Rorug01G0240500

Acyclic terpene utilisation family protein AtuA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000366
Physical Location & Seq
Reverse (-)
34572246 .. 34575415
3170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0240500.1

Sequence Viewer

Length: 876 bp
ATGGAAGCACAGAGCTTGAAAGAGGACAATCCTAAATTGCAGAGCTTGGAAGAAGACCCTAAATCAAAGGGCCTGGAAGAAGAAGATACTAAATTACAGAGCTTGAAAGAAGACGACCATAAATCACAGAGATTGAAAGAAGAGGAATGTAAGTCGCACAGCTCGGAAGAAGACCTTAAGTTAAACAGCTTGGAAGAAGACCCTAAATCGCAGAGCTTGAAAGAAGAAGACCTTAAATTACAGAGCTTGGAAGAGGAAGAGCCTAAATCACAGAGCTTGAAAGAAGAAGGACAACATAGCTTGGGAGACCCTAGATTCAATGAAAATGCATTGCAATTCCTAGATTCAATGGATGGGTATTTAACACTATTGGATTCTTTGTCTTGGACACTTCGGCAGGGATGGCTGCAACTAGCAAGTGCGCGCCATTCAATGGGTGGGTCGCGGGTGAGCAGTGCTGTGTTGGATATGAAGCCCCACTCAGCTGCTACTTTTTTGCAAGTCAGCAAACAATCCAATCCAGGAGCAGGGTTAGGGGAAATTCATCATTTTACATTGCTGAAATGGGCCTCCTCTGATGATGGAAATGGAGCTCCACATAGAGATGCGAGTCCGCAGCTAAGACAAAGAAAGGACAAGGATGGAGATTCAGCTCCGGTTACAGCTGAAGATGATTATCAACATCAACTTCAGAAGGAGCGGTTTAAATCACTTTCGGTGTTTGGCGCTTTGGTTTCCCCCAAGCTACGGGCGGCTCAGCTCTCATTCGAAACTGCACTCGAAGCACTTGTAGAGATTGCTAACATGCGATCGTTGATGCTTTCCAATTTTCATGAAGTCAGAAAAGAAATGGAATCAGCAAATGGCAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AtuA

Protein Analysis

291

Amino Acids

32.64

Weight (kDa)

5.08

Isoelectric Point (pI)

62.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vma22_CCDC115 PF21730 108 - 258 1.9e-09 Vma22/CCDC115
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 700
AccII CGCG 2 cut(s) 424, 445
AciI CCGC 4 cut(s) 445, 614, 700, 752
AcsI RAATTY 1 cut(s) 540
AcuI CTGAAG 2 cut(s) 674, 687
AfiI CCNNNNNNNGG 3 cut(s) 433, 527, 747
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 8 cut(s) 19, 106, 136, 220, 280, 319, 348, 432
AjnI CCWGG 2 cut(s) 72, 520
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 1 cut(s) 300
AoxI GGCC 2 cut(s) 70, 567
ApeKI GCWGC 3 cut(s) 406, 485, 616
ApoI RAATTY 1 cut(s) 540
AspLEI GCGC 3 cut(s) 424, 426, 728
AspS9I GGNCC 2 cut(s) 70, 567
AsuHPI GGTGA 1 cut(s) 460
AsuII TTCGAA 1 cut(s) 768
BanII GRGCYC 1 cut(s) 595
BbsI GAAGAC 5 cut(s) 60, 117, 177, 204, 234
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 3 cut(s) 393, 472, 628
BccI CCATC 4 cut(s) 347, 396, 575, 635
BciT130I CCWGG 2 cut(s) 74, 522
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 3 cut(s) 312, 341, 413
BfoI RGCGCY 1 cut(s) 729
BfrI CTTAAG 1 cut(s) 176
BisI GCNGC 4 cut(s) 407, 486, 617, 753
BlpI GCTNAGC 1 cut(s) 756
BlsI GCNGC 4 cut(s) 408, 487, 618, 754
Bme1390I CCNGG 2 cut(s) 74, 522
BmgT120I GGNCC 2 cut(s) 70, 567
BmrFI CCNGG 2 cut(s) 74, 522
BmsI GCATC 2 cut(s) 595, 807
BpiI GAAGAC 5 cut(s) 60, 117, 177, 204, 234
Bpu1102I GCTNAGC 1 cut(s) 756
Bpu14I TTCGAA 1 cut(s) 768
BsaBI GATNNNNATC 1 cut(s) 675
BsaI GGTCTC 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 3 cut(s) 433, 527, 747
Bse3DI GCAATG 2 cut(s) 329, 554
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 2 cut(s) 74, 522
BseGI GGATG 3 cut(s) 358, 407, 646
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 3 cut(s) 433, 527, 747
BseMI GCAATG 2 cut(s) 329, 554
BseMII CTCAG 2 cut(s) 495, 770
BsePI GCGCGC 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 562
BseXI GCAGC 3 cut(s) 393, 472, 628
BsgI GTGCAG 1 cut(s) 759
Bsh1236I CGCG 2 cut(s) 424, 445
Bsh1285I CGRYCG 1 cut(s) 812
BshFI GGCC 2 cut(s) 72, 569
BsiEI CGRYCG 1 cut(s) 812
BsiHKAI GWGCWC 1 cut(s) 595
BsiSI CCGG 1 cut(s) 656
BslI CCNNNNNNNGG 3 cut(s) 433, 527, 747
BsmAI GTCTC 1 cut(s) 300
BsnI GGCC 2 cut(s) 72, 569
Bso31I GGTCTC 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 768
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 1 cut(s) 809
Bsp1720I GCTNAGC 1 cut(s) 756
BspACI CCGC 4 cut(s) 445, 614, 700, 752
BspANI GGCC 2 cut(s) 72, 569
BspCNI CTCAG 2 cut(s) 494, 769
BspFNI CGCG 2 cut(s) 424, 445
BspHI TCATGA 1 cut(s) 832
BspQI GCTCTTC 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 768
BspTI CTTAAG 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 700
BsrDI GCAATG 2 cut(s) 329, 554
BssHII GCGCGC 1 cut(s) 422
BssMI GATC 1 cut(s) 809
Bst2UI CCWGG 2 cut(s) 74, 522
Bst6I CTCTTC 3 cut(s) 135, 246, 252
BstAFI CTTAAG 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 768
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 3 cut(s) 481, 620, 756
BstF5I GGATG 3 cut(s) 358, 407, 646
BstFNI CGCG 2 cut(s) 424, 445
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 3 cut(s) 424, 426, 728
BstKTI GATC 1 cut(s) 812
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 1 cut(s) 809
BstMCI CGRYCG 1 cut(s) 812
BstMWI GCNNNNNNNGC 2 cut(s) 403, 782
BstNI CCWGG 2 cut(s) 74, 522
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 2 cut(s) 72, 520
BstUI CGCG 2 cut(s) 424, 445
BstV1I GCAGC 3 cut(s) 393, 472, 628
BstV2I GAAGAC 5 cut(s) 60, 117, 177, 204, 234
BsuRI GGCC 2 cut(s) 72, 569
BtsCI GGATG 3 cut(s) 358, 407, 646
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 424
CciI TCATGA 1 cut(s) 832
CfoI GCGC 3 cut(s) 424, 426, 728
Cfr13I GGNCC 2 cut(s) 70, 567
CviAII CATG 2 cut(s) 805, 833
DdeI CTNAG 3 cut(s) 481, 620, 756
DpnI GATC 1 cut(s) 811
DpnII GATC 1 cut(s) 809
DraI TTTAAA 1 cut(s) 706
Eam1104I CTCTTC 3 cut(s) 135, 246, 252
EarI CTCTTC 3 cut(s) 135, 246, 252
Ecl136II GAGCTC 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 595
Eco31I GGTCTC 1 cut(s) 300
Eco53kI GAGCTC 1 cut(s) 593
Eco57I CTGAAG 2 cut(s) 674, 687
EcoICRI GAGCTC 1 cut(s) 593
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 2 cut(s) 72, 520
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 595
FaeI CATG 2 cut(s) 808, 836
FaiI YATR 6 cut(s) 120, 297, 470, 600, 806, 834
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 216, 248
FatI CATG 2 cut(s) 804, 832
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 4 cut(s) 407, 486, 617, 753
FokI GGATG 3 cut(s) 365, 414, 653
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 4 cut(s) 407, 486, 617, 753
FspBI CTAG 3 cut(s) 312, 341, 413
GlaI GCGC 3 cut(s) 423, 425, 727
GluI GCNGC 4 cut(s) 407, 486, 617, 753
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 2 cut(s) 72, 569
HapII CCGG 1 cut(s) 656
HhaI GCGC 3 cut(s) 424, 426, 728
Hin1II CATG 2 cut(s) 808, 836
Hin6I GCGC 3 cut(s) 422, 424, 726
HinP1I GCGC 3 cut(s) 422, 424, 726
HinfI GANTC 6 cut(s) 315, 344, 374, 610, 647, 854
HpaII CCGG 1 cut(s) 656
HphI GGTGA 1 cut(s) 460
Hpy188I TCNGA 4 cut(s) 166, 577, 693, 842
Hpy188III TCNNGA 1 cut(s) 833
HpyAV CCTTC 2 cut(s) 281, 688
HpyCH4V TGCA 6 cut(s) 40, 329, 334, 409, 499, 776
HpyF10VI GCNNNNNNNGC 2 cut(s) 403, 782
HpyF3I CTNAG 3 cut(s) 481, 620, 756
Hsp92II CATG 2 cut(s) 808, 836
HspAI GCGC 3 cut(s) 422, 424, 726
Kzo9I GATC 1 cut(s) 809
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 5 cut(s) 524, 590, 598, 658, 697
LpnPI CCDG 7 cut(s) 59, 86, 383, 507, 513, 534, 669
Lsp1109I GCAGC 3 cut(s) 393, 472, 628
LweI GCATC 2 cut(s) 595, 807
MaeI CTAG 3 cut(s) 312, 341, 413
MaeIII GTNAC 1 cut(s) 658
MalI GATC 1 cut(s) 811
MbiI CCGCTC 1 cut(s) 700
MboI GATC 1 cut(s) 809
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 6 cut(s) 35, 92, 236, 335, 540, 826
MlyI GAGTC 1 cut(s) 619
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 5 cut(s) 16, 136, 247, 580, 583
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 5 cut(s) 177, 182, 234, 362, 705
MslI CAYNNNNRTG 1 cut(s) 603
MspA1I CMGCKG 2 cut(s) 485, 665
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 2 cut(s) 74, 522
MvaI CCWGG 2 cut(s) 74, 522
MvnI CGCG 2 cut(s) 424, 445
MwoI GCNNNNNNNGC 2 cut(s) 403, 782
NdeII GATC 1 cut(s) 809
NlaIII CATG 2 cut(s) 808, 836
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 808
NspV TTCGAA 1 cut(s) 768
PagI TCATGA 1 cut(s) 832
PauI GCGCGC 1 cut(s) 422
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 5 cut(s) 315, 344, 374, 647, 854
PflMI CCANNNNNTGG 1 cut(s) 433
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 4 cut(s) 408, 487, 618, 754
Ple19I CGATCG 1 cut(s) 812
PleI GAGTC 1 cut(s) 618
PpsI GAGTC 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 595
Psp6I CCWGG 2 cut(s) 72, 520
PspGI CCWGG 2 cut(s) 72, 520
PspPI GGNCC 2 cut(s) 70, 567
PteI GCGCGC 1 cut(s) 422
PvuI CGATCG 1 cut(s) 812
PvuII CAGCTG 2 cut(s) 485, 665
RseI CAYNNNNRTG 1 cut(s) 603
SacI GAGCTC 1 cut(s) 595
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 5 cut(s) 177, 182, 234, 362, 705
SatI GCNGC 4 cut(s) 407, 486, 617, 753
Sau3AI GATC 1 cut(s) 809
Sau96I GGNCC 2 cut(s) 70, 567
SchI GAGTC 1 cut(s) 619
ScrFI CCNGG 2 cut(s) 74, 522
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 2 cut(s) 595, 807
SfuI TTCGAA 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 6 cut(s) 35, 92, 236, 335, 540, 826
SsiI CCGC 4 cut(s) 445, 614, 700, 752
SspMI CTAG 3 cut(s) 312, 341, 413
SstI GAGCTC 1 cut(s) 595
StyD4I CCNGG 2 cut(s) 72, 520
TaqI TCGA 2 cut(s) 768, 780
TasI AATT 6 cut(s) 35, 92, 236, 335, 540, 826
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 5 cut(s) 315, 344, 374, 647, 854
Tru1I TTAA 5 cut(s) 177, 182, 234, 362, 705
Tru9I TTAA 5 cut(s) 177, 182, 234, 362, 705
TscAI CASTG 1 cut(s) 460
TseI GCWGC 3 cut(s) 406, 485, 616
TspDTI ATGAA 5 cut(s) 336, 485, 533, 821, 849
TspRI CASTG 1 cut(s) 460
Van91I CCANNNNNTGG 1 cut(s) 433
Vha464I CTTAAG 1 cut(s) 176
XapI RAATTY 1 cut(s) 540
XceI RCATGY 1 cut(s) 808
XcmI CCANNNNNNNNNTGG 1 cut(s) 434
XspI CTAG 3 cut(s) 312, 341, 413
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.