Prupe.8G025500_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000366
Physical Location & Seq
Reverse (-)
2330634 .. 2331878
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G025500.1

Sequence Viewer

Length: 681 bp
ATGAAAGGTGTTCATTTCCTCACAAGCACTGTTGCCATATTGGCATTCACAAGCTTCCTTGTGTCCGCCTATGACCCCAGTCCTCTGCAGGATTTCTGCGTAGCAATTAATAAACCCCCATCTGCTGTGTTTGTGAATGGGAAATTCTGCAAGGATCCAAAGTTCGTTACAGCAAATGATTTCTTCTTTTCTGGGCTTCAAATTGCCAAAAGCACAGCAAATCCAGTTGGTTCAACAGTGACAGCCGTGAATGTAGACCAAATAGCAGGATTGAACACTCTTGGCATTTCCCTAGCTCGCATAGATTTCGCACCAAATGGCCTAAACCCTCCTCATACTCACCCTCGTGGCTCAGAAATTCTTGTAGTCTTGGAAGGTACACTCTATGTCGGATTCGTCACATCAAATGCTGATAATAATCGGCTAATCAGCAAGGTGTTGAACAAGGGAGATGTATTTGTGTTCCCAATTGGTCTCATTCACTTCCAACTCAACCTGGGATACGGCAACGCTGTAGCCCTTGCTGGCCTTAGCAGCCAGAACCCAGGAGTGATCACCATAGCCAATGCAGTTTTTGGCTCCAAGCCTCCCATCAACCCTGATGTTTTAGCCAAGGCCTTCCAAGTGGACAACAAATTGGTTGATTATCTTCAGAAACAGTTTTGGTACGAGAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

227

Amino Acids

24.23

Weight (kDa)

7.77

Isoelectric Point (pI)

