Prupe.8G025900_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000366
Physical Location & Seq
Reverse (-)
2355345 .. 2356560
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G025900.1

Sequence Viewer

Length: 681 bp
ATGAAAGGAGATCATTTTCTCATAAGCACTCTTGCCTTTTTGGCATTTGCAACGTTCCTTGCCTCCGCCTATGACCCCAGTCCTCTTCAGGACTTCTGTGTAGCACTTAAGGACATCAAAGACGGTGTGTTTGTGAATGGGAAATTCTGCAAGGACCCAAAGCTTGCCAATGCAAATGATTTCTTCTTTTCTGGGCTTCAAAATCCAAGAAACACACAAAATCCGGTTGGTTCAAATGTGACAGCCGTGAACGTGGACAACCTAGCAGGATTGAACACTCTCGGCATATCCTTGGCTCGCATAGACTTTGCACCAAATGGTCTAAACCCTCCTCACACTCACCCTCGTGCCACCGAAATCCTTGTGGTCTTGGAAGGAACACTCTATGTTGGTTTCGTCACATCCAACGGTGATGGCAATCGCCTGTTCACCAAAGTGTTGAACAAGGGAGATGTGTTTGTGTTCCCAATAGGCCTCATTCATTTTCAACTCAATGTGGGACATGTCAACGCTGTAGCCTTTGCTGGGCTTAGCAGCCAGAATCCAGGAGTGATCACCATAGCCAATGCAGTGTTTGGCTCCAAGCCTCCCATCAATCCTGATGTTCTAACCAAGGCCTTCCAAGTTGACAACAAGGTGGTTGACTATCTCCAGAAACAGTTCTGGTACGACAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

227

Amino Acids

24.46

Weight (kDa)

6.49

Isoelectric Point (pI)

