Rmu_ssc0000330.1_g000005

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000330.1
OG0000366
Physical Location & Seq
Forward (+)
30614 .. 31457
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000330.1_g000005.1.cds

Sequence Viewer

Length: 720 bp
atgatgaaaggtgctcatttccctacagctgctgcttatttccctactgctgctgcttttgccctgttggcattggcaaccttccaccttgtttctgcttctgatcctagtcctctccaagatttctgtgtagcacttaacaccacccaaactgctgtttctgctgtgtttgtgaatgggaaattctgcaaggacccaaagatggcaacagcagatgatttctttttttcggggctccagattcctcgaaacacatcaaatccggttggttccaacgtcaccgcagtaaacgtggagcaaatagcaggactcaacactcttgggatatccctggctcgcatagactatgcaccaaatggcggactaaaccctcctcacacccaccctcgggccacggaaatccttgtcgtcttggaaggcactctctacgttggcttcgtcacatccaacccggacaaccgcctcatcaccaaagtgttgtacaagggagatgtgtttgtcttcccagttggtctcattcacttccagtttaacgtcggaaaggtcaacgccgtagccattgccggtcttagcagccagaatccaggtgtcatcaccatagccaatgcagtgttcggctccaaccctccaatcaaccctgatgtgctcaccaaggccttccaagttgacaacaatatcgttcagtatctccagaaacagttctggtatgacaacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

239

Amino Acids

25.57

Weight (kDa)

6.49

Isoelectric Point (pI)

