Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031810.1

Orthogroup ID

OG0002235

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2249

Gene Structure 2249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031810.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atttatgaacttggttggaactgggacaacttggagcagctagcacaggggtctctggcaggccatcttctagagtgtggttgtcaactcacggggggatacttcatgcacccaggggacaagtctcgagacatgtcttcctctcagctcctagacttgtcacttccttatgctgaaattagctctgatggaaaagtatgtgtagcgaaggcagagggtagtggtggggttttgaacttcagtacatgtgctcaacaacttctttatgagatcggaaatccgggtgcttatgtaactcctgatgtgataattgatatccgggatgtttcattctacccattatcaagttgtaaggtcctctgtgctggagcaaaaccatctgcagtatcaattcctgataaactcctgcggttggttccaaaggactatggttggaaaggatggggtgaaatatcttatggaggatatgaatgtgttaaacgtgccaagattgctgaatatctggtgagatcatggatggaagaagtaattcctgatgttagcagccatgtagtttcttatatagttgggcttgatagcctgaagtcaactggtcttagtgacagtgcttcatgtcatatggttagcgatattaggttacgcatggatgggttattcaagctaaaggagcatgcagtccaatttattacagattttactgctttatatacaaatggaccagctggtggtggtggtatcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AtuA

Protein Analysis

247

Amino Acids

26.78

Weight (kDa)

