Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002235

Physical Location & Seq

Genomic Coordinates Forward (+)

34250161 .. 34257142

Gene Structure 6982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2178 bp

ATGGAAGCCCAGAAAAGTGAGACCAGCGGCTCAGCTCAACCTATGAAGCTCTTGTTCGTGGAGATGGGTGTGGGCTACGACCAACATGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCCTGCTTTTCGAAGAGGGGTTCAGGGTAGTGAGGTAAATTCTGGGACGTTGTTTGTAGAAATGGAAATCCATGAAGGAGGTGTAATTCGCAATTGTGTGATCAAGCTGAGGGAGGATTGTAAAAAGAGAAGAGACAAGGTCTATGTTGGCTGTGGTGCTGGTTTTGGAGGTGACAGGCCTTTGGCAGCTCTTAAGTTGCTGCAGAGAGTCAAAGAGCTCAACTATATCGTGCTTGAATGCCTCGCAGAGCGCACCCTTGCTGAACGGTATCAAGTTATGGTTTCGGGTGGTGATGGTTATGATTCAAGGATTTCTGACTGGATGCGATTGCTCCTTCCTTCGGCTGTTGAGAGAGGAACTTGCATAATCACCAACATGGGTGCAATGGATCCACCGGGGGCACAGGAAAAGGTTATAGAAATAGCCAGCAGCTTGGGGCTTAGTGTTTCTGTTGCTGTGGCTCATGAGATTTCTCTCACAAATATAGGTTCAGCCTCTCATGAGAAGTCATTTTTGATGGAAGGTGGTATTAGCACCTATCTGGGAGCGGCTCCGATTGTTGAATGTTTGGAAAAGTATCTGCCAAATGTAATTATAACTTCACGGGTTGCAGATGCTGCCTTATTTTTAGCACCAATGATTTATGAACTTGGTTGGAACTGGGACAACTTGGAGCAGCTAGCACAGGGGTCTCTGGCAGGCCATCTTCTAGAGTGTGGTTGTCAACTCACGGGGGGATACTTCATGCACCCAAGGGACAAGTCTCGAGACATGTCTTCCTCTCAGCTCCTAGACTTGTCACTTCCTTATGCTGAAATTAGCTCTGATGGAAAAGTATGTGTAGCGAAGGCAGAGGGTAGTGGTGGGGTTTTGAACTTCAGTACATGTGCTCAACAACTTCTTTATGAGATCGGGAATCCGGGTGCTTATGTAACTCCTGATGTGATAATTGATATCCGGGATGTTTCATTCTACCCATTATCAAGTTGTAAGGTCCTCTGTACTGGAGCAAAACCATCTGCAGTATCAGTTCCTGATAAACTCCTGCGGTTGGTTCCAAAGGACTATGGTTGGAAAGGATGGGGTGAAATATCTTATGGAGGATTTGAATGTGTTAAACGTGCCAAGATTGCTGAATTTCTGGTGAGATCATGGATGGAAGAAGTAATTCCTGATGTTAGCAGCCATGTGGTTTCTTATATAGTTGGGCTTGATAGCCTGAAGGCAACTGGTCTTAGTGACAGTGCTTCATGTCAGATGGTTAGCGATATTAGGTTACGCATGGATGGGTTATTCAAGCTAAAGGAGCATGCAGTCCAATTTGTTACAGATTTTACTGCTTTATATACAAATGGACCAGCTGGTGGTGGTGGTATTAGCACTGGACACAAGAAAGAGATCATCCTTGAAAAATATTTGGTCAAGCGTGAACACGTATTCTGGCAGACTGCAGTAAAACACACCAGAGTGATGAAATCAAATAAAACAGGAATTAAATTTCAAGATGGGACAAATATTAGTCTTCCTTATGTGTCTGCATTGCCGATTTCAGAAGCAAGTGAAGTCGATTCTTCTATTGGTGTTCCATTTTCTGGCAGAATCTCTCCTGCTCCATCTGGCCAGAAAATTCCACTCTATGATGTAGCACATAGCCGAGCTGGAGACAAAGGAAATGACTTGAATTTTTCTATCATCCCACATTTTCCTCCAGATGTAGAGAGGTTGAAGAGGATCATAACACCGCAGTGGGTAAAGAAAGTAGTGTCAACTCTTTTAAATTCCTCTTCTTTTCCAGATACGGATGCCATCAATGAAAGAGACAAATGGGTCGACGAAAATGTAAAGGTGGAAATTTATGAAGTGAAGGGAATCCGATCTTTGAATGTAGTGGTTAGGGACATTCTTGATGGTGGTGTAAACTGCTCTAGAAGAATTGACCGGCATGGAAAGACCATCTCCGATCTCATACTGTGTCAGCAAGTTGTATTGCCTCCATGGTTGGGTCGTTCAAGAACTCTTATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AtuA

