Rh1BG223200

Acyclic terpene utilisation family protein AtuA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002235
Physical Location & Seq
Forward (+)
34210980 .. 34219276
8297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG223200.1

Sequence Viewer

Length: 1416 bp
ATGTATGTAAATTCTGGGACTTTGTTTGTAGAAATGGAAATCCATGAAGGAGGTGTAATTCGCAATTGTGTGATCAAGCTGAGGGAGGATTGTAAAAAGAGAAGGGACAAGGTCTATGTTGACTGTGGTGCTGGTTTTGGAGGTGACAGGCCTTTGGCAGCTCTTAAGTTGCTGCAGAGAGTCAAAAAGCTCAACTATATCGTGCTTGAATGCCTCACAGAGCGCACCCTTGCTGAACGGTATCAAGTTATGGTTTCGGGTGGTGATGGTTATGATTCAAGGATTTCTGACTGGATGCGATTGCTCCTTCCTTTGGCTGTTGAGAGAGGAACTTGCATAATCACCAACATGGGTGCAATGGATCCACCGGGGGCACAGGAAAAGGTTATAGAAATAGCCTGCAGCTTGGGGCTTAGTGTTTCTGTTGCTGTGGCTCATGAGATTTCTCTCACAAATATAGGTTCAGCCTCTCATGAGAAGTCATTTTTGGTGGAAGGTGGTATTAGCACCTATCTGGGAGCGGCTCCGATTGTTGAATGTTTGGAAAAGTATCAGCCAAATGTAATTATAACTTCACGGGTTGCAGATGCTGCCTTATTTTTAGCACCAATGATTTATGAACTTGGTTGGAACTGGGACAACTTGGAGCAGCTAGCACAGGGGTCTCTGGCAGGCCATCTTCTAGAGTGTGGTTGTCAACTCACGGGGGGATACTTCATGCACCCAGGGGACAAGTCTCGAGACATGTCTTCCTCTCAGCTCCTTGACTTGTCACTTCCTTATGCTGAAATTAGCTCTGATGGAAAAGTATGTGTAGCGAAGGCAGAGGGTAGTGGTGGGGTTTTGAACTTCAGTACATGTGCTCAACAACTTCTTTATGAGATCGGGAATCCGGGTGCTTATGTAACTCCTGATGTGATAATTGATTTCCGGGATGTTTCATTCTACCCATTATCAAGTTGTAAGGTCCTCTGTGCTGGAGCAAAACCATCTGCAGTATCAGTTCCTGATAAACTCCTGCGGTTGGTTCCAAAGGACTCTGGTTGGAAAGGATGGGGCGAAATATCTTATGGAGGATTTGAATGTGTTAAACGTGCCAAGATTGCTGAATTTCTGGTGAGATCATGGATGGAAGAAGTAATTCCTGATGTTAGCAGCCATGTAGTTTCTTACATAGTTGGGCTTGATAGCCTGAAGGCAACTGGTCGTAGTGACACTGCTTCATGTCAGATGGTTAGCGATATTAGGTTACGCATGGATGGGTTATTCAAGCTAAAGGAGCATGCAGTCCAATTTATTACAGGTTTTACTGCTTTATATACAAATGGACCAGCTGGTGGTGGTGGTATCAGAATTTACTTTTACTATATACTAAAGGAGAGATACTGTTCATGGGCACTGTTCCTAAGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AtuA

Protein Analysis

471

Amino Acids

51.48

Weight (kDa)