5.22

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002235)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01770
fragaria_vesca	FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830 FvH4_7g13830
malus_domestica	MD01G1054400.v1.1 MD10G1234500.v1.1
prunus_persica	Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1 Prupe.2G164100_v2.0.a1
pyrus_communis	pycom01g07960 pycom06g04950 pycom07g13860 pycom07g13870
rosa_chinensis	RchiOBHm_Chr1g0354021 RchiOBHm_Chr1g0354041
rosa_laevigata	RLG00000028232 RLG00000028235
rosa_multiflora	Rmu_sc0004632.1_g000002 Rmu_sc0004632.1_g000004 Rmu_sc0025756.1_g000001 Rmu_sc0031149.1_g000001 Rmu_sc0031810.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301280 Rroxscaffold_4G00301310 Rroxscaffold_4G00301330
rosa_rugosa	Rorug01G0240300 Rorug01G0240500
rosa_samantha	Rh1AG251600 Rh1BG223200 Rh1BG223400 Rh1CG236000 Rh1DG250100 Rh1DG250300
rosa_wichuraiana	Rw1G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	725
AciI	CCGC	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	223, 602
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	412, 725
AflIII	ACRYGT	2 cut(s)	132, 245
AgsI	TTSAA	2 cut(s)	235, 658
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	5 cut(s)	40, 148, 183, 661, 722
AluI	AGCT	5 cut(s)	40, 148, 183, 661, 722
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	3 cut(s)	57, 123, 129
Ama87I	CYCGRG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	2 cut(s)	37, 543
Asp700I	GAANNNNTTC	1 cut(s)	528
AspS9I	GGNCC	2 cut(s)	355, 716
AsuC2I	CCSGG	2 cut(s)	282, 320
AsuHPI	GGTGA	2 cut(s)	458, 517
AsuNHI	GCTAGC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	2 cut(s)	355, 716
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	253
BbvI	GCAGC	2 cut(s)	49, 555
BccI	CCATC	6 cut(s)	72, 182, 385, 435, 511, 641
BciT130I	CCWGG	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	92
BcnI	CCSGG	2 cut(s)	282, 320
BcoDI	GTCTC	3 cut(s)	57, 123, 129
BfaI	CTAG	3 cut(s)	41, 71, 152
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	92
BisI	GCNGC	2 cut(s)	38, 544
BlsI	GCNGC	2 cut(s)	39, 545
Bme1390I	CCNGG	3 cut(s)	114, 282, 320
Bme18I	GGWCC	2 cut(s)	355, 716
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	355, 716
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	3 cut(s)	114, 282, 320
BmrI	ACTGGG	1 cut(s)	31
BmtI	GCTAGC	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	387
BpuMI	CCSGG	2 cut(s)	282, 320
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	112, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	412, 725
Bse1I	ACTGG	2 cut(s)	26, 595
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	112, 113
BseGI	GGATG	4 cut(s)	328, 446, 522, 652
BseLI	CCNNNNNNNGG	2 cut(s)	412, 725
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	2 cut(s)	26, 595
BseXI	GCAGC	2 cut(s)	49, 555
BshFI	GGCC	1 cut(s)	63
BsiHKAI	GWGCWC	1 cut(s)	253
BsiHKCI	CYCGRG	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	281, 319
BslFI	GGGAC	2 cut(s)	38, 131
BslI	CCNNNNNNNGG	2 cut(s)	412, 725
BsmAI	GTCTC	3 cut(s)	57, 123, 129
BsmFI	GGGAC	2 cut(s)	38, 131
BsnI	GGCC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	57
BsoBI	CYCGRG	1 cut(s)	126
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	270, 509
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	1 cut(s)	385
BspOI	GCTAGC	1 cut(s)	44
BspTNI	GGTCTC	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	26, 595
BssECI	CCNNGG	2 cut(s)	112, 113
BssMI	GATC	2 cut(s)	270, 509
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	605
BstC8I	GCNNGC	3 cut(s)	42, 61, 672
BstDEI	CTNAG	2 cut(s)	144, 596
BstF5I	GGATG	4 cut(s)	328, 446, 522, 652
BstKTI	GATC	2 cut(s)	273, 512
BstMAI	GTCTC	3 cut(s)	57, 123, 129
BstMBI	GATC	2 cut(s)	270, 509
BstMWI	GCNNNNNNNGC	2 cut(s)	491, 667
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	3 cut(s)	136, 249, 674
BstSCI	CCNGG	3 cut(s)	112, 280, 318
BstSFI	CTRYAG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	49, 555
BstV2I	GAAGAC	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	4 cut(s)	328, 446, 522, 652
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	3 cut(s)	42, 61, 672
Cfr13I	GGNCC	2 cut(s)	355, 716
