Rw7G000560

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000366
Physical Location & Seq
Forward (+)
475396 .. 476211
816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000560.1

Sequence Viewer

Length: 696 bp
ATGAAAGGTGCTCATTGCCCTACAGCTGCTGCTTTTGCCCTATTGGCATTGGCAACCTTCCACCTTGTCTCTGCCTTTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTGAACACCACCAACACTGATATTTCTGCTGTGTTTGTGAATGGGAGATTCTGCAAGGACCCAAAGATGGTAACACCAGAGGATTTCTTCTTTTCCGGCCTCCGGATGCGTGGAAACACATCAAATCCGCTTGGTTCCATCGTCACCCAGGCGAATGTGCAGCAAATAGCAGGACTGAACACTCTTGGGGTATCCCTCGCTCGCATAGACTATGCACTTGGTGGACTAAACCCTCCTCACATCCACCCTCGGGCCACGGAAGTCCTTATGGTCATGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCAACGATAACGGCAACCGTCTCTTCAGCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCATTTGCTCAAATTCACTTCCAGCTTAACATCGGAAAGGTCAACGCCGTAGCCATTTCCAGTTTTAGCAGCCAGTTTCCTGGTGTCACCACCATAGCCAATGCAGTGTTCGGCTCCAACCCTTCAATCAACCCTGATGTTCTCACCACCGCCTTCCAAGTTGACAAAAATGTCGTTCAGTATCTCCAGAACCAGTTCTGGTATGACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

231

Amino Acids

25.06

Weight (kDa)

6.49

Isoelectric Point (pI)