16.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AclI AACGTT 1 cut(s) 53
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 1 cut(s) 525
AflII CTTAAG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 502
AgsI TTSAA 5 cut(s) 200, 234, 274, 442, 488
AjnI CCWGG 1 cut(s) 544
AleI CACNNNNGTG 2 cut(s) 345, 434
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
AoxI GGCC 2 cut(s) 472, 615
ApeKI GCWGC 1 cut(s) 534
ApoI RAATTY 1 cut(s) 143
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 659
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 4 cut(s) 332, 421, 422, 547
AvaII GGWCC 1 cut(s) 154
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 407, 599
BceAI ACGGC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 546
BclI TGATCA 1 cut(s) 552
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 1 cut(s) 513
BfrI CTTAAG 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 535
BlpI GCTNAGC 1 cut(s) 530
BlsI GCNGC 1 cut(s) 536
Bme1390I CCNGG 1 cut(s) 546
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 156, 580
BmrFI CCNGG 1 cut(s) 546
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 635
Bpu1102I GCTNAGC 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 2 cut(s) 291, 612
BsaWI WCCGGW 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 525
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 546
BseDI CCNNGG 2 cut(s) 291, 612
BseGI GGATG 1 cut(s) 401
BseJI GATNNNNATC 1 cut(s) 417
BseLI CCNNNNNNNGG 1 cut(s) 525
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 546
BseYI CCCAGC 1 cut(s) 524
BshFI GGCC 2 cut(s) 474, 617
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 1 cut(s) 525
BsmFI GGGAC 1 cut(s) 513
BsnI GGCC 2 cut(s) 474, 617
Bsp143I GATC 2 cut(s) 10, 552
Bsp1720I GCTNAGC 1 cut(s) 530
BspACI CCGC 1 cut(s) 66
BspANI GGCC 2 cut(s) 474, 617
BspLI GGNNCC 2 cut(s) 156, 580
BspTI CTTAAG 1 cut(s) 107
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 291, 612
BssMI GATC 2 cut(s) 10, 552
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 2 cut(s) 291, 612
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 546
Bst4CI ACNGT 3 cut(s) 125, 410, 660
Bst6I CTCTTC 1 cut(s) 90
BstAFI CTTAAG 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 165, 298
BstDEI CTNAG 1 cut(s) 530
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 2 cut(s) 13, 555
BstMBI GATC 2 cut(s) 10, 552
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 546
BstNSI RCATGY 1 cut(s) 506
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 544
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 546
BsuRI GGCC 2 cut(s) 474, 617
BtsCI GGATG 1 cut(s) 401
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 2 cut(s) 165, 298
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 1 cut(s) 667
CviAII CATG 1 cut(s) 503
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 1 cut(s) 530
DpnI GATC 2 cut(s) 12, 554
DpnII GATC 2 cut(s) 10, 552
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 291, 612
Eco147I AGGCCT 2 cut(s) 474, 617
Eco47I GGWCC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 71
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 544
EcoT14I CCWWGG 2 cut(s) 291, 612
ErhI CCWWGG 2 cut(s) 291, 612
FaeI CATG 1 cut(s) 506
FaiI YATR 7 cut(s) 23, 72, 287, 302, 387, 504, 560
FaqI GGGAC 1 cut(s) 513
FatI CATG 1 cut(s) 502
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 1 cut(s) 535
FokI GGATG 1 cut(s) 388
Fsp4HI GCNGC 1 cut(s) 535
FspBI CTAG 1 cut(s) 263
GluI GCNGC 1 cut(s) 535
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 635
HaeIII GGCC 2 cut(s) 474, 617
HapII CCGG 1 cut(s) 224
Hin1II CATG 1 cut(s) 506
HincII GTYRAC 3 cut(s) 508, 628, 643
HindII GTYRAC 3 cut(s) 508, 628, 643
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 541
HpaII CCGG 1 cut(s) 224
HphI GGTGA 4 cut(s) 332, 421, 422, 547
Hpy166II GTNNAC 6 cut(s) 250, 256, 429, 508, 628, 643
Hpy188III TCNNGA 3 cut(s) 89, 599, 652
Hpy8I GTNNAC 6 cut(s) 250, 256, 429, 508, 628, 643
HpyAV CCTTC 2 cut(s) 368, 628
HpyCH4III ACNGT 3 cut(s) 125, 410, 660
HpyCH4IV ACGT 2 cut(s) 53, 252
HpyCH4V TGCA 5 cut(s) 50, 150, 173, 311, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 530
HpySE526I ACGT 2 cut(s) 53, 252
Hsp92II CATG 1 cut(s) 506
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 2 cut(s) 10, 552
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 1 cut(s) 546
MaeI CTAG 1 cut(s) 263
MaeII ACGT 2 cut(s) 53, 252
MaeIII GTNAC 2 cut(s) 238, 397
MalI GATC 2 cut(s) 12, 554
MboI GATC 2 cut(s) 10, 552
MboII GAAGA 2 cut(s) 77, 175
MluCI AATT 2 cut(s) 143, 676
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 7 cut(s) 73, 93, 339, 342, 354, 485, 597
MroXI GAANNNNTTC 1 cut(s) 659
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 345, 434
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 546
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 10, 552
NlaIII CATG 1 cut(s) 506
NlaIV GGNNCC 2 cut(s) 156, 580
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 2 cut(s) 238, 397
NspI RCATGY 1 cut(s) 506
OliI CACNNNNGTG 2 cut(s) 345, 434
PceI AGGCCT 2 cut(s) 474, 617
PciI ACATGT 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 659
PfeI GAWTC 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 544
PkrI GCNGC 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 502
PshAI GACNNNNGTC 1 cut(s) 78
Psp1406I AACGTT 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 1 cut(s) 544
PspN4I GGNNCC 2 cut(s) 156, 580
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 2 cut(s) 345, 434
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 535
Sau3AI GATC 2 cut(s) 10, 552
Sau96I GGNCC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 546
SetI ASST 5 cut(s) 56, 165, 255, 264, 639
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 2 cut(s) 345, 434
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 143, 676
SseBI AGGCCT 2 cut(s) 474, 617
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 263
StuI AGGCCT 2 cut(s) 474, 617
StyD4I CCNGG 1 cut(s) 544
StyI CCWWGG 2 cut(s) 291, 612
TaaI ACNGT 3 cut(s) 125, 410, 660
TaiI ACGT 2 cut(s) 56, 255
TasI AATT 2 cut(s) 143, 676
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 2 cut(s) 238, 397
TseI GCWGC 1 cut(s) 534
Tsp45I GTSAC 2 cut(s) 238, 397
TspDTI ATGAA 2 cut(s) 17, 470
TspRI CASTG 1 cut(s) 576
Vha464I CTTAAG 1 cut(s) 107
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 659
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.