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	8 cut(s)	106, 133, 246, 513, 548, 612, 643, 671
CviJI	RGCY	9 cut(s)	40, 63, 148, 183, 546, 571, 579, 661, 722
CviKI_1	RGCY	9 cut(s)	40, 63, 148, 183, 546, 571, 579, 661, 722
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	144, 596
DpnI	GATC	2 cut(s)	272, 511
DpnII	GATC	2 cut(s)	270, 509
Eco31I	GGTCTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	2 cut(s)	355, 716
Eco57I	CTGAAG	2 cut(s)	223, 602
Eco88I	CYCGRG	1 cut(s)	126
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	316
FaeI	CATG	8 cut(s)	109, 136, 249, 516, 551, 615, 646, 674
FaqI	GGGAC	2 cut(s)	38, 131
FatI	CATG	8 cut(s)	105, 132, 245, 512, 547, 611, 642, 670
FauNDI	CATATG	1 cut(s)	618
Fnu4HI	GCNGC	2 cut(s)	38, 544
FokI	GGATG	4 cut(s)	335, 453, 529, 659
Fsp4HI	GCNGC	2 cut(s)	38, 544
FspBI	CTAG	3 cut(s)	41, 71, 152
GluI	GCNGC	2 cut(s)	38, 544
GsuI	CTGGAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	281, 319
Hin1II	CATG	8 cut(s)	109, 136, 249, 516, 551, 615, 646, 674
HincII	GTYRAC	2 cut(s)	86, 588
HindII	GTYRAC	2 cut(s)	86, 588
HpaII	CCGG	2 cut(s)	281, 319
HphI	GGTGA	2 cut(s)	458, 517
Hpy166II	GTNNAC	2 cut(s)	86, 588
Hpy188I	TCNGA	2 cut(s)	187, 275
Hpy188III	TCNNGA	6 cut(s)	71, 126, 128, 299, 395, 533
Hpy8I	GTNNAC	2 cut(s)	86, 588
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	1 cut(s)	605
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	3 cut(s)	109, 383, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	491, 667
HpyF3I	CTNAG	2 cut(s)	144, 596
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	8 cut(s)	109, 136, 249, 516, 551, 615, 646, 674
Kzo9I	GATC	2 cut(s)	270, 509
LmnI	GCTCC	4 cut(s)	34, 153, 368, 667
Lsp1109I	GCAGC	2 cut(s)	49, 555
MaeI	CTAG	3 cut(s)	41, 71, 152
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	4 cut(s)	159, 292, 599, 636
MalI	GATC	2 cut(s)	272, 511
MboI	GATC	2 cut(s)	270, 509
MboII	GAAGA	3 cut(s)	59, 129, 533
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	5 cut(s)	177, 309, 390, 528, 680
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	4 cut(s)	151, 208, 368, 455
MroXI	GAANNNNTTC	1 cut(s)	528
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	2 cut(s)	281, 319
MspR9I	CCNGG	3 cut(s)	114, 282, 320
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	491, 667
NciI	CCSGG	2 cut(s)	282, 320
NdeI	CATATG	1 cut(s)	618
NdeII	GATC	2 cut(s)	270, 509
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	8 cut(s)	109, 136, 249, 516, 551, 615, 646, 674
NlaIV	GGNNCC	1 cut(s)	417
NmuCI	GTSAC	2 cut(s)	159, 599
NspI	RCATGY	3 cut(s)	136, 249, 674
PaeI	GCATGC	1 cut(s)	674
PaeR7I	CTCGAG	1 cut(s)	126
PasI	CCCWGGG	1 cut(s)	113
PciI	ACATGT	2 cut(s)	132, 245
PdmI	GAANNNNTTC	1 cut(s)	528
PflMI	CCANNNNNTGG	1 cut(s)	725
PfoI	TCCNGGA	1 cut(s)	318
PkrI	GCNGC	2 cut(s)	39, 545
PpuMI	RGGWCCY	1 cut(s)	355
PscI	ACATGT	2 cut(s)	132, 245
Psp5II	RGGWCCY	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	2 cut(s)	355, 716
PspPPI	RGGWCCY	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	385
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	2 cut(s)	38, 544
Sau3AI	GATC	2 cut(s)	270, 509
Sau96I	GGNCC	2 cut(s)	355, 716
ScrFI	CCNGG	3 cut(s)	114, 282, 320
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	9 cut(s)	42, 150, 185, 357, 484, 638, 663, 724, 743
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	126
SinI	GGWCC	2 cut(s)	355, 716
SlaI	CTCGAG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
SphI	GCATGC	1 cut(s)	674
Sse9I	AATT	5 cut(s)	177, 309, 390, 528, 680
SsiI	CCGC	1 cut(s)	409
SspMI	CTAG	3 cut(s)	41, 71, 152
StyD4I	CCNGG	3 cut(s)	112, 280, 318
TaaI	ACNGT	1 cut(s)	605
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	127
TasI	AATT	5 cut(s)	177, 309, 390, 528, 680
TatI	WGTACW	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	2 cut(s)	159, 599
TseI	GCWGC	2 cut(s)	37, 543
Tsp45I	GTSAC	2 cut(s)	159, 599
TspDTI	ATGAA	5 cut(s)	21, 94, 318, 483, 600
TspRI	CASTG	1 cut(s)	610
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	2 cut(s)	355, 716
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	3 cut(s)	136, 249, 674
XhoI	CTCGAG	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	528
XspI	CTAG	3 cut(s)	41, 71, 152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.