Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002235

Physical Location & Seq

Genomic Coordinates Forward (+)

47180426 .. 47184296

Gene Structure 3871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57961

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAAATCCATGAAGGAGGTGTTATTCGCAATTGTGTGATCAAGCTGAGGGAGGGTTATAAAAAGAGAAGGGACAAGGTCTATGTTGGCTGTGGTGCTGGTTTTGGAGGTTACAGGCCCTTGGCAGCTCTTAAGTTGCTGCAGAGAGTCAAAGAGCTCAACTATATTATGCTTAAATGCCTCACAGAGCACACCCTTGCTGAACGGTATCAAGTTATGGTTTCGGGTGGTGATGGTAATGATTCAAGGATTTCTGACTGGATGCGATTGCTTCTTCCTTTGGCTGTTGAGAGAGGAACTTGCATAATCACCAACATGGGTGCAAGTTCAGCCTCTCATGAGAAGTCATTTTTGATGGAAGGTGGTATTAGCACCTATCTGGGAGCGGCTCCGATTGTTGAATGTTTGATTTATGAACTTGGTTGGAACTGGAACAACTTGGAGCAGCTAGCACAGGGGTCTCTGGCAGGCCATCTTCTAGAGTGTGGTTGTCAACTCATGGGGGGGATACTTCATGCACCCAGGGGACAAGTCTCGAGACATTATCAACAACTTCTTTATGAGATCGGGAATCCGGGTGCTTATGTAACTCCTGATGTGATAATTGATATCCGGGATGTTTCATTCTACCCATTATCAAGTTGTAAGGTCCTGTGTGCTGGAGCAAAACCATCTGCAGTATCAGTTCCTGATAAACTCTTGCTGTTGGACATTGGTTGGAAAGGATGGGGTGAAATATCTTATGGAGGCTTTGAATGTGTTAAACGTGCCAAGATTGCTGAATTTCTGGTGAGATCATGGATGGAAGAAGTAATTCCTGATGTTAGCAGCCATGTAGTTTCTTATATAGTTGGGCTTGATAGCCTGAAGGCAAGTGGTCTTAGTGACACTGCTTCATGTCAGATGGTTAGCGATATTAGGTTACGTATGTATGGGTTATTCAAGCTAAAGGAGCATGCAGTCCAATTTTATTACAGGTTTTACTGCTTTATATACAAATGGACCAGCTGGTGGTGGTGGTATCAGAATTCTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AtuA

Protein Analysis

345

Amino Acids

38.88

Weight (kDa)