Protein Analysis

725

Amino Acids

79.17

Weight (kDa)

6.43

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lin0512_fam	PF09585	18 - 73	3.2e-14	Conserved hypothetical protein (Lin0512_fam)
AtuA	PF07287	97 - 530	3.1e-98	Acyclic terpene utilisation family protein AtuA
AtuA_ferredoxin	PF23544	593 - 711	6.1e-46	AtuA ferredoxin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01770
fragaria_vesca	FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830
malus_domestica	MD01G1054400.v1.1 MD10G1234500.v1.1
prunus_persica	Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1
pyrus_communis	pycom01g07960 pycom06g04950 pycom07g13860 pycom07g13870
rosa_chinensis	RchiOBHm_Chr1g0354021 RchiOBHm_Chr1g0354041
rosa_laevigata	RLG00000028232 RLG00000028235
rosa_multiflora	Rmu_sc0004632.1_g000002 Rmu_sc0004632.1_g000004 Rmu_sc0025756.1_g000001 Rmu_sc0031149.1_g000001 Rmu_sc0031810.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301280 Rroxscaffold_4G00301310 Rroxscaffold_4G00301330
rosa_rugosa	Rorug01G0240300 Rorug01G0240500
rosa_samantha	Rh1AG251600 Rh1BG223200 Rh1BG223400 Rh1CG236000 Rh1DG250100 Rh1DG250300
rosa_wichuraiana	Rw1G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	746
AasI	GACNNNNNNGTC	1 cut(s)	1976
AccB7I	CCANNNNNTGG	2 cut(s)	1514, 1742
AccBSI	CCGCTC	1 cut(s)	698
AccI	GTMKAC	1 cut(s)	1980
AciI	CCGC	6 cut(s)	27, 105, 115, 698, 1198, 1892
AclWI	GGATC	4 cut(s)	142, 533, 546, 1889
AcoI	YGGCCR	1 cut(s)	1768
AcsI	RAATTY	7 cut(s)	187, 1286, 1646, 1776, 1831, 1927, 2001
AcuI	CTGAAG	2 cut(s)	1012, 1391
AfaI	GTAC	2 cut(s)	1033, 1153
AfiI	CCNNNNNNNGG	5 cut(s)	490, 1201, 1514, 1742, 2150
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	3 cut(s)	921, 1034, 1582
AleI	CACNNNNGTG	2 cut(s)	1616, 1894
Alw21I	GWGCWC	2 cut(s)	369, 1042
Alw26I	GTCTC	7 cut(s)	14, 276, 846, 912, 918, 1806, 1962
AlwI	GGATC	4 cut(s)	142, 533, 546, 1889
AlwNI	CAGNNNCTG	2 cut(s)	767, 1184
Ama87I	CYCGRG	1 cut(s)	915
AoxI	GGCC	3 cut(s)	326, 850, 1768
ApeKI	GCWGC	7 cut(s)	107, 335, 349, 579, 767, 826, 1332
ApoI	RAATTY	7 cut(s)	187, 1286, 1646, 1776, 1831, 1927, 2001
Asp700I	GAANNNNTTC	1 cut(s)	1317
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	1144, 1505
AsuC2I	CCSGG	3 cut(s)	546, 1071, 1109
AsuHPI	GGTGA	5 cut(s)	332, 452, 511, 1247, 1306
AsuII	TTCGAA	1 cut(s)	160
AsuNHI	GCTAGC	1 cut(s)	829
