
HpyAV	CCTTC	3 cut(s)	30, 72, 340
HpyCH4III	ACNGT	2 cut(s)	368, 537
HpyCH4IV	ACGT	1 cut(s)	285
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	1 cut(s)	359
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	314, 378, 409, 437
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	135, 146
MaeII	ACGT	1 cut(s)	285
MaeIII	GTNAC	3 cut(s)	119, 362, 399
MboII	GAAGA	1 cut(s)	516
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	5 cut(s)	301, 443, 504, 520, 528
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	51, 55, 110, 260, 421
MseI	TTAA	3 cut(s)	11, 281, 531
MspA1I	CMGCKG	1 cut(s)	485
MwoI	GCNNNNNNNGC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	314, 378, 409, 437
NlaIV	GGNNCC	1 cut(s)	222
NmuCI	GTSAC	2 cut(s)	119, 362
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PceI	AGGCCT	2 cut(s)	127, 187
PflFI	GACNNNGTC	1 cut(s)	86
PflMI	CCANNNNNTGG	1 cut(s)	488
PkrI	GCNGC	2 cut(s)	136, 150
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	166
PspN4I	GGNNCC	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	479
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	200
PsyI	GACNNNGTC	1 cut(s)	86
PvuII	CAGCTG	1 cut(s)	485
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	3 cut(s)	11, 281, 531
SatI	GCNGC	2 cut(s)	135, 149
Sau96I	GGNCC	1 cut(s)	479
SchI	GAGTC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	166
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	5 cut(s)	301, 443, 504, 520, 528
SseBI	AGGCCT	2 cut(s)	127, 187
SsiI	CCGC	1 cut(s)	214
SstI	GAGCTC	1 cut(s)	166
StuI	AGGCCT	2 cut(s)	127, 187
TaaI	ACNGT	2 cut(s)	368, 537
TaiI	ACGT	1 cut(s)	288
TasI	AATT	5 cut(s)	301, 443, 504, 520, 528
Tru1I	TTAA	3 cut(s)	11, 281, 531
Tru9I	TTAA	3 cut(s)	11, 281, 531
TseFI	GTSAC	2 cut(s)	119, 362
TseI	GCWGC	2 cut(s)	134, 148
Tsp45I	GTSAC	2 cut(s)	119, 362
TspDTI	ATGAA	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	86
Van91I	CCANNNNNTGG	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	479
XapI	RAATTY	2 cut(s)	301, 504
XceI	RCATGY	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.