8.17

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AtuA	PF07287	27 - 110	1.1e-09	Acyclic terpene utilisation family protein AtuA
AtuA	PF07287	129 - 174	2.9e-12	Acyclic terpene utilisation family protein AtuA
AtuA	PF07287	183 - 327	9.2e-16	Acyclic terpene utilisation family protein AtuA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01770
fragaria_vesca	FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830
malus_domestica	MD01G1054400.v1.1 MD10G1234500.v1.1
prunus_persica	Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1
pyrus_communis	pycom01g07960 pycom06g04950 pycom07g13860 pycom07g13870
rosa_chinensis	RchiOBHm_Chr1g0354021 RchiOBHm_Chr1g0354041
rosa_laevigata	RLG00000028232 RLG00000028235
rosa_multiflora	Rmu_sc0004632.1_g000002 Rmu_sc0004632.1_g000004 Rmu_sc0025756.1_g000001 Rmu_sc0031149.1_g000001 Rmu_sc0031810.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301280 Rroxscaffold_4G00301310 Rroxscaffold_4G00301330
rosa_rugosa	Rorug01G0240300 Rorug01G0240500
rosa_samantha	Rh1AG251600 Rh1BG223200 Rh1BG223400 Rh1CG236000 Rh1DG250100 Rh1DG250300
rosa_wichuraiana	Rw1G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	60
AccB7I	CCANNNNNTGG	1 cut(s)	1011
AccBSI	CCGCTC	1 cut(s)	386
AciI	CCGC	1 cut(s)	386
AcsI	RAATTY	2 cut(s)	782, 1027
AcuI	CTGAAG	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	1011
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	4 cut(s)	246, 401, 755, 943
AjnI	CCWGG	1 cut(s)	521
AluBI	AGCT	6 cut(s)	46, 128, 157, 448, 946, 1008
AluI	AGCT	6 cut(s)	46, 128, 157, 448, 946, 1008
Alw21I	GWGCWC	2 cut(s)	159, 192
Alw26I	GTCTC	3 cut(s)	465, 532, 538
AlwNI	CAGNNNCTG	1 cut(s)	689
Ama87I	CYCGRG	1 cut(s)	535
AoxI	GGCC	2 cut(s)	116, 469
ApeKI	GCWGC	4 cut(s)	125, 139, 445, 828
ApoI	RAATTY	2 cut(s)	782, 1027
Asp700I	GAANNNNTTC	1 cut(s)	813
AspS9I	GGNCC	3 cut(s)	117, 649, 1002
AsuC2I	CCSGG	2 cut(s)	576, 614
AsuHPI	GGTGA	4 cut(s)	242, 301, 743, 802
AsuNHI	GCTAGC	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	535
AvaII	GGWCC	2 cut(s)	649, 1002
BanII	GRGCYC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	159, 192
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	4 cut(s)	126, 137, 457, 840
BccI	CCATC	7 cut(s)	227, 349, 480, 679, 720, 796, 898
BciT130I	CCWGG	1 cut(s)	523
BciVI	GTATCC	1 cut(s)	501
BclI	TGATCA	1 cut(s)	39
BcnI	CCSGG	2 cut(s)	576, 614
BcoDI	GTCTC	3 cut(s)	465, 532, 538
BfaI	CTAG	2 cut(s)	449, 479
BfmI	CTRYAG	2 cut(s)	140, 675
BfrI	CTTAAG	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	5 cut(s)	126, 140, 387, 446, 829
BlsI	GCNGC	5 cut(s)	127, 141, 388, 447, 830
Bme1390I	CCNGG	3 cut(s)	523, 576, 614
Bme18I	GGWCC	2 cut(s)	649, 1002
BmeT110I	CYCGRG	1 cut(s)	535
BmgT120I	GGNCC	3 cut(s)	117, 649, 1002
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	3 cut(s)	523, 576, 614
BmsI	GCATC	1 cut(s)	252
BmtI	GCTAGC	1 cut(s)	452
BpmI	CTGGAG	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	47
BpuMI	CCSGG	2 cut(s)	576, 614
BsaAI	YACGTR	1 cut(s)	926
BsaI	GGTCTC	1 cut(s)	465
BsaJI	CCNNGG	3 cut(s)	120, 521, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	1011
Bse1I	ACTGG	2 cut(s)	263, 434
BseBI	CCWGG	1 cut(s)	523
BseDI	CCNNGG	3 cut(s)	120, 521, 522
BseGI	GGATG	4 cut(s)	267, 622, 731, 807
BseLI	CCNNNNNNNGG	1 cut(s)	1011
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	2 cut(s)	263, 434
BseXI	GCAGC	4 cut(s)	126, 137, 457, 840
BshFI	GGCC	2 cut(s)	118, 471
BsiHKAI	GWGCWC	2 cut(s)	159, 192
BsiHKCI	CYCGRG	1 cut(s)	535
BsiSI	CCGG	2 cut(s)	575, 613
BslFI	GGGAC	2 cut(s)	86, 540
