Prupe.8G035700_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000366
Physical Location & Seq
Forward (+)
3272521 .. 3273725
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G035700.1

Sequence Viewer

Length: 687 bp
ATGAAAGGTGTTTATTTCCTCATAAGCACTCTTGCCATATTGGCATCTGCAACTTTCCTTGTCTCTGCCTCTGACCCCAGTCCTCTTCAGGACTTCTGTGTAGCACTCAATGACACCAAATCTGCTGAAGCAGTGTTTGTGAATGGGAAGTTCTGTAAGGACCCAAAGCTTGCCAATGCAAATGATTTCTTCTTTTCTGGCCTCCAAAATCCAAGAAACACACAAAATCCGCTTGGTTCAAATGTGACAGCCGTGAATGTGGACAACCTACTAGGACTGAACACTCTCGGCATATCCTTGGCTCGCATAGACTTTGCACCAAATGGCCTAAACCCTCCTCACACTCACCCTCGTGCCACTGAAATCCTTGTGGTCTTGGAAGGAACACTCTATGTTGGTTTCGTCACATCCAACGGTGATGGCAATCGCCTATTCACCAAAGTGTTGAACAAGGGAGATGTGTTTGTGTTCCCAATTGGCCTCATTCACTTCCAACTCAATGTGGGACACGTCAACGCTGTAGCCTTCGCTGGGCTTAGCAGCCAGAACCCAGGAGTGATCACCATAGCCAAAGCAGTGTTTGGCTCCCAGCCTCCCATCAACCCTGATGTTCTAGCCAAGGCCTTCCAAGTGGACGACAATGTGGTTGACAATCTTCAGAAACAGTTCTGGTACGACAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

229

Amino Acids

24.46

Weight (kDa)

5.71

Isoelectric Point (pI)

