FvH4_5g18470

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000366
Physical Location & Seq
Forward (+)
10644216 .. 10644617
402 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18470.t1

Sequence Viewer

Length: 273 bp
ATGATGAAAGGTGCTCATTTCCCTGCTACAGCTGCTGCTTTTTCCCTACTGGCATTGGCGACCTTCCACCTTGTCTCTGCCTCTGATCCTAGTTCTCTCCAAGATTTCTGTGTAGCACTTAAGAACACTGATGTGTTTGTGAATGGGAAATTATGCAAGGACCCAAAGCTTGTAACAGAAGACGATTTCTTCTTTGACGGGCTCCGGATGCCCGGAAACACATCAAATGCGGTTGGTTCCAAGGTCACCCCGGCGAATGTGGAGAGCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

91

Amino Acids

9.55

Weight (kDa)

6.01

Isoelectric Point (pI)

23.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 1 cut(s) 230
AclWI GGATC 1 cut(s) 80
AflII CTTAAG 1 cut(s) 119
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 2 cut(s) 32, 169
AluI AGCT 2 cut(s) 32, 169
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 32, 35
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 2 cut(s) 213, 251
AsuHPI GGTGA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 160
BanII GRGCYC 1 cut(s) 204
BbsI GAAGAC 1 cut(s) 186
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 2 cut(s) 19, 22
BcnI CCSGG 2 cut(s) 213, 251
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 2 cut(s) 33, 36
BlsI GCNGC 2 cut(s) 34, 37
Bme1390I CCNGG 2 cut(s) 213, 251
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 3 cut(s) 162, 203, 238
BmrFI CCNGG 2 cut(s) 213, 251
BmsI GCATC 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 186
BpuMI CCSGG 2 cut(s) 213, 251
BsaJI CCNNGG 2 cut(s) 240, 249
BsaWI WCCGGW 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 240, 249
BseGI GGATG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 19, 22
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 3 cut(s) 205, 213, 251
BsmAI GTCTC 1 cut(s) 79
Bsp1286I GDGCHC 2 cut(s) 16, 204
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 204
BspLI GGNNCC 3 cut(s) 162, 203, 238
BspPI GGATC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 119
BsrI ACTGG 1 cut(s) 54
BssECI CCNNGG 2 cut(s) 240, 249
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 240
BstAFI CTTAAG 1 cut(s) 119
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 32, 208
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 211, 249
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 19, 22
BstV2I GAAGAC 1 cut(s) 186
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 126
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 160
CviJI RGCY 3 cut(s) 32, 169, 202
CviKI_1 RGCY 3 cut(s) 32, 169, 202
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 160
Eco91I GGTNACC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 160
EcoO65I GGTNACC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 240
FaiI YATR 1 cut(s) 154
Fnu4HI GCNGC 2 cut(s) 33, 36
FokI GGATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 33, 36
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 33, 36
HapII CCGG 3 cut(s) 205, 213, 251
HindIII AAGCTT 1 cut(s) 167
HpaII CCGG 3 cut(s) 205, 213, 251
HphI GGTGA 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 208
Kpn2I TCCGGA 1 cut(s) 204
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 5 cut(s) 35, 36, 218, 226, 264
Lsp1109I GCAGC 2 cut(s) 19, 22
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 90
MaeIII GTNAC 2 cut(s) 172, 244
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 181, 191
MhlI GDGCHC 2 cut(s) 16, 204
MluCI AATT 1 cut(s) 149
MnlI CCTC 1 cut(s) 91
MroI TCCGGA 1 cut(s) 204
MseI TTAA 1 cut(s) 120
MslI CAYNNNNRTG 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 119
MspI CCGG 3 cut(s) 205, 213, 251
MspR9I CCNGG 2 cut(s) 213, 251
MwoI GCNNNNNNNGC 2 cut(s) 32, 208
NciI CCSGG 2 cut(s) 213, 251
NdeII GATC 1 cut(s) 85
NlaIV GGNNCC 3 cut(s) 162, 203, 238
NmuCI GTSAC 1 cut(s) 244
OliI CACNNNNGTG 1 cut(s) 131
PkrI GCNGC 2 cut(s) 34, 37
PpuMI RGGWCCY 1 cut(s) 160
Psp5II RGGWCCY 1 cut(s) 160
PspEI GGTNACC 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 162, 203, 238
PspPI GGNCC 1 cut(s) 160
PspPPI RGGWCCY 1 cut(s) 160
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 131
SaqAI TTAA 1 cut(s) 120
SatI GCNGC 2 cut(s) 33, 36
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 160
ScrFI CCNGG 2 cut(s) 213, 251
SduI GDGCHC 2 cut(s) 16, 204
SetI ASST 6 cut(s) 13, 34, 65, 72, 171, 246
SfaNI GCATC 1 cut(s) 198
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 211, 249
StyI CCWWGG 1 cut(s) 240
TasI AATT 1 cut(s) 149
Tru1I TTAA 1 cut(s) 120
Tru9I TTAA 1 cut(s) 120
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 2 cut(s) 32, 35
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 133
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 160
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.