BslI	CCNNNNNNNGG	1 cut(s)	1011
BsmAI	GTCTC	3 cut(s)	465, 532, 538
BsmFI	GGGAC	2 cut(s)	86, 540
BsnI	GGCC	2 cut(s)	118, 471
Bso31I	GGTCTC	1 cut(s)	465
BsoBI	CYCGRG	1 cut(s)	535
Bsp1286I	GDGCHC	2 cut(s)	159, 192
Bsp143I	GATC	3 cut(s)	39, 564, 794
BspACI	CCGC	1 cut(s)	386
BspANI	GGCC	2 cut(s)	118, 471
BspCNI	CTCAG	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	390
BspMAI	CTGCAG	2 cut(s)	144, 679
BspOI	GCTAGC	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	465
BsrBI	CCGCTC	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	263, 434
BssECI	CCNNGG	3 cut(s)	120, 521, 522
BssMI	GATC	3 cut(s)	39, 564, 794
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	523
Bst4CI	ACNGT	1 cut(s)	207
BstAFI	CTTAAG	1 cut(s)	131
BstBAI	YACGTR	1 cut(s)	926
BstC8I	GCNNGC	3 cut(s)	450, 469, 957
BstDEI	CTNAG	2 cut(s)	47, 881
BstF5I	GGATG	4 cut(s)	267, 622, 731, 807
BstKTI	GATC	3 cut(s)	42, 567, 797
BstMAI	GTCTC	3 cut(s)	465, 532, 538
BstMBI	GATC	3 cut(s)	39, 564, 794
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 776, 952
BstNI	CCWGG	1 cut(s)	523
BstNSI	RCATGY	1 cut(s)	959
BstSCI	CCNGG	3 cut(s)	521, 574, 612
BstSFI	CTRYAG	2 cut(s)	140, 675
BstSNI	TACGTA	1 cut(s)	926
BstV1I	GCAGC	4 cut(s)	126, 137, 457, 840
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	2 cut(s)	118, 471
BtsCI	GGATG	4 cut(s)	267, 622, 731, 807
BtsI	GCAGTG	1 cut(s)	888
BtsIMutI	CAGTG	1 cut(s)	888
Cac8I	GCNNGC	3 cut(s)	450, 469, 957
CaiI	CAGNNNCTG	1 cut(s)	689
CciI	TCATGA	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	117, 649, 1002
CviAII	CATG	9 cut(s)	11, 316, 338, 499, 515, 798, 833, 897, 956
DdeI	CTNAG	2 cut(s)	47, 881
DpnI	GATC	3 cut(s)	41, 566, 796
DpnII	GATC	3 cut(s)	39, 564, 794
Ecl136II	GAGCTC	1 cut(s)	157
Eco105I	TACGTA	1 cut(s)	926
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	465
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	2 cut(s)	649, 1002
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	887
Eco88I	CYCGRG	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	157
EcoO109I	RGGNCCY	2 cut(s)	117, 649
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	1 cut(s)	521
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	9 cut(s)	14, 319, 341, 502, 518, 801, 836, 900, 959
FaqI	GGGAC	2 cut(s)	86, 540
FatI	CATG	9 cut(s)	10, 315, 337, 498, 514, 797, 832, 896, 955
FbaI	TGATCA	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	126, 140, 387, 446, 829
FokI	GGATG	4 cut(s)	274, 629, 738, 814
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	5 cut(s)	126, 140, 387, 446, 829
FspBI	CTAG	2 cut(s)	449, 479
GluI	GCNGC	5 cut(s)	126, 140, 387, 446, 829
GsuI	CTGGAG	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	118, 471
HapII	CCGG	2 cut(s)	575, 613
Hin1II	CATG	9 cut(s)	14, 319, 341, 502, 518, 801, 836, 900, 959
HincII	GTYRAC	1 cut(s)	494
HindII	GTYRAC	1 cut(s)	494
HinfI	GANTC	3 cut(s)	147, 242, 571
HpaII	CCGG	2 cut(s)	575, 613
HphI	GGTGA	4 cut(s)	242, 301, 743, 802
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	4 cut(s)	256, 393, 903, 1026
Hpy188III	TCNNGA	8 cut(s)	338, 479, 535, 537, 568, 593, 689, 818
Hpy8I	GTNNAC	1 cut(s)	494
HpyAV	CCTTC	4 cut(s)	8, 63, 353, 862
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	2 cut(s)	766, 925
HpyCH4V	TGCA	6 cut(s)	142, 303, 323, 518, 677, 959
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 776, 952
HpyF3I	CTNAG	2 cut(s)	47, 881
HpySE526I	ACGT	2 cut(s)	766, 925
Hsp92II	CATG	9 cut(s)	14, 319, 341, 502, 518, 801, 836, 900, 959
Ksp22I	TGATCA	1 cut(s)	39
Kzo9I	GATC	3 cut(s)	39, 564, 794