AvaI	CYCGRG	1 cut(s)	915
AvaII	GGWCC	2 cut(s)	1144, 1505
BaeGI	GKGCMC	1 cut(s)	553
BalI	TGGCCA	1 cut(s)	1770
BamHI	GGATCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	2 cut(s)	918, 1664
Bbv12I	GWGCWC	2 cut(s)	369, 1042
BbvCI	CCTCAGC	1 cut(s)	257
BbvI	GCAGC	7 cut(s)	119, 336, 347, 591, 754, 838, 1344
BciVI	GTATCC	1 cut(s)	881
BclI	TGATCA	1 cut(s)	249
BcnI	CCSGG	3 cut(s)	546, 1071, 1109
BcoDI	GTCTC	7 cut(s)	14, 276, 846, 912, 918, 1806, 1962
BfaI	CTAG	4 cut(s)	830, 860, 941, 2076
BfmI	CTRYAG	3 cut(s)	350, 1170, 1599
BfrI	CTTAAG	1 cut(s)	341
BfuI	GTATCC	1 cut(s)	881
BisI	GCNGC	9 cut(s)	28, 108, 336, 350, 580, 699, 768, 827, 1333
BlpI	GCTNAGC	1 cut(s)	31
BlsI	GCNGC	9 cut(s)	29, 109, 337, 351, 581, 700, 769, 828, 1334
Bme1390I	CCNGG	3 cut(s)	546, 1071, 1109
Bme18I	GGWCC	2 cut(s)	1144, 1505
BmeT110I	CYCGRG	1 cut(s)	915
BmgT120I	GGNCC	2 cut(s)	1144, 1505
BmiI	GGNNCC	3 cut(s)	540, 702, 1206
BmrFI	CCNGG	3 cut(s)	546, 1071, 1109
BmrI	ACTGGG	1 cut(s)	820
BmsI	GCATC	4 cut(s)	118, 462, 754, 1942
BmtI	GCTAGC	1 cut(s)	833
BmuI	ACTGGG	1 cut(s)	820
BpiI	GAAGAC	2 cut(s)	918, 1664
BpmI	CTGGAG	3 cut(s)	1176, 1830, 1842
Bpu10I	CCTNAGC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	160
BpuMI	CCSGG	3 cut(s)	546, 1071, 1109
BsaAI	YACGTR	1 cut(s)	1585
BsaI	GGTCTC	2 cut(s)	14, 846
BsaJI	CCNNGG	3 cut(s)	545, 902, 2144
Bsc4I	CCNNNNNNNGG	5 cut(s)	490, 1201, 1514, 1742, 2150
Bse118I	RCCGGY	1 cut(s)	2088
Bse1I	ACTGG	5 cut(s)	473, 815, 1159, 1384, 1537
Bse3DI	GCAATG	3 cut(s)	117, 540, 1688
BseDI	CCNNGG	3 cut(s)	545, 902, 2144
BseGI	GGATG	8 cut(s)	477, 1117, 1235, 1311, 1441, 1551, 1842, 1957
BseLI	CCNNNNNNNGG	5 cut(s)	490, 1201, 1514, 1742, 2150
BseMI	GCAATG	3 cut(s)	117, 540, 1688
BseMII	CTCAG	3 cut(s)	45, 248, 947
BseNI	ACTGG	5 cut(s)	473, 815, 1159, 1384, 1537
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	7 cut(s)	119, 336, 347, 591, 754, 838, 1344
BshFI	GGCC	3 cut(s)	328, 852, 1770
BsiHKAI	GWGCWC	2 cut(s)	369, 1042
BsiHKCI	CYCGRG	1 cut(s)	915
BsiSI	CCGG	4 cut(s)	545, 1070, 1108, 2089
BslFI	GGGAC	5 cut(s)	208, 827, 920, 1672, 2060
BslI	CCNNNNNNNGG	5 cut(s)	490, 1201, 1514, 1742, 2150
BsmAI	GTCTC	7 cut(s)	14, 276, 846, 912, 918, 1806, 1962
BsmFI	GGGAC	5 cut(s)	208, 827, 920, 1672, 2060
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	328, 852, 1770
