Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031149.1

Orthogroup ID

OG0002235

Physical Location & Seq

Genomic Coordinates Forward (+)

189 .. 746

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031149.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgaaatcaaataaaactggaattgaatttcaagatgggacacatattagtcttccttatgtgtctgcgttgccgttttcagaagcaagtgaagtcaattcttctattgatgttccgttttctggaagaatctctcctgctccatctggccagaaaattccactctatgatgtagcacatagccgagctggagacaaaggaaatgacttgaatttttctatcatcccacattttcctccagatgtagagaggttgaagaggatcataacaccgcagtgggtaaagaaagtagtgtcaactcttttaaattcctcttcttttccagatacggatgccatcaatgaaagagacaaatgggtcgacgaaaatgtaaaggtggaaatttatgaagtgaagggaatccgatctttgaatgtagtggttagggacattcttgatgggggtgtaaactgctctagaagaattgaccggcatggaaagaccatctccgatctcatactgtgtcagcaagttgtattgcctccatggttgggtcgttcaagaactcttattgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AtuA

Protein Analysis

185

Amino Acids

20.56

Weight (kDa)

7.79

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01770
fragaria_vesca	FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830
malus_domestica	MD01G1054400.v1.1 MD10G1234500.v1.1
prunus_persica	Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1
pyrus_communis	pycom01g07960 pycom06g04950 pycom07g13860 pycom07g13870
rosa_chinensis	RchiOBHm_Chr1g0354021 RchiOBHm_Chr1g0354041
rosa_laevigata	RLG00000028232 RLG00000028235
rosa_multiflora	Rmu_sc0004632.1_g000002 Rmu_sc0004632.1_g000004 Rmu_sc0025756.1_g000001 Rmu_sc0031149.1_g000001 Rmu_sc0031810.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301280 Rroxscaffold_4G00301310 Rroxscaffold_4G00301330
rosa_rugosa	Rorug01G0240300 Rorug01G0240500
rosa_samantha	Rh1AG251600 Rh1BG223200 Rh1BG223400 Rh1CG236000 Rh1DG250100 Rh1DG250300
rosa_wichuraiana	Rw1G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	356
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	5 cut(s)	26, 156, 211, 307, 381
AfiI	CCNNNNNNNGG	2 cut(s)	122, 530
AgsI	TTSAA	6 cut(s)	26, 32, 211, 256, 412, 540
AleI	CACNNNNGTG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw26I	GTCTC	2 cut(s)	186, 342
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	148
ApoI	RAATTY	5 cut(s)	26, 156, 211, 307, 381
BalI	TGGCCA	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	44
BccI	CCATC	5 cut(s)	29, 151, 344, 431, 491
BceAI	ACGGC	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	186, 342
BfaI	CTAG	1 cut(s)	456
BmsI	GCATC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	2 cut(s)	210, 222
BsaJI	CCNNGG	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 530
Bse118I	RCCGGY	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	2 cut(s)	222, 337
BseLI	CCNNNNNNNGG	2 cut(s)	122, 530
BseNI	ACTGG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	150
BsiSI	CCGG	1 cut(s)	469
BslFI	GGGAC	2 cut(s)	52, 440
BslI	CCNNNNNNNGG	2 cut(s)	122, 530
BsmAI	GTCTC	2 cut(s)	186, 342
BsmFI	GGGAC	2 cut(s)	52, 440
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	3 cut(s)	261, 404, 490
Bsp19I	CCATGG	1 cut(s)	524
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	1 cut(s)	150
BspPI	GGATC	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	468