22.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 282, 360, 460
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 4 cut(s) 202, 359, 387, 388
AjnI CCWGG 2 cut(s) 330, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
Alw21I GWGCWC 2 cut(s) 16, 648
Alw26I GTCTC 1 cut(s) 518
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 387
AoxI GGCC 2 cut(s) 390, 654
ApeKI GCWGC 5 cut(s) 29, 32, 50, 53, 573
ApoI RAATTY 1 cut(s) 182
Asp700I GAANNNNTTC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 193, 390
AsuC2I CCSGG 1 cut(s) 452
AsuHPI GGTGA 4 cut(s) 271, 460, 586, 640
AvaI CYCGRG 1 cut(s) 387
AvaII GGWCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 493
Bbv12I GWGCWC 2 cut(s) 16, 648
BbvI GCAGC 5 cut(s) 16, 19, 37, 40, 585
BccI CCATC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 536
BciT130I CCWGG 2 cut(s) 332, 585
BcnI CCSGG 1 cut(s) 452
BcoDI GTCTC 1 cut(s) 518
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 5 cut(s) 30, 33, 51, 54, 574
BlsI GCNGC 5 cut(s) 31, 34, 52, 55, 575
Bme1390I CCNGG 3 cut(s) 332, 452, 585
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 387
BmgT120I GGNCC 2 cut(s) 193, 390
BmiI GGNNCC 4 cut(s) 195, 236, 271, 619
BmrFI CCNGG 3 cut(s) 332, 452, 585
BmrI ACTGGG 1 cut(s) 500
BmuI ACTGGG 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 493
BpmI CTGGAG 2 cut(s) 221, 674
BpuMI CCSGG 1 cut(s) 452
BsaI GGTCTC 1 cut(s) 518
BsaJI CCNNGG 4 cut(s) 330, 386, 393, 651
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 4 cut(s) 202, 359, 387, 388
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 2 cut(s) 506, 526
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 2 cut(s) 332, 585
BseDI CCNNGG 4 cut(s) 330, 386, 393, 651
BseGI GGATG 1 cut(s) 443
BseLI CCNNNNNNNGG 4 cut(s) 202, 359, 387, 388
BseMI GCAATG 1 cut(s) 558
BseNI ACTGG 2 cut(s) 506, 526
BseRI GAGGAG 1 cut(s) 363
BseXI GCAGC 5 cut(s) 16, 19, 37, 40, 585
BshFI GGCC 2 cut(s) 392, 656
BsiHKAI GWGCWC 2 cut(s) 16, 648
BsiHKCI CYCGRG 1 cut(s) 387
BsiSI CCGG 3 cut(s) 263, 452, 564
BslI CCNNNNNNNGG 4 cut(s) 202, 359, 387, 388
BsmAI GTCTC 1 cut(s) 518
BsnI GGCC 2 cut(s) 392, 656
Bso31I GGTCTC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 387
Bsp1286I GDGCHC 3 cut(s) 16, 237, 648
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 3 cut(s) 282, 360, 460
BspANI GGCC 2 cut(s) 392, 656
BspLI GGNNCC 4 cut(s) 195, 236, 271, 619
BspPI GGATC 1 cut(s) 98
BspTNI GGTCTC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 558
BsrFI RCCGGY 1 cut(s) 563
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 2 cut(s) 506, 526
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 4 cut(s) 330, 386, 393, 651
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 2 cut(s) 332, 585
Bst4CI ACNGT 1 cut(s) 699
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 569
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 443
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 518
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 59, 68, 161
BstNI CCWGG 2 cut(s) 332, 585
BstSCI CCNGG 3 cut(s) 330, 450, 583
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 5 cut(s) 16, 19, 37, 40, 585
BstV2I GAAGAC 1 cut(s) 493
BsuRI GGCC 2 cut(s) 392, 656
BtgI CCRYGG 1 cut(s) 393
BtsCI GGATG 1 cut(s) 443
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 2 cut(s) 193, 390
Csp6I GTAC 1 cut(s) 481
CviQI GTAC 1 cut(s) 481
DdeI CTNAG 1 cut(s) 569
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EciI GGCGGA 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 651
Eco147I AGGCCT 1 cut(s) 656
Eco24I GRGCYC 1 cut(s) 237
Eco31I GGTCTC 1 cut(s) 518
Eco32I GATATC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 387
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 330, 583
EcoRV GATATC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 651
FaiI YATR 4 cut(s) 341, 348, 599, 708
Fnu4HI GCNGC 5 cut(s) 30, 33, 51, 54, 574
FokI GGATG 1 cut(s) 430
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 5 cut(s) 30, 33, 51, 54, 574
FspBI CTAG 1 cut(s) 108
GluI GCNGC 5 cut(s) 30, 33, 51, 54, 574
GsuI CTGGAG 2 cut(s) 221, 674
HaeIII GGCC 2 cut(s) 392, 656
HapII CCGG 3 cut(s) 263, 452, 564
HincII GTYRAC 2 cut(s) 547, 667
HindII GTYRAC 2 cut(s) 547, 667
HinfI GANTC 3 cut(s) 241, 309, 580
HpaII CCGG 3 cut(s) 263, 452, 564
HphI GGTGA 4 cut(s) 271, 460, 586, 640
Hpy166II GTNNAC 3 cut(s) 289, 547, 667
Hpy188I TCNGA 2 cut(s) 103, 539
Hpy188III TCNNGA 2 cut(s) 238, 691
Hpy8I GTNNAC 3 cut(s) 289, 547, 667
Hpy99I CGWCG 1 cut(s) 539
HpyAV CCTTC 3 cut(s) 91, 410, 667
HpyCH4III ACNGT 1 cut(s) 699
HpyCH4IV ACGT 4 cut(s) 276, 291, 429, 534
HpyCH4V TGCA 3 cut(s) 189, 350, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 68, 161
HpyF3I CTNAG 1 cut(s) 569
HpySE526I ACGT 4 cut(s) 276, 291, 429, 534
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 3 cut(s) 240, 295, 623
Lsp1109I GCAGC 5 cut(s) 16, 19, 37, 40, 585
MaeI CTAG 1 cut(s) 108
MaeII ACGT 4 cut(s) 276, 291, 429, 534
MaeIII GTNAC 2 cut(s) 277, 439
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 493
MhlI GDGCHC 3 cut(s) 16, 237, 648
MluCI AATT 2 cut(s) 182, 715
MlyI GAGTC 1 cut(s) 303
MmeI TCCRAC 4 cut(s) 297, 471, 517, 645
MnlI CCTC 7 cut(s) 123, 255, 381, 384, 396, 473, 636
MroXI GAANNNNTTC 1 cut(s) 698
MseI TTAA 3 cut(s) 138, 531, 718
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 3 cut(s) 263, 452, 564
MspR9I CCNGG 3 cut(s) 332, 452, 585
MvaI CCWGG 2 cut(s) 332, 585
MwoI GCNNNNNNNGC 3 cut(s) 59, 68, 161
NciI CCSGG 1 cut(s) 452
NdeII GATC 1 cut(s) 103
NlaIV GGNNCC 4 cut(s) 195, 236, 271, 619
NmuCI GTSAC 2 cut(s) 277, 439
OliI CACNNNNGTG 1 cut(s) 473
PceI AGGCCT 1 cut(s) 656
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 2 cut(s) 241, 580
PkrI GCNGC 5 cut(s) 31, 34, 52, 55, 575
PleI GAGTC 1 cut(s) 303
PpsI GAGTC 1 cut(s) 303
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 330, 583
PspGI CCWGG 2 cut(s) 330, 583
PspN4I GGNNCC 4 cut(s) 195, 236, 271, 619
PspPI GGNCC 2 cut(s) 193, 390
PspPPI RGGWCCY 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 3 cut(s) 138, 531, 718
SatI GCNGC 5 cut(s) 30, 33, 51, 54, 574
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 193, 390
SchI GAGTC 1 cut(s) 303
ScrFI CCNGG 3 cut(s) 332, 452, 585
SduI GDGCHC 3 cut(s) 16, 237, 648
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 193
SmiMI CAYNNNNRTG 1 cut(s) 473
Sse9I AATT 2 cut(s) 182, 715
SseBI AGGCCT 1 cut(s) 656
SsiI CCGC 3 cut(s) 282, 360, 460
SspMI CTAG 1 cut(s) 108
StuI AGGCCT 1 cut(s) 656
StyD4I CCNGG 3 cut(s) 330, 450, 583
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 1 cut(s) 699
TaiI ACGT 4 cut(s) 279, 294, 432, 537
TaqI TCGA 1 cut(s) 247
TasI AATT 2 cut(s) 182, 715
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 2 cut(s) 241, 580
Tru1I TTAA 3 cut(s) 138, 531, 718
Tru9I TTAA 3 cut(s) 138, 531, 718
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 2 cut(s) 277, 439
TseI GCWGC 5 cut(s) 29, 32, 50, 53, 573
Tsp45I GTSAC 2 cut(s) 277, 439
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 182
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.