Bso31I	GGTCTC	2 cut(s)	14, 846
BsoBI	CYCGRG	1 cut(s)	915
Bsp119I	TTCGAA	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	369, 553, 1042
Bsp143I	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
Bsp1720I	GCTNAGC	1 cut(s)	31
Bsp19I	CCATGG	1 cut(s)	2144
BspACI	CCGC	6 cut(s)	27, 105, 115, 698, 1198, 1892
BspANI	GGCC	3 cut(s)	328, 852, 1770
BspCNI	CTCAG	3 cut(s)	44, 249, 946
BspHI	TCATGA	2 cut(s)	613, 649
BspLI	GGNNCC	3 cut(s)	540, 702, 1206
BspMAI	CTGCAG	3 cut(s)	354, 1174, 1603
BspOI	GCTAGC	1 cut(s)	833
BspPI	GGATC	4 cut(s)	142, 533, 546, 1889
BspT104I	TTCGAA	1 cut(s)	160
BspTI	CTTAAG	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	14, 846
BsrBI	CCGCTC	1 cut(s)	698
BsrDI	GCAATG	3 cut(s)	117, 540, 1688
BsrFI	RCCGGY	1 cut(s)	2088
BsrI	ACTGG	5 cut(s)	473, 815, 1159, 1384, 1537
BssAI	RCCGGY	1 cut(s)	2088
BssECI	CCNNGG	3 cut(s)	545, 902, 2144
BssMI	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
BssT1I	CCWWGG	2 cut(s)	902, 2144
Bst4CI	ACNGT	3 cut(s)	417, 1394, 2121
Bst6I	CTCTTC	4 cut(s)	157, 274, 1871, 1939
BstAFI	CTTAAG	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstBAI	YACGTR	1 cut(s)	1585
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	5 cut(s)	117, 577, 831, 850, 1461
BstDEI	CTNAG	5 cut(s)	31, 257, 590, 933, 1385
BstDSI	CCRYGG	1 cut(s)	2144
BstF5I	GGATG	8 cut(s)	477, 1117, 1235, 1311, 1441, 1551, 1842, 1957
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	9 cut(s)	150, 252, 541, 1062, 1301, 1551, 1884, 2027, 2113
BstMAI	GTCTC	7 cut(s)	14, 276, 846, 912, 918, 1806, 1962
BstMBI	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 767, 1280, 1456
BstNSI	RCATGY	3 cut(s)	925, 1038, 1463
BstSCI	CCNGG	3 cut(s)	544, 1069, 1107
BstSFI	CTRYAG	3 cut(s)	350, 1170, 1599
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	7 cut(s)	119, 336, 347, 591, 754, 838, 1344
BstV2I	GAAGAC	2 cut(s)	918, 1664
BstX2I	RGATCY	1 cut(s)	538
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	538
BsuI	GTATCC	1 cut(s)	881
BsuRI	GGCC	3 cut(s)	328, 852, 1770
BtgI	CCRYGG	1 cut(s)	2144
BtsCI	GGATG	8 cut(s)	477, 1117, 1235, 1311, 1441, 1551, 1842, 1957
BtsI	GCAGTG	1 cut(s)	1901
BtsIMutI	CAGTG	3 cut(s)	1399, 1530, 1901
Cac8I	GCNNGC	5 cut(s)	117, 577, 831, 850, 1461
CaiI	CAGNNNCTG	2 cut(s)	767, 1184
CciI	TCATGA	2 cut(s)	613, 649
CfoI	GCGC	1 cut(s)	402
Cfr10I	RCCGGY	1 cut(s)	2088