5.9

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AtuA PF07287 39 - 449 2.4e-95 Acyclic terpene utilisation family protein AtuA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AccB7I CCANNNNNTGG 1 cut(s) 1337
AccBSI CCGCTC 1 cut(s) 521
AciI CCGC 2 cut(s) 521, 1021
AclWI GGATC 2 cut(s) 356, 369
AcsI RAATTY 3 cut(s) 10, 1109, 1353
AcuI CTGAAG 2 cut(s) 835, 1214
AfaI GTAC 1 cut(s) 856
AfiI CCNNNNNNNGG 3 cut(s) 313, 1024, 1337
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 2 cut(s) 744, 857
AgsI TTSAA 6 cut(s) 209, 279, 536, 847, 1082, 1270
AjnI CCWGG 1 cut(s) 724
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 9 cut(s) 79, 161, 190, 405, 652, 760, 795, 1273, 1334
AluI AGCT 9 cut(s) 79, 161, 190, 405, 652, 760, 795, 1273, 1334
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 3 cut(s) 669, 735, 741
AlwI GGATC 2 cut(s) 356, 369
AlwNI CAGNNNCTG 2 cut(s) 590, 1007
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 3 cut(s) 149, 673, 1410
ApeKI GCWGC 6 cut(s) 158, 172, 402, 590, 649, 1155
ApoI RAATTY 3 cut(s) 10, 1109, 1353
Asp700I GAANNNNTTC 1 cut(s) 1140
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 3 cut(s) 967, 1328, 1410
AsuC2I CCSGG 3 cut(s) 369, 894, 932
AsuHPI GGTGA 4 cut(s) 155, 275, 334, 1129
AsuNHI GCTAGC 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 738
AvaII GGWCC 2 cut(s) 967, 1328
AxyI CCTNAGG 1 cut(s) 1406
BaeGI GKGCMC 2 cut(s) 376, 1399
BamHI GGATCC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 1 cut(s) 865
BbvCI CCTCAGC 1 cut(s) 80
BbvI GCAGC 6 cut(s) 159, 170, 414, 577, 661, 1167
BccI CCATC 8 cut(s) 260, 684, 794, 997, 1047, 1123, 1225, 1253
BciT130I CCWGG 1 cut(s) 726
BciVI GTATCC 1 cut(s) 704
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 3 cut(s) 369, 894, 932
BcoDI GTCTC 3 cut(s) 669, 735, 741
BfaI CTAG 2 cut(s) 653, 683
BfmI CTRYAG 3 cut(s) 173, 400, 993
BfrI CTTAAG 1 cut(s) 164
BfuI GTATCC 1 cut(s) 704
BisI GCNGC 7 cut(s) 159, 173, 403, 522, 591, 650, 1156
BlsI GCNGC 7 cut(s) 160, 174, 404, 523, 592, 651, 1157
Bme1390I CCNGG 4 cut(s) 369, 726, 894, 932
Bme18I GGWCC 2 cut(s) 967, 1328
BmeT110I CYCGRG 1 cut(s) 738
BmgT120I GGNCC 3 cut(s) 967, 1328, 1410
BmiI GGNNCC 3 cut(s) 363, 525, 1029
BmrFI CCNGG 4 cut(s) 369, 726, 894, 932
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 2 cut(s) 285, 577
BmtI GCTAGC 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 1 cut(s) 999
Bpu10I CCTNAGC 1 cut(s) 80
BpuMI CCSGG 3 cut(s) 369, 894, 932
BsaI GGTCTC 1 cut(s) 669
BsaJI CCNNGG 3 cut(s) 368, 724, 725
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 1024, 1337
Bse1I ACTGG 3 cut(s) 296, 638, 1207
Bse21I CCTNAGG 1 cut(s) 1406
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 3 cut(s) 368, 724, 725
BseGI GGATG 5 cut(s) 300, 940, 1058, 1134, 1264
BseLI CCNNNNNNNGG 3 cut(s) 313, 1024, 1337
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 2 cut(s) 71, 770
BseNI ACTGG 3 cut(s) 296, 638, 1207
BseSI GKGCMC 2 cut(s) 376, 1399
BseXI GCAGC 6 cut(s) 159, 170, 414, 577, 661, 1167
BshFI GGCC 3 cut(s) 151, 675, 1412
BsiHKAI GWGCWC 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 3 cut(s) 368, 893, 931
BslFI GGGAC 4 cut(s) 31, 119, 650, 743
BslI CCNNNNNNNGG 3 cut(s) 313, 1024, 1337
BsmAI GTCTC 3 cut(s) 669, 735, 741
BsmFI GGGAC 4 cut(s) 31, 119, 650, 743
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 3 cut(s) 151, 675, 1412
Bso31I GGTCTC 1 cut(s) 669
BsoBI CYCGRG 1 cut(s) 738
Bsp1286I GDGCHC 3 cut(s) 376, 865, 1399
Bsp143I GATC 4 cut(s) 72, 361, 882, 1121