17.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 230
AcuI CTGAAG 3 cut(s) 71, 147, 641
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 1 cut(s) 531
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 2 cut(s) 240, 448
AjiI CACGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 550
AleI CACNNNNGTG 2 cut(s) 351, 440
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 4 cut(s) 199, 325, 478, 621
ApeKI GCWGC 1 cut(s) 540
Asp700I GAANNNNTTC 1 cut(s) 665
AspS9I GGNCC 1 cut(s) 160
AsuHPI GGTGA 4 cut(s) 338, 427, 428, 553
AvaII GGWCC 1 cut(s) 160
BauI CACGAG 1 cut(s) 351
BbvI GCAGC 1 cut(s) 552
BccI CCATC 2 cut(s) 413, 605
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 552
BclI TGATCA 1 cut(s) 558
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 272, 614
BfmI CTRYAG 1 cut(s) 519
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 541
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 542
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 1 cut(s) 160
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 2 cut(s) 162, 586
BmrFI CCNGG 1 cut(s) 552
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 536
BsaBI GATNNNNATC 1 cut(s) 423
BsaJI CCNNGG 3 cut(s) 297, 550, 618
Bsc4I CCNNNNNNNGG 1 cut(s) 531
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 423
BseBI CCWGG 1 cut(s) 552
BseDI CCNNGG 3 cut(s) 297, 550, 618
BseGI GGATG 1 cut(s) 407
BseJI GATNNNNATC 1 cut(s) 423
BseLI CCNNNNNNNGG 1 cut(s) 531
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 552
BseYI CCCAGC 2 cut(s) 530, 588
BshFI GGCC 4 cut(s) 201, 327, 480, 623
BslFI GGGAC 1 cut(s) 519
BslI CCNNNNNNNGG 1 cut(s) 531
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 519
BsnI GGCC 4 cut(s) 201, 327, 480, 623
Bsp143I GATC 1 cut(s) 558
Bsp1720I GCTNAGC 1 cut(s) 536
BspACI CCGC 1 cut(s) 230
BspANI GGCC 4 cut(s) 201, 327, 480, 623
BspLI GGNNCC 2 cut(s) 162, 586
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 297, 550, 618
BssMI GATC 1 cut(s) 558
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 2 cut(s) 297, 618
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 552
Bst4CI ACNGT 2 cut(s) 416, 666
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 171, 304
BstDEI CTNAG 1 cut(s) 536
BstF5I GGATG 1 cut(s) 407
BstKTI GATC 1 cut(s) 561
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 1 cut(s) 558
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 552
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 552
BsuRI GGCC 4 cut(s) 201, 327, 480, 623
BtrI CACGTC 1 cut(s) 511
BtsCI GGATG 1 cut(s) 407
BtsI GCAGTG 2 cut(s) 138, 582
BtsIMutI CAGTG 3 cut(s) 138, 357, 582
Cac8I GCNNGC 2 cut(s) 171, 304
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 1 cut(s) 673
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 1 cut(s) 536
DpnI GATC 1 cut(s) 560
DpnII GATC 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 297, 618
Eco147I AGGCCT 1 cut(s) 623
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 3 cut(s) 71, 147, 641
EcoO109I RGGNCCY 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 550
EcoT14I CCWWGG 2 cut(s) 297, 618
ErhI CCWWGG 2 cut(s) 297, 618
FaiI YATR 6 cut(s) 23, 38, 293, 308, 393, 566
FaqI GGGAC 1 cut(s) 519
FbaI TGATCA 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 541
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 1 cut(s) 541
FspBI CTAG 2 cut(s) 272, 614
GluI GCNGC 1 cut(s) 541
GsaI CCCAGC 2 cut(s) 534, 592
HaeIII GGCC 4 cut(s) 201, 327, 480, 623
HincII GTYRAC 2 cut(s) 514, 649
HindII GTYRAC 2 cut(s) 514, 649
HindIII AAGCTT 1 cut(s) 167
HphI GGTGA 4 cut(s) 338, 427, 428, 553
Hpy166II GTNNAC 4 cut(s) 262, 514, 634, 649
Hpy188I TCNGA 2 cut(s) 73, 660
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 4 cut(s) 262, 514, 634, 649
HpyAV CCTTC 3 cut(s) 374, 535, 634
HpyCH4III ACNGT 2 cut(s) 416, 666
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 3 cut(s) 50, 179, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 536
HpySE526I ACGT 1 cut(s) 510
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 1 cut(s) 558
LmnI GCTCC 1 cut(s) 590
Lsp1109I GCAGC 1 cut(s) 552
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 272, 614
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 244, 403
MalI GATC 1 cut(s) 560
MboI GATC 1 cut(s) 558
MboII GAAGA 3 cut(s) 77, 181, 647
MfeI CAATTG 1 cut(s) 474
MluCI AATT 2 cut(s) 474, 682
MmeI TCCRAC 2 cut(s) 435, 517
MnlI CCTC 9 cut(s) 29, 79, 93, 212, 345, 348, 360, 491, 603
MroXI GAANNNNTTC 1 cut(s) 665
MslI CAYNNNNRTG 2 cut(s) 351, 440
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 552
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 558
NlaIV GGNNCC 2 cut(s) 162, 586
NmeAIII GCCGAG 1 cut(s) 267
NmuCI GTSAC 2 cut(s) 244, 403
OliI CACNNNNGTG 2 cut(s) 351, 440
PceI AGGCCT 1 cut(s) 623
PdmI GAANNNNTTC 1 cut(s) 665
PkrI GCNGC 1 cut(s) 542
PpuMI RGGWCCY 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 550
PspFI CCCAGC 2 cut(s) 530, 588
PspGI CCWGG 1 cut(s) 550
PspN4I GGNNCC 2 cut(s) 162, 586
PspPI GGNCC 1 cut(s) 160
PspPPI RGGWCCY 1 cut(s) 160
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 351, 440
SatI GCNGC 1 cut(s) 541
Sau3AI GATC 1 cut(s) 558
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 552
SetI ASST 4 cut(s) 10, 171, 270, 513
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 2 cut(s) 351, 440
Sse9I AATT 2 cut(s) 474, 682
SseBI AGGCCT 1 cut(s) 623
SsiI CCGC 1 cut(s) 230
SspMI CTAG 2 cut(s) 272, 614
StuI AGGCCT 1 cut(s) 623
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 2 cut(s) 297, 618
TaaI ACNGT 2 cut(s) 416, 666
TaiI ACGT 1 cut(s) 513
TasI AATT 2 cut(s) 474, 682
TscAI CASTG 3 cut(s) 138, 364, 582
TseFI GTSAC 2 cut(s) 244, 403
TseI GCWGC 1 cut(s) 540
Tsp45I GTSAC 2 cut(s) 244, 403
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 138, 364, 582
VpaK11BI GGWCC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 665
XspI CTAG 2 cut(s) 272, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.