Cfr13I	GGNCC	2 cut(s)	1144, 1505
Csp6I	GTAC	2 cut(s)	1032, 1152
CviQI	GTAC	2 cut(s)	1032, 1152
DdeI	CTNAG	5 cut(s)	31, 257, 590, 933, 1385
DpnI	GATC	9 cut(s)	149, 251, 540, 1061, 1300, 1550, 1883, 2026, 2112
DpnII	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
DraI	TTTAAA	1 cut(s)	1926
DrdI	GACNNNNNNGTC	1 cut(s)	1976
DseDI	GACNNNNNNGTC	1 cut(s)	1976
EaeI	YGGCCR	1 cut(s)	1768
Eam1104I	CTCTTC	4 cut(s)	157, 274, 1871, 1939
EarI	CTCTTC	4 cut(s)	157, 274, 1871, 1939
Ecl136II	GAGCTC	1 cut(s)	367
Eco130I	CCWWGG	2 cut(s)	902, 2144
Eco147I	AGGCCT	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	2 cut(s)	14, 846
Eco32I	GATATC	1 cut(s)	1105
Eco47I	GGWCC	2 cut(s)	1144, 1505
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	1012, 1391
Eco88I	CYCGRG	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	1144
EcoRV	GATATC	1 cut(s)	1105
EcoT14I	CCWWGG	2 cut(s)	902, 2144
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	902, 2144
FaqI	GGGAC	5 cut(s)	208, 827, 920, 1672, 2060
FauI	CCCGC	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	1980
Fnu4HI	GCNGC	9 cut(s)	28, 108, 336, 350, 580, 699, 768, 827, 1333
FokI	GGATG	8 cut(s)	484, 1124, 1242, 1318, 1448, 1538, 1829, 1964
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	9 cut(s)	28, 108, 336, 350, 580, 699, 768, 827, 1333
FspBI	CTAG	4 cut(s)	830, 860, 941, 2076
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	9 cut(s)	28, 108, 336, 350, 580, 699, 768, 827, 1333
GsuI	CTGGAG	3 cut(s)	1176, 1830, 1842
HaeIII	GGCC	3 cut(s)	328, 852, 1770
HapII	CCGG	4 cut(s)	545, 1070, 1108, 2089
HhaI	GCGC	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	3 cut(s)	875, 1917, 1981
HindII	GTYRAC	3 cut(s)	875, 1917, 1981
HinfI	GANTC	6 cut(s)	357, 452, 1066, 1718, 1749, 2019
HpaII	CCGG	4 cut(s)	545, 1070, 1108, 2089
HphI	GGTGA	5 cut(s)	332, 452, 511, 1247, 1306
Hpy166II	GTNNAC	5 cut(s)	875, 1580, 1917, 1981, 2068
Hpy188I	TCNGA	7 cut(s)	466, 705, 976, 1407, 1702, 2024, 2110
Hpy8I	GTNNAC	5 cut(s)	875, 1580, 1917, 1981, 2068
Hpy99I	CGWCG	1 cut(s)	1985
HpyAV	CCTTC	7 cut(s)	218, 494, 498, 665, 991, 1366, 2008
HpyCH4III	ACNGT	3 cut(s)	417, 1394, 2121
HpyCH4IV	ACGT	4 cut(s)	101, 197, 1270, 1584
HpyCH4V	TGCA	9 cut(s)	352, 513, 533, 761, 898, 1172, 1463, 1601, 1688
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 767, 1280, 1456