22.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 70 - 220 1.9e-48 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 650
AccIII TCCGGA 1 cut(s) 213
AciI CCGC 2 cut(s) 239, 630
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 492
AcuI CTGAAG 1 cut(s) 427
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 3 cut(s) 178, 213, 361
AgsI TTSAA 1 cut(s) 606
AjnI CCWGG 2 cut(s) 258, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AluBI AGCT 2 cut(s) 26, 505
AluI AGCT 2 cut(s) 26, 505
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 2 cut(s) 73, 443
AlwI GGATC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 29
Ama87I CYCGRG 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 2 cut(s) 208, 363
ApeKI GCWGC 4 cut(s) 26, 29, 271, 549
ApoI RAATTY 1 cut(s) 492
Asp700I GAANNNNTTC 1 cut(s) 674
AspS9I GGNCC 2 cut(s) 169, 363
AsuHPI GGTGA 3 cut(s) 247, 559, 616
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 4 cut(s) 13, 16, 283, 561
BccI CCATC 2 cut(s) 172, 257
BceAI ACGGC 2 cut(s) 445, 512
BciT130I CCWGG 2 cut(s) 260, 561
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 73, 443
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 21
BfuI GTATCC 1 cut(s) 313
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 4 cut(s) 27, 30, 272, 550
BlsI GCNGC 4 cut(s) 28, 31, 273, 551
Bme1390I CCNGG 2 cut(s) 260, 561
Bme18I GGWCC 1 cut(s) 169
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 169, 363
BmiI GGNNCC 3 cut(s) 171, 247, 595
BmrFI CCNGG 2 cut(s) 260, 561
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 650
BsaJI CCNNGG 3 cut(s) 258, 359, 366
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 213, 361
Bse1I ACTGG 3 cut(s) 540, 553, 673
Bse3DI GCAATG 1 cut(s) 13
BseAI TCCGGA 1 cut(s) 213
BseBI CCWGG 2 cut(s) 260, 561
BseDI CCNNGG 3 cut(s) 258, 359, 366
BseGI GGATG 3 cut(s) 222, 351, 416
BseLI CCNNNNNNNGG 3 cut(s) 178, 213, 361
BseMI GCAATG 1 cut(s) 13
BseNI ACTGG 3 cut(s) 540, 553, 673
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 4 cut(s) 13, 16, 283, 561
BsgI GTGCAG 1 cut(s) 290
BshFI GGCC 2 cut(s) 210, 365
BsiHKAI GWGCWC 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 2 cut(s) 207, 214
BslI CCNNNNNNNGG 3 cut(s) 178, 213, 361
BsmAI GTCTC 2 cut(s) 73, 443
BsmBI CGTCTC 1 cut(s) 443
BsnI GGCC 2 cut(s) 210, 365
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 239, 630
BspANI GGCC 2 cut(s) 210, 365
BspEI TCCGGA 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 171, 247, 595
BspPI GGATC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 3 cut(s) 540, 553, 673
BssECI CCNNGG 3 cut(s) 258, 359, 366
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 260, 561
Bst4CI ACNGT 1 cut(s) 437
Bst6I CTCTTC 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 1 cut(s) 313
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 3 cut(s) 222, 351, 416
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 73, 443
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 35, 44
BstNI CCWGG 2 cut(s) 260, 561
BstSCI CCNGG 2 cut(s) 258, 559
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 4 cut(s) 13, 16, 283, 561
BstV2I GAAGAC 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 560
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 210, 365
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 3 cut(s) 222, 351, 416
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 3 cut(s) 110, 126, 591
Cac8I GCNNGC 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 169, 363
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 385
CviJI RGCY 9 cut(s) 26, 210, 365, 408, 505, 533, 552, 578, 594
CviKI_1 RGCY 9 cut(s) 26, 210, 365, 408, 505, 533, 552, 578, 594
CviQI GTAC 1 cut(s) 457
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraIII CACNNNGTG 1 cut(s) 332
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 360
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 2 cut(s) 258, 559
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 1 cut(s) 388
FaiI YATR 6 cut(s) 317, 324, 380, 386, 575, 684
FatI CATG 1 cut(s) 384
Fnu4HI GCNGC 4 cut(s) 27, 30, 272, 550
FokI GGATG 3 cut(s) 229, 338, 403
Fsp4HI GCNGC 4 cut(s) 27, 30, 272, 550
FspBI CTAG 1 cut(s) 84
GluI GCNGC 4 cut(s) 27, 30, 272, 550
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 2 cut(s) 210, 365
HapII CCGG 2 cut(s) 207, 214
Hin1II CATG 1 cut(s) 388
HincII GTYRAC 2 cut(s) 523, 643
HindII GTYRAC 2 cut(s) 523, 643
HinfI GANTC 1 cut(s) 159
HpaII CCGG 2 cut(s) 207, 214
HphI GGTGA 3 cut(s) 247, 559, 616
Hpy166II GTNNAC 3 cut(s) 335, 523, 643
Hpy188I TCNGA 1 cut(s) 515
Hpy188III TCNNGA 2 cut(s) 214, 667
Hpy8I GTNNAC 3 cut(s) 335, 523, 643
HpyAV CCTTC 4 cut(s) 67, 383, 612, 643
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 4 cut(s) 165, 271, 326, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 44
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 599
Lsp1109I GCAGC 4 cut(s) 13, 16, 283, 561
LweI GCATC 1 cut(s) 207
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 4 cut(s) 181, 253, 412, 565
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 3 cut(s) 190, 433, 469
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 492, 691
MmeI TCCRAC 2 cut(s) 444, 621
MnlI CCTC 7 cut(s) 99, 184, 221, 317, 354, 357, 369
MroI TCCGGA 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 2 cut(s) 507, 694
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 2 cut(s) 207, 214
MspR9I CCNGG 2 cut(s) 260, 561
MvaI CCWGG 2 cut(s) 260, 561
MwoI GCNNNNNNNGC 2 cut(s) 35, 44
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 3 cut(s) 171, 247, 595
NmuCI GTSAC 3 cut(s) 253, 412, 565
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 4 cut(s) 28, 31, 273, 551
PpuMI RGGWCCY 1 cut(s) 169
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 2 cut(s) 258, 559
PspGI CCWGG 2 cut(s) 258, 559
PspN4I GGNNCC 3 cut(s) 171, 247, 595
PspPI GGNCC 2 cut(s) 169, 363
PspPPI RGGWCCY 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 507, 694
SatI GCNGC 4 cut(s) 27, 30, 272, 550
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 2 cut(s) 169, 363
ScrFI CCNGG 2 cut(s) 260, 561
SduI GDGCHC 1 cut(s) 13
SetI ASST 7 cut(s) 10, 28, 59, 66, 405, 507, 522
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 169
Sse9I AATT 2 cut(s) 492, 691
SsiI CCGC 2 cut(s) 239, 630
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 258, 559
TaaI ACNGT 1 cut(s) 437
TaiI ACGT 1 cut(s) 405
TasI AATT 2 cut(s) 492, 691
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 507, 694
Tru9I TTAA 2 cut(s) 507, 694
TscAI CASTG 3 cut(s) 117, 133, 591
TseFI GTSAC 3 cut(s) 253, 412, 565
TseI GCWGC 4 cut(s) 26, 29, 271, 549
Tsp45I GTSAC 3 cut(s) 253, 412, 565
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 3 cut(s) 117, 133, 591
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.