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	3 cut(s)	261, 404, 490
BssT1I	CCWWGG	1 cut(s)	524
Bst4CI	ACNGT	1 cut(s)	501
Bst6I	CTCTTC	2 cut(s)	251, 319
BstDSI	CCRYGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	222, 337
BstKTI	GATC	3 cut(s)	264, 407, 493
BstMAI	GTCTC	2 cut(s)	186, 342
BstMBI	GATC	3 cut(s)	261, 404, 490
BstV2I	GAAGAC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	524
BtsCI	GGATG	2 cut(s)	222, 337
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	468
CviAII	CATG	2 cut(s)	473, 525
CviJI	RGCY	3 cut(s)	150, 183, 188
CviKI_1	RGCY	3 cut(s)	150, 183, 188
DpnI	GATC	3 cut(s)	263, 406, 492
DpnII	GATC	3 cut(s)	261, 404, 490
DraI	TTTAAA	1 cut(s)	306
DrdI	GACNNNNNNGTC	1 cut(s)	356
DseDI	GACNNNNNNGTC	1 cut(s)	356
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	2 cut(s)	251, 319
EarI	CTCTTC	2 cut(s)	251, 319
Eco130I	CCWWGG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	524
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	2 cut(s)	476, 528
FaiI	YATR	9 cut(s)	45, 60, 168, 180, 266, 387, 474, 497, 526
FaqI	GGGAC	2 cut(s)	52, 440
FatI	CATG	2 cut(s)	472, 524
FblI	GTMKAC	1 cut(s)	360
FokI	GGATG	2 cut(s)	209, 344
FspBI	CTAG	1 cut(s)	456
GsuI	CTGGAG	2 cut(s)	210, 222
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	469
Hin1II	CATG	2 cut(s)	476, 528
HincII	GTYRAC	2 cut(s)	297, 361
HindII	GTYRAC	2 cut(s)	297, 361
HinfI	GANTC	2 cut(s)	129, 399
HpaII	CCGG	1 cut(s)	469
Hpy166II	GTNNAC	3 cut(s)	297, 361, 448
Hpy188I	TCNGA	3 cut(s)	82, 404, 490
Hpy188III	TCNNGA	7 cut(s)	32, 123, 239, 323, 434, 456, 540
Hpy8I	GTNNAC	3 cut(s)	297, 361, 448
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	476, 528
Kzo9I	GATC	3 cut(s)	261, 404, 490
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	9 cut(s)	3, 108, 132, 150, 164, 174, 252, 336, 482
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	456
MalI	GATC	3 cut(s)	263, 406, 492
MboI	GATC	3 cut(s)	261, 404, 490
MboII	GAAGA	6 cut(s)	44, 93, 138, 268, 306, 471
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	8 cut(s)	21, 26, 97, 156, 211, 307, 381, 462
MluNI	TGGCCA	1 cut(s)	150
MnlI	CCTC	5 cut(s)	243, 246, 252, 322, 531
Mox20I	TGGCCA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	274
Msp20I	TGGCCA	1 cut(s)	150
MspI	CCGG	1 cut(s)	469
NcoI	CCATGG	1 cut(s)	524
NdeII	GATC	3 cut(s)	261, 404, 490
NlaIII	CATG	2 cut(s)	476, 528
NmeAIII	GCCGAG	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	274
PfeI	GAWTC	2 cut(s)	129, 399
RseI	CAYNNNNRTG	1 cut(s)	274
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	305
Sau3AI	GATC	3 cut(s)	261, 404, 490
SetI	ASST	3 cut(s)	190, 254, 378
SfaNI	GCATC	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	274
Sse9I	AATT	8 cut(s)	21, 26, 97, 156, 211, 307, 381, 462
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	360
TasI	AATT	8 cut(s)	21, 26, 97, 156, 211, 307, 381, 462
TfiI	GAWTC	2 cut(s)	129, 399
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	1 cut(s)	281
TspDTI	ATGAA	3 cut(s)	17, 357, 402
TspGWI	ACGGA	2 cut(s)	105, 344
TspRI	CASTG	1 cut(s)	281
XapI	RAATTY	5 cut(s)	26, 156, 211, 307, 381
XbaI	TCTAGA	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.