HpyF3I	CTNAG	5 cut(s)	31, 257, 590, 933, 1385
HpySE526I	ACGT	4 cut(s)	101, 197, 1270, 1584
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
LmnI	GCTCC	8 cut(s)	486, 695, 706, 823, 942, 1157, 1456, 1765
Lsp1109I	GCAGC	7 cut(s)	119, 336, 347, 591, 754, 838, 1344
LweI	GCATC	4 cut(s)	118, 462, 754, 1942
MaeI	CTAG	4 cut(s)	830, 860, 941, 2076
MaeII	ACGT	4 cut(s)	101, 197, 1270, 1584
MaeIII	GTNAC	7 cut(s)	97, 320, 948, 1081, 1388, 1425, 1474
MalI	GATC	9 cut(s)	149, 251, 540, 1061, 1300, 1550, 1883, 2026, 2112
MbiI	CCGCTC	1 cut(s)	698
MboI	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
MfeI	CAATTG	1 cut(s)	241
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	3 cut(s)	369, 553, 1042
MlsI	TGGCCA	1 cut(s)	1770
MluNI	TGGCCA	1 cut(s)	1770
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	2 cut(s)	785, 1202
Mox20I	TGGCCA	1 cut(s)	1770
MroXI	GAANNNNTTC	1 cut(s)	1317
MscI	TGGCCA	1 cut(s)	1770
MseI	TTAA	4 cut(s)	342, 1266, 1644, 1925
MslI	CAYNNNNRTG	3 cut(s)	524, 1616, 1894
Msp20I	TGGCCA	1 cut(s)	1770
MspA1I	CMGCKG	2 cut(s)	27, 1511
MspCI	CTTAAG	1 cut(s)	341
MspI	CCGG	4 cut(s)	545, 1070, 1108, 2089
MspR9I	CCNGG	3 cut(s)	546, 1071, 1109
MunI	CAATTG	1 cut(s)	241
Mva1269I	GAATGC	1 cut(s)	392
MwoI	GCNNNNNNNGC	4 cut(s)	116, 767, 1280, 1456
NciI	CCSGG	3 cut(s)	546, 1071, 1109
NcoI	CCATGG	1 cut(s)	2144
NdeII	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
NheI	GCTAGC	1 cut(s)	829
NlaIV	GGNNCC	3 cut(s)	540, 702, 1206
NmeAIII	GCCGAG	1 cut(s)	1829
NmuCI	GTSAC	3 cut(s)	320, 948, 1388
NspI	RCATGY	3 cut(s)	925, 1038, 1463
NspV	TTCGAA	1 cut(s)	160
OliI	CACNNNNGTG	2 cut(s)	1616, 1894
PaeI	GCATGC	1 cut(s)	1463
PaeR7I	CTCGAG	1 cut(s)	915
PagI	TCATGA	2 cut(s)	613, 649
PceI	AGGCCT	1 cut(s)	328
PciI	ACATGT	2 cut(s)	921, 1034
PctI	GAATGC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	1317
PfeI	GAWTC	5 cut(s)	452, 1066, 1718, 1749, 2019
PflFI	GACNNNGTC	1 cut(s)	287
PflMI	CCANNNNNTGG	2 cut(s)	1514, 1742
PfoI	TCCNGGA	1 cut(s)	1107
PkrI	GCNGC	9 cut(s)	29, 109, 337, 351, 581, 700, 769, 828, 1334
PleI	GAGTC	1 cut(s)	365
PpsI	GAGTC	1 cut(s)	365
Ppu21I	YACGTR	1 cut(s)	1585
PpuMI	RGGWCCY	1 cut(s)	1144
PscI	ACATGT	2 cut(s)	921, 1034
PsiI	TTATAA	1 cut(s)	746
Psp124BI	GAGCTC	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	1144
PspN4I	GGNNCC	3 cut(s)	540, 702, 1206