19.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AciI CCGC 1 cut(s) 66
AclWI GGATC 2 cut(s) 149, 162
AcsI RAATTY 2 cut(s) 143, 357
AcuI CTGAAG 1 cut(s) 635
AfaI GTAC 2 cut(s) 379, 668
AgsI TTSAA 4 cut(s) 200, 234, 274, 442
AjnI CCWGG 2 cut(s) 495, 544
AleI CACNNNNGTG 1 cut(s) 345
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 54, 296
AluI AGCT 2 cut(s) 54, 296
Alw26I GTCTC 1 cut(s) 479
AlwI GGATC 2 cut(s) 149, 162
AoxI GGCC 3 cut(s) 319, 526, 615
ApeKI GCWGC 1 cut(s) 534
ApoI RAATTY 2 cut(s) 143, 357
AseI ATTAAT 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 332, 547
BamHI GGATCC 1 cut(s) 154
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 127, 599
BceAI ACGGC 2 cut(s) 230, 520
BcgI CGANNNNNNTGC 2 cut(s) 289, 323
BciT130I CCWGG 2 cut(s) 497, 546
BciVI GTATCC 1 cut(s) 494
BclI TGATCA 1 cut(s) 552
BcoDI GTCTC 1 cut(s) 479
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 2 cut(s) 86, 513
BfuI GTATCC 1 cut(s) 494
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 536
Bme1390I CCNGG 2 cut(s) 497, 546
BmiI GGNNCC 2 cut(s) 156, 580
BmrFI CCNGG 2 cut(s) 497, 546
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 417
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 3 cut(s) 496, 544, 612
Bse1I ACTGG 2 cut(s) 78, 224
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 2 cut(s) 497, 546
BseDI CCNNGG 3 cut(s) 496, 544, 612
BseJI GATNNNNATC 1 cut(s) 417
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 78, 224
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 546
BshFI GGCC 3 cut(s) 321, 528, 617
BsmAI GTCTC 1 cut(s) 479
BsmI GAATGC 1 cut(s) 44
BsnI GGCC 3 cut(s) 321, 528, 617
Bso31I GGTCTC 1 cut(s) 479
Bsp143I GATC 2 cut(s) 154, 552
BspACI CCGC 1 cut(s) 66
BspANI GGCC 3 cut(s) 321, 528, 617
BspCNI CTCAG 1 cut(s) 365
BspLI GGNNCC 2 cut(s) 156, 580
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 2 cut(s) 149, 162
BspTNI GGTCTC 1 cut(s) 479
BsrI ACTGG 2 cut(s) 78, 224
BssECI CCNNGG 3 cut(s) 496, 544, 612
BssMI GATC 2 cut(s) 154, 552
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 497, 546
Bst4CI ACNGT 3 cut(s) 31, 238, 660
BstC8I GCNNGC 2 cut(s) 298, 526
BstDEI CTNAG 2 cut(s) 352, 530
BstKTI GATC 2 cut(s) 157, 555
BstMAI GTCTC 1 cut(s) 479
BstMBI GATC 2 cut(s) 154, 552
BstMWI GCNNNNNNNGC 2 cut(s) 41, 534
BstNI CCWGG 2 cut(s) 497, 546
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 2 cut(s) 495, 544
BstSFI CTRYAG 2 cut(s) 86, 513
BstV1I GCAGC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 154
BstYI RGATCY 1 cut(s) 154
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 3 cut(s) 321, 528, 617
BtsIMutI CAGTG 2 cut(s) 27, 243
Cac8I GCNNGC 2 cut(s) 298, 526
Csp6I GTAC 2 cut(s) 378, 667
CviQI GTAC 2 cut(s) 378, 667
DdeI CTNAG 2 cut(s) 352, 530
DpnI GATC 2 cut(s) 156, 554
DpnII GATC 2 cut(s) 154, 552
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 612
Eco147I AGGCCT 1 cut(s) 617
Eco31I GGTCTC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 495, 544
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaiI YATR 6 cut(s) 38, 72, 302, 336, 387, 560
FbaI TGATCA 1 cut(s) 552
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 1 cut(s) 535
Fsp4HI GCNGC 1 cut(s) 535
FspBI CTAG 1 cut(s) 293
GluI GCNGC 1 cut(s) 535
HaeIII GGCC 3 cut(s) 321, 528, 617
HindIII AAGCTT 1 cut(s) 52
HinfI GANTC 1 cut(s) 393
HphI GGTGA 2 cut(s) 332, 547
Hpy166II GTNNAC 3 cut(s) 256, 380, 628
Hpy188I TCNGA 3 cut(s) 355, 392, 654
Hpy8I GTNNAC 3 cut(s) 256, 380, 628
HpyAV CCTTC 2 cut(s) 368, 628
HpyCH4III ACNGT 3 cut(s) 31, 238, 660
HpyCH4V TGCA 3 cut(s) 88, 150, 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 534
HpyF3I CTNAG 2 cut(s) 352, 530
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 2 cut(s) 154, 552
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 1 cut(s) 546
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 3 cut(s) 166, 238, 397
MalI GATC 2 cut(s) 156, 554
MboI GATC 2 cut(s) 154, 552
MboII GAAGA 2 cut(s) 175, 641
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 154
MluCI AATT 7 cut(s) 105, 143, 201, 357, 468, 635, 676
MmeI TCCRAC 2 cut(s) 370, 511
MnlI CCTC 6 cut(s) 29, 93, 339, 342, 354, 597
MseI TTAA 2 cut(s) 108, 679
MslI CAYNNNNRTG 1 cut(s) 345
MspR9I CCNGG 2 cut(s) 497, 546
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 44
MvaI CCWGG 2 cut(s) 497, 546
MwoI GCNNNNNNNGC 2 cut(s) 41, 534
NdeII GATC 2 cut(s) 154, 552
NlaIV GGNNCC 2 cut(s) 156, 580
NmuCI GTSAC 2 cut(s) 238, 397
OliI CACNNNNGTG 1 cut(s) 345
PceI AGGCCT 1 cut(s) 617
PctI GAATGC 1 cut(s) 44
PfeI GAWTC 1 cut(s) 393
PkrI GCNGC 1 cut(s) 536
PshAI GACNNNNGTC 1 cut(s) 78
PshBI ATTAAT 1 cut(s) 108
Psp6I CCWGG 2 cut(s) 495, 544
PspGI CCWGG 2 cut(s) 495, 544
PspN4I GGNNCC 2 cut(s) 156, 580
PstI CTGCAG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 154
RsaI GTAC 2 cut(s) 379, 668
RsaNI GTAC 2 cut(s) 378, 667
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 2 cut(s) 108, 679
SatI GCNGC 1 cut(s) 535
Sau3AI GATC 2 cut(s) 154, 552
ScrFI CCNGG 2 cut(s) 497, 546
SetI ASST 6 cut(s) 10, 56, 298, 379, 438, 498
SfcI CTRYAG 2 cut(s) 86, 513
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 7 cut(s) 105, 143, 201, 357, 468, 635, 676
SseBI AGGCCT 1 cut(s) 617
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 293
StuI AGGCCT 1 cut(s) 617
StyD4I CCNGG 2 cut(s) 495, 544
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 3 cut(s) 31, 238, 660
TasI AATT 7 cut(s) 105, 143, 201, 357, 468, 635, 676
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 2 cut(s) 108, 679
Tru9I TTAA 2 cut(s) 108, 679
TscAI CASTG 2 cut(s) 34, 243
TseFI GTSAC 2 cut(s) 238, 397
TseI GCWGC 1 cut(s) 534
Tsp45I GTSAC 2 cut(s) 238, 397
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 34, 243
VspI ATTAAT 1 cut(s) 108
XapI RAATTY 2 cut(s) 143, 357
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.