LmnI	GCTCC	5 cut(s)	383, 394, 442, 662, 952
Lsp1109I	GCAGC	4 cut(s)	126, 137, 457, 840
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	2 cut(s)	449, 479
MaeII	ACGT	2 cut(s)	766, 925
MaeIII	GTNAC	4 cut(s)	110, 586, 884, 921
MalI	GATC	3 cut(s)	41, 566, 796
MbiI	CCGCTC	1 cut(s)	386
MboI	GATC	3 cut(s)	39, 564, 794
MboII	GAAGA	3 cut(s)	266, 467, 818
MfeI	CAATTG	1 cut(s)	31
MhlI	GDGCHC	2 cut(s)	159, 192
MluCI	AATT	6 cut(s)	31, 603, 782, 813, 965, 1027
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	3 cut(s)	404, 687, 698
MnlI	CCTC	8 cut(s)	11, 42, 46, 101, 191, 287, 343, 740
MroXI	GAANNNNTTC	1 cut(s)	813
MseI	TTAA	3 cut(s)	132, 174, 762
MslI	CAYNNNNRTG	1 cut(s)	314
MspA1I	CMGCKG	1 cut(s)	1008
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	2 cut(s)	575, 613
MspR9I	CCNGG	3 cut(s)	523, 576, 614
MunI	CAATTG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	523
MwoI	GCNNNNNNNGC	3 cut(s)	329, 776, 952
NciI	CCSGG	2 cut(s)	576, 614
NdeII	GATC	3 cut(s)	39, 564, 794
NheI	GCTAGC	1 cut(s)	448
NlaIII	CATG	9 cut(s)	14, 319, 341, 502, 518, 801, 836, 900, 959
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	1 cut(s)	884
NspI	RCATGY	1 cut(s)	959
PaeI	GCATGC	1 cut(s)	959
PaeR7I	CTCGAG	1 cut(s)	535
PagI	TCATGA	1 cut(s)	337
PasI	CCCWGGG	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	813
PfeI	GAWTC	2 cut(s)	242, 571
PflFI	GACNNNGTC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	1011
PfoI	TCCNGGA	1 cut(s)	612
PkrI	GCNGC	5 cut(s)	127, 141, 388, 447, 830
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	926
PpuMI	RGGWCCY	1 cut(s)	649
PsiI	TTATAA	1 cut(s)	60
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	1 cut(s)	649
Psp6I	CCWGG	1 cut(s)	521
PspGI	CCWGG	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	3 cut(s)	117, 649, 1002
PspPPI	RGGWCCY	1 cut(s)	649
PstI	CTGCAG	2 cut(s)	144, 679
PstNI	CAGNNNCTG	1 cut(s)	689
PsyI	GACNNNGTC	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	1008
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	132, 174, 762
SatI	GCNGC	5 cut(s)	126, 140, 387, 446, 829
Sau3AI	GATC	3 cut(s)	39, 564, 794
Sau96I	GGNCC	3 cut(s)	117, 649, 1002
SchI	GAGTC	1 cut(s)	156
ScrFI	CCNGG	3 cut(s)	523, 576, 614
SduI	GDGCHC	2 cut(s)	159, 192
SfaNI	GCATC	1 cut(s)	252
SfcI	CTRYAG	2 cut(s)	140, 675
Sfr274I	CTCGAG	1 cut(s)	535
SinI	GGWCC	2 cut(s)	649, 1002
SlaI	CTCGAG	1 cut(s)	535
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	131, 535
SmoI	CTYRAG	2 cut(s)	131, 535
SnaBI	TACGTA	1 cut(s)	926
SphI	GCATGC	1 cut(s)	959
Sse9I	AATT	6 cut(s)	31, 603, 782, 813, 965, 1027
SsiI	CCGC	1 cut(s)	386
SspMI	CTAG	2 cut(s)	449, 479
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	3 cut(s)	521, 574, 612
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	2 cut(s)	769, 928
TaqI	TCGA	1 cut(s)	536
TasI	AATT	6 cut(s)	31, 603, 782, 813, 965, 1027
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	242, 571
Tru1I	TTAA	3 cut(s)	132, 174, 762
Tru9I	TTAA	3 cut(s)	132, 174, 762
TscAI	CASTG	1 cut(s)	895
TseFI	GTSAC	1 cut(s)	884
TseI	GCWGC	4 cut(s)	125, 139, 445, 828
Tsp45I	GTSAC	1 cut(s)	884
TspDTI	ATGAA	5 cut(s)	27, 429, 503, 612, 885
TspRI	CASTG	1 cut(s)	895
Tth111I	GACNNNGTC	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	1011
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	649, 1002
XapI	RAATTY	2 cut(s)	782, 1027
XbaI	TCTAGA	1 cut(s)	478
XceI	RCATGY	1 cut(s)	959
XhoI	CTCGAG	1 cut(s)	535
XmnI	GAANNNNTTC	1 cut(s)	813
XspI	CTAG	2 cut(s)	449, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.