PspPI	GGNCC	2 cut(s)	1144, 1505
PspPPI	RGGWCCY	1 cut(s)	1144
PstI	CTGCAG	3 cut(s)	354, 1174, 1603
PstNI	CAGNNNCTG	2 cut(s)	767, 1184
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	1511
RsaI	GTAC	2 cut(s)	1033, 1153
RsaNI	GTAC	2 cut(s)	1032, 1152
RseI	CAYNNNNRTG	3 cut(s)	524, 1616, 1894
SacI	GAGCTC	1 cut(s)	369
SalI	GTCGAC	1 cut(s)	1979
SaqAI	TTAA	4 cut(s)	342, 1266, 1644, 1925
SatI	GCNGC	9 cut(s)	28, 108, 336, 350, 580, 699, 768, 827, 1333
Sau3AI	GATC	9 cut(s)	147, 249, 538, 1059, 1298, 1548, 1881, 2024, 2110
Sau96I	GGNCC	2 cut(s)	1144, 1505
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	3 cut(s)	546, 1071, 1109
SduI	GDGCHC	3 cut(s)	369, 553, 1042
SfaNI	GCATC	4 cut(s)	118, 462, 754, 1942
SfcI	CTRYAG	3 cut(s)	350, 1170, 1599
Sfr274I	CTCGAG	1 cut(s)	915
SfuI	TTCGAA	1 cut(s)	160
SinI	GGWCC	2 cut(s)	1144, 1505
SlaI	CTCGAG	1 cut(s)	915
SmiMI	CAYNNNNRTG	3 cut(s)	524, 1616, 1894
SmlI	CTYRAG	2 cut(s)	341, 915
SmoI	CTYRAG	2 cut(s)	341, 915
SphI	GCATGC	1 cut(s)	1463
SseBI	AGGCCT	1 cut(s)	328
SsiI	CCGC	6 cut(s)	27, 105, 115, 698, 1198, 1892
SspI	AATATT	2 cut(s)	1565, 1666
SspMI	CTAG	4 cut(s)	830, 860, 941, 2076
SstI	GAGCTC	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	328
StyD4I	CCNGG	3 cut(s)	544, 1069, 1107
StyI	CCWWGG	2 cut(s)	902, 2144
TaaI	ACNGT	3 cut(s)	417, 1394, 2121
TaiI	ACGT	4 cut(s)	104, 200, 1273, 1587
TaqI	TCGA	5 cut(s)	146, 160, 916, 1716, 1980
TatI	WGTACW	2 cut(s)	1031, 1151
TauI	GCSGC	2 cut(s)	30, 701
TfiI	GAWTC	5 cut(s)	452, 1066, 1718, 1749, 2019
Tru1I	TTAA	4 cut(s)	342, 1266, 1644, 1925
Tru9I	TTAA	4 cut(s)	342, 1266, 1644, 1925
TscAI	CASTG	3 cut(s)	1399, 1537, 1901
TseFI	GTSAC	3 cut(s)	320, 948, 1388
TseI	GCWGC	7 cut(s)	107, 335, 349, 579, 767, 826, 1332
Tsp45I	GTSAC	3 cut(s)	320, 948, 1388
TspDTI	ATGAA	9 cut(s)	59, 237, 810, 883, 1107, 1389, 1637, 1977, 2022
TspGWI	ACGGA	1 cut(s)	1964
TspRI	CASTG	3 cut(s)	1399, 1537, 1901
Tth111I	GACNNNGTC	1 cut(s)	287
Van91I	CCANNNNNTGG	2 cut(s)	1514, 1742
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	1144, 1505
XapI	RAATTY	7 cut(s)	187, 1286, 1646, 1776, 1831, 1927, 2001
XbaI	TCTAGA	2 cut(s)	859, 2075
XceI	RCATGY	3 cut(s)	925, 1038, 1463
XhoI	CTCGAG	1 cut(s)	915
XmiI	GTMKAC	1 cut(s)	1980
XmnI	GAANNNNTTC	1 cut(s)	1317
XspI	CTAG	4 cut(s)	830, 860, 941, 2076

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.