BspACI CCGC 2 cut(s) 521, 1021
BspANI GGCC 3 cut(s) 151, 675, 1412
BspCNI CTCAG 2 cut(s) 72, 769
BspHI TCATGA 2 cut(s) 436, 472
BspLI GGNNCC 3 cut(s) 363, 525, 1029
BspMAI CTGCAG 3 cut(s) 177, 404, 997
BspOI GCTAGC 1 cut(s) 656
BspPI GGATC 2 cut(s) 356, 369
BspTI CTTAAG 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 669
BsrBI CCGCTC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 3 cut(s) 296, 638, 1207
BssECI CCNNGG 3 cut(s) 368, 724, 725
BssMI GATC 4 cut(s) 72, 361, 882, 1121
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 4 cut(s) 125, 240, 1388, 1401
BstAFI CTTAAG 1 cut(s) 164
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 4 cut(s) 400, 654, 673, 1284
BstDEI CTNAG 4 cut(s) 80, 413, 756, 1406
BstF5I GGATG 5 cut(s) 300, 940, 1058, 1134, 1264
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 4 cut(s) 75, 364, 885, 1124
BstMAI GTCTC 3 cut(s) 669, 735, 741
BstMBI GATC 4 cut(s) 72, 361, 882, 1121
BstMWI GCNNNNNNNGC 3 cut(s) 590, 1103, 1279
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 3 cut(s) 748, 861, 1286
BstSCI CCNGG 4 cut(s) 367, 724, 892, 930
BstSFI CTRYAG 3 cut(s) 173, 400, 993
BstSLI GKGCMC 2 cut(s) 376, 1399
BstV1I GCAGC 6 cut(s) 159, 170, 414, 577, 661, 1167
BstV2I GAAGAC 1 cut(s) 741
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
Bsu36I CCTNAGG 1 cut(s) 1406
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 3 cut(s) 151, 675, 1412
BtsCI GGATG 5 cut(s) 300, 940, 1058, 1134, 1264
BtsI GCAGTG 1 cut(s) 1215
BtsIMutI CAGTG 2 cut(s) 1215, 1397
Cac8I GCNNGC 4 cut(s) 400, 654, 673, 1284
CaiI CAGNNNCTG 2 cut(s) 590, 1007
CciI TCATGA 2 cut(s) 436, 472
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 967, 1328, 1410
Csp6I GTAC 1 cut(s) 855
CviQI GTAC 1 cut(s) 855
DdeI CTNAG 4 cut(s) 80, 413, 756, 1406
DpnI GATC 4 cut(s) 74, 363, 884, 1123
DpnII GATC 4 cut(s) 72, 361, 882, 1121
Eco147I AGGCCT 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 669
Eco47I GGWCC 2 cut(s) 967, 1328
Eco57I CTGAAG 2 cut(s) 835, 1214
Eco81I CCTNAGG 1 cut(s) 1406
Eco88I CYCGRG 1 cut(s) 738
EcoO109I RGGNCCY 2 cut(s) 967, 1410
EcoRII CCWGG 1 cut(s) 724
FaqI GGGAC 4 cut(s) 31, 119, 650, 743
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 7 cut(s) 159, 173, 403, 522, 591, 650, 1156
FokI GGATG 5 cut(s) 307, 947, 1065, 1141, 1271
Fsp4HI GCNGC 7 cut(s) 159, 173, 403, 522, 591, 650, 1156
FspBI CTAG 2 cut(s) 653, 683
GlaI GCGC 1 cut(s) 224
GluI GCNGC 7 cut(s) 159, 173, 403, 522, 591, 650, 1156
GsuI CTGGAG 1 cut(s) 999
HaeIII GGCC 3 cut(s) 151, 675, 1412
HapII CCGG 3 cut(s) 368, 893, 931
HhaI GCGC 1 cut(s) 225
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 2 cut(s) 121, 698
HindII GTYRAC 2 cut(s) 121, 698
HinfI GANTC 4 cut(s) 180, 275, 889, 1037
HpaII CCGG 3 cut(s) 368, 893, 931
HphI GGTGA 4 cut(s) 155, 275, 334, 1129
Hpy166II GTNNAC 2 cut(s) 121, 698
Hpy188I TCNGA 5 cut(s) 289, 528, 799, 1230, 1352
Hpy188III TCNNGA 9 cut(s) 437, 473, 683, 738, 740, 886, 911, 1007, 1145
Hpy8I GTNNAC 2 cut(s) 121, 698
HpyAV CCTTC 6 cut(s) 41, 96, 317, 488, 814, 1189
HpyCH4III ACNGT 4 cut(s) 125, 240, 1388, 1401
HpyCH4IV ACGT 1 cut(s) 1093
HpyCH4V TGCA 8 cut(s) 175, 336, 356, 402, 584, 721, 995, 1286
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 1103, 1279
HpyF3I CTNAG 4 cut(s) 80, 413, 756, 1406
HpySE526I ACGT 1 cut(s) 1093
HspAI GCGC 1 cut(s) 223
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 4 cut(s) 72, 361, 882, 1121
LmnI GCTCC 7 cut(s) 309, 518, 529, 646, 765, 980, 1279
Lsp1109I GCAGC 6 cut(s) 159, 170, 414, 577, 661, 1167
