Prupe.8G035800_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000366
Physical Location & Seq
Forward (+)
3275664 .. 3276940
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G035800.1

Sequence Viewer

Length: 705 bp
ATGAAAGGTGTTCATTTCCTCATAAGCACTCTTGCCATATTGGCATCTGCAACCTTCCTTGTCTCTGCCTCTGACCCCAGTCCTCTTCAGGATTTCTGTGTAGCACTTAATGACAACAAATCTGCTGGTGGATATTTCGGTGCAAACGCAGTGTTTGTGAATGGGAAATTCTGCAAGGACCCAAAGCTTGTCAATGCAAATGATTTCTTCTTTTCTGGCCTCCAAAACCCAAGAAACACACAAAATCCGCTTGGTTCAAATGTGACAACTGTGAATGTGGACCAAATAGCGGGGTTGAACACTCTCGGCATATCCCTGACTCGCATAGACTTTGCACCAAATGGCCTAAACCCTCCTCACACTCACCCTCGTGCCTCCGAATTTCTTGTGGTCTTGGAAGGAACACTCTATGTTGGTTTCGTCACATCCAACGGTGATGGCAATCGCCTATTCACCAAAGTGTTGAACAAGGGGGATGTGTTTGTGTTCCCAATCGGCCTCATTCACTTCCAACTCAATGTGGGACACGTCAACGCTGTAGCCTTCGCTGGGCTTAGCAGCCAGAACCCAGGAGTGATCACCATAGCCAATGCAGTGTTTGGCTCCAAGCCTCCCATCAACCCTGATGTTCTAGCCAAGGCCTTCCAAGTGGACGACAATGTGGTTGACTATCTTCAGAAACAGTTGTGGTACGACAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

235

Amino Acids

25.07

Weight (kDa)

6.16

Isoelectric Point (pI)

16.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 248, 290
AcsI RAATTY 2 cut(s) 167, 380
AcuI CTGAAG 2 cut(s) 71, 659
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 2 cut(s) 289, 549
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 3 cut(s) 258, 298, 466
AjiI CACGTC 1 cut(s) 529
AjnI CCWGG 1 cut(s) 568
AleI CACNNNNGTG 2 cut(s) 369, 458
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 4 cut(s) 217, 343, 496, 639
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 2 cut(s) 167, 380
AspS9I GGNCC 2 cut(s) 178, 280
AsuHPI GGTGA 4 cut(s) 356, 445, 446, 571
AvaII GGWCC 2 cut(s) 178, 280
BauI CACGAG 1 cut(s) 369
BbvI GCAGC 1 cut(s) 570
BccI CCATC 2 cut(s) 431, 623
BciT130I CCWGG 1 cut(s) 570
BclI TGATCA 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 559
BlpI GCTNAGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 2 cut(s) 178, 280
BmgBI CACGTC 1 cut(s) 529
BmgT120I GGNCC 2 cut(s) 178, 280
BmiI GGNNCC 2 cut(s) 180, 604
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 568, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 549
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 568, 636
BseGI GGATG 2 cut(s) 425, 481
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 289, 549
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 570
BseYI CCCAGC 1 cut(s) 548
BshFI GGCC 4 cut(s) 219, 345, 498, 641
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 2 cut(s) 289, 549
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 4 cut(s) 219, 345, 498, 641
Bsp143I GATC 1 cut(s) 576
Bsp1720I GCTNAGC 1 cut(s) 554
BspACI CCGC 2 cut(s) 248, 290
BspANI GGCC 4 cut(s) 219, 345, 498, 641
BspLI GGNNCC 2 cut(s) 180, 604
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 568, 636
BssMI GATC 1 cut(s) 576
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 3 cut(s) 271, 434, 684
Bst6I CTCTTC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 425, 481
BstKTI GATC 1 cut(s) 579
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 1 cut(s) 576
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 570
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 1 cut(s) 570
BsuRI GGCC 4 cut(s) 219, 345, 498, 641
BtrI CACGTC 1 cut(s) 529
BtsCI GGATG 2 cut(s) 425, 481
BtsI GCAGTG 2 cut(s) 156, 600
BtsIMutI CAGTG 2 cut(s) 156, 600
Cfr13I GGNCC 2 cut(s) 178, 280
Csp6I GTAC 1 cut(s) 691
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 1 cut(s) 554
DpnI GATC 1 cut(s) 578
DpnII GATC 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 636
Eco147I AGGCCT 1 cut(s) 641
Eco47I GGWCC 2 cut(s) 178, 280
Eco57I CTGAAG 2 cut(s) 71, 659
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 636
FaiI YATR 6 cut(s) 23, 38, 311, 326, 411, 584
FaqI GGGAC 1 cut(s) 537
FauI CCCGC 1 cut(s) 283
FbaI TGATCA 1 cut(s) 576
Fnu4HI GCNGC 1 cut(s) 559
FokI GGATG 2 cut(s) 412, 488
Fsp4HI GCNGC 1 cut(s) 559
FspBI CTAG 1 cut(s) 632
GluI GCNGC 1 cut(s) 559
GsaI CCCAGC 1 cut(s) 552
HaeIII GGCC 4 cut(s) 219, 345, 498, 641
HincII GTYRAC 2 cut(s) 532, 667
HindII GTYRAC 2 cut(s) 532, 667
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 319
HphI GGTGA 4 cