Rmu_ssc0000330.1_g000011

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000330.1
OG0000366
Physical Location & Seq
Forward (+)
42847 .. 43673
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000330.1_g000011.1.cds

Sequence Viewer

Length: 699 bp
atgatgaaaggtgctcattgccctacagctgctgcttttgccctattggcattggcaaccttccaccttgtctctgcctttgatcctagtcctctccaagatttctgtgtagcacttaacaccaccaacactgatatttctgctgtgtttgtgaatgggagattctgcaaggacccaaagaaggtaacaccagaggatttcttcttttccgggctccggatgcgtggaaacacatcaaatccgcttggttccatcgtcacccaggcgaatgtgcagcaaatagcaggactgaacactcttggggtatccctcgctcgcatagactatgcacttggtggactaaaccctcctcacatccaccctcgggccacggaagtccttatggtcatggaaggcactctctacgttggctttgtcacatccaacgataacggcaaccgtctcttcagcaaagtgttgtacaagggagatgtatttgtcttcccatttgctcaaattcacttccagcttaacatcggaaaggtcaacgccgtagccatttccagttttagcagccagtttcctggtgtcaccaccatagccaatgcagtgttcggctccaacccttcaatcaaccctgatgttctcaccaccgccttccaagttgacaaaaatgtcgttcagtatctccagaaccagttctggtatgacaacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

232

Amino Acids

25.19

Weight (kDa)

6.95

Isoelectric Point (pI)

20.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 2 cut(s) 242, 633
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 495
AcuI CTGAAG 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 1 cut(s) 461
AfiI CCNNNNNNNGG 3 cut(s) 181, 216, 364
AgsI TTSAA 1 cut(s) 609
AjnI CCWGG 2 cut(s) 261, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 2 cut(s) 29, 508
AluI AGCT 2 cut(s) 29, 508
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 76, 446
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 363
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 4 cut(s) 29, 32, 274, 552
ApoI RAATTY 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 172, 366
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 250, 562, 619
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 4 cut(s) 16, 19, 286, 564
BccI CCATC 1 cut(s) 260
BceAI ACGGC 2 cut(s) 448, 515
BciT130I CCWGG 2 cut(s) 263, 564
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 2 cut(s) 76, 446
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 4 cut(s) 30, 33, 275, 553
BlsI GCNGC 4 cut(s) 31, 34, 276, 554
Bme1390I CCNGG 3 cut(s) 211, 263, 564
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 172, 366
BmiI GGNNCC 4 cut(s) 174, 215, 250, 598
BmrFI CCNGG 3 cut(s) 211, 263, 564
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 261, 362, 369
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 216, 364
Bse1I ACTGG 3 cut(s) 543, 556, 676
Bse3DI GCAATG 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 216
BseBI CCWGG 2 cut(s) 263, 564
BseDI CCNNGG 3 cut(s) 261, 362, 369
BseGI GGATG 3 cut(s) 225, 354, 419
BseLI CCNNNNNNNGG 3 cut(s) 181, 216, 364
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 3 cut(s) 543, 556, 676
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 4 cut(s) 16, 19, 286, 564
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 2 cut(s) 210, 217
BslI CCNNNNNNNGG 3 cut(s) 181, 216, 364
BsmAI GTCTC 2 cut(s) 76, 446
BsmBI CGTCTC 1 cut(s) 446
BsnI GGCC 1 cut(s) 368
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 2 cut(s) 16, 216
Bsp13I TCCGGA 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 2 cut(s) 242, 633
BspANI GGCC 1 cut(s) 368
BspEI TCCGGA 1 cut(s) 216
BspLI GGNNCC 4 cut(s) 174, 215, 250, 598
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 3 cut(s) 543, 556, 676
BssECI CCNNGG 3 cut(s) 261, 362, 369
BssMI GATC 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 263, 564
Bst4CI ACNGT 1 cut(s) 440
Bst6I CTCTTC 1 cut(s) 449
BstAUI TGTACA 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 316
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 3 cut(s) 225, 354, 419
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 2 cut(s) 76, 446
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 220
BstNI CCWGG 2 cut(s) 263, 564
BstSCI CCNGG 3 cut(s) 209, 261, 562
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 16, 19, 286, 564
BstV2I GAAGAC 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 563
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 3 cut(s) 225, 354, 419
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 2 cut(s) 129, 594
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 172, 366
Csp6I GTAC 1 cut(s) 460
CviAII CATG 1 cut(s) 388
CviJI RGCY 9 cut(s) 29, 214, 368, 411, 508, 536, 555, 581, 597
CviKI_1 RGCY 9 cut(s) 29, 214, 368, 411, 508, 536, 555, 581, 597
CviQI GTAC 1 cut(s) 460
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DraIII CACNNNGTG 1 cut(s) 335
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 261, 562
EcoT38I GRGCYC 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 446
FaeI CATG 1 cut(s) 391
FaiI YATR 6 cut(s) 320, 327, 383, 389, 578, 687
FatI CATG 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 30, 33, 275, 553
FokI GGATG 3 cut(s) 232, 341, 406
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 4 cut(s) 30, 33, 275, 553
FspBI CTAG 1 cut(s) 87
GluI GCNGC 4 cut(s) 30, 33, 275, 553
GsuI CTGGAG 1 cut(s) 653
HaeIII GGCC 1 cut(s) 368
HapII CCGG 2 cut(s) 210, 217
Hin1II CATG 1 cut(s) 391
HincII GTYRAC 2 cut(s) 526, 646
HindII GTYRAC 2 cut(s) 526, 646
HinfI GANTC 1 cut(s) 162
HpaII CCGG 2 cut(s) 210, 217
HphI GGTGA 3 cut(s) 250, 562, 619
Hpy166II GTNNAC 3 cut(s) 338, 526, 646
Hpy188I TCNGA 1 cut(s) 518
Hpy188III TCNNGA 2 cut(s) 217, 670
Hpy8I GTNNAC 3 cut(s) 338, 526, 646
HpyAV CCTTC 5 cut(s) 70, 175, 386, 615, 646
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 4 cut(s) 168, 274, 329, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 220
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 391
Kpn2I TCCGGA 1 cut(s) 216
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 219, 602
Lsp1109I GCAGC 4 cut(s) 16, 19, 286, 564
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 4 cut(s) 184, 256, 415, 568
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 193, 436, 472
MhlI GDGCHC 2 cut(s) 16, 216
MluCI AATT 2 cut(s) 495, 694
MmeI TCCRAC 2 cut(s) 447, 624
MnlI CCTC 6 cut(s) 102, 187, 320, 357, 360, 372
MroI TCCGGA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 3 cut(s) 117, 510, 697
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 210, 217
MspR9I CCNGG 3 cut(s) 211, 263, 564
MvaI CCWGG 2 cut(s) 263, 564
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 220
NciI CCSGG 1 cut(s) 211
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 4 cut(s) 174, 215, 250, 598
NmuCI GTSAC 3 cut(s) 256, 415, 568
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 4 cut(s) 31, 34, 276, 554
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 261, 562
PspGI CCWGG 2 cut(s) 261, 562
PspN4I GGNNCC 4 cut(s) 174, 215, 250, 598
PspPI GGNCC 2 cut(s) 172, 366
PspPPI RGGWCCY 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SaqAI TTAA 3 cut(s) 117, 510, 697
SatI GCNGC 4 cut(s) 30, 33, 275, 553
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 2 cut(s) 172, 366
ScrFI CCNGG 3 cut(s) 211, 263, 564
SduI GDGCHC 2 cut(s) 16, 216
SetI ASST 8 cut(s) 13, 31, 62, 69, 186, 408, 510, 525
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 172
Sse9I AATT 2 cut(s) 495, 694
SsiI CCGC 2 cut(s) 242, 633
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 3 cut(s) 209, 261, 562
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 1 cut(s) 408
TasI AATT 2 cut(s) 495, 694
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 3 cut(s) 117, 510, 697
Tru9I TTAA 3 cut(s) 117, 510, 697
TscAI CASTG 2 cut(s) 136, 594
TseFI GTSAC 3 cut(s) 256, 415, 568
TseI GCWGC 4 cut(s) 29, 32, 274, 552
Tsp45I GTSAC 3 cut(s) 256, 415, 568
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 136, 594
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.