LweI GCATC 2 cut(s) 285, 577
MaeI CTAG 2 cut(s) 653, 683
MaeII ACGT 1 cut(s) 1093
MaeIII GTNAC 5 cut(s) 143, 771, 904, 1211, 1248
MalI GATC 4 cut(s) 74, 363, 884, 1123
MbiI CCGCTC 1 cut(s) 521
MboI GATC 4 cut(s) 72, 361, 882, 1121
MboII GAAGA 3 cut(s) 671, 741, 1145
MfeI CAATTG 1 cut(s) 64
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 3 cut(s) 376, 865, 1399
MlyI GAGTC 2 cut(s) 189, 1031
MmeI TCCRAC 2 cut(s) 608, 1025
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 2 cut(s) 165, 1089
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 1334
MspCI CTTAAG 1 cut(s) 164
MspI CCGG 3 cut(s) 368, 893, 931
MspR9I CCNGG 4 cut(s) 369, 726, 894, 932
MunI CAATTG 1 cut(s) 64
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 726
MwoI GCNNNNNNNGC 3 cut(s) 590, 1103, 1279
NciI CCSGG 3 cut(s) 369, 894, 932
NdeII GATC 4 cut(s) 72, 361, 882, 1121
NheI GCTAGC 1 cut(s) 652
NlaIV GGNNCC 3 cut(s) 363, 525, 1029
NmuCI GTSAC 3 cut(s) 143, 771, 1211
NspI RCATGY 3 cut(s) 748, 861, 1286
PaeI GCATGC 1 cut(s) 1286
PaeR7I CTCGAG 1 cut(s) 738
PagI TCATGA 2 cut(s) 436, 472
PasI CCCWGGG 1 cut(s) 725
PceI AGGCCT 1 cut(s) 151
PciI ACATGT 2 cut(s) 744, 857
PctI GAATGC 1 cut(s) 215
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 2 cut(s) 275, 889
PflFI GACNNNGTC 1 cut(s) 110
PflMI CCANNNNNTGG 1 cut(s) 1337
PfoI TCCNGGA 1 cut(s) 930
PkrI GCNGC 7 cut(s) 160, 174, 404, 523, 592, 651, 1157
PleI GAGTC 2 cut(s) 188, 1031
PpsI GAGTC 2 cut(s) 188, 1031
PpuMI RGGWCCY 1 cut(s) 967
PscI ACATGT 2 cut(s) 744, 857
PsiI TTATAA 1 cut(s) 569
Psp5II RGGWCCY 1 cut(s) 967
Psp6I CCWGG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 3 cut(s) 363, 525, 1029
PspPI GGNCC 3 cut(s) 967, 1328, 1410
PspPPI RGGWCCY 1 cut(s) 967
PstI CTGCAG 3 cut(s) 177, 404, 997
PstNI CAGNNNCTG 2 cut(s) 590, 1007
PsuI RGATCY 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 1334
RsaI GTAC 1 cut(s) 856
RsaNI GTAC 1 cut(s) 855
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 2 cut(s) 165, 1089
SatI GCNGC 7 cut(s) 159, 173, 403, 522, 591, 650, 1156
Sau3AI GATC 4 cut(s) 72, 361, 882, 1121
Sau96I GGNCC 3 cut(s) 967, 1328, 1410
SchI GAGTC 2 cut(s) 189, 1031
ScrFI CCNGG 4 cut(s) 369, 726, 894, 932
SduI GDGCHC 3 cut(s) 376, 865, 1399
SfaNI GCATC 2 cut(s) 285, 577
SfcI CTRYAG 3 cut(s) 173, 400, 993
Sfr274I CTCGAG 1 cut(s) 738
SinI GGWCC 2 cut(s) 967, 1328
SlaI CTCGAG 1 cut(s) 738
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 164, 738
SmoI CTYRAG 2 cut(s) 164, 738
SphI GCATGC 1 cut(s) 1286
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 2 cut(s) 521, 1021
SspMI CTAG 2 cut(s) 653, 683
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 4 cut(s) 367, 724, 892, 930
TaaI ACNGT 4 cut(s) 125, 240, 1388, 1401
TaiI ACGT 1 cut(s) 1096
TaqI TCGA 1 cut(s) 739
TatI WGTACW 1 cut(s) 854
TauI GCSGC 1 cut(s) 524
TfiI GAWTC 2 cut(s) 275, 889
Tru1I TTAA 2 cut(s) 165, 1089
Tru9I TTAA 2 cut(s) 165, 1089
TscAI CASTG 2 cut(s) 1222, 1404
TseFI GTSAC 3 cut(s) 143, 771, 1211
TseI GCWGC 6 cut(s) 158, 172, 402, 590, 649, 1155
Tsp45I GTSAC 3 cut(s) 143, 771, 1211
TspDTI ATGAA 6 cut(s) 60, 633, 706, 930, 1212, 1380
TspRI CASTG 2 cut(s) 1222, 1404
Tth111I GACNNNGTC 1 cut(s) 110
Van91I CCANNNNNTGG 1 cut(s) 1337
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 967, 1328
XapI RAATTY 3 cut(s) 10, 1109, 1353
XbaI TCTAGA 1 cut(s) 682
XceI RCATGY 3 cut(s) 748, 861, 1286
XhoI CTCGAG 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 2 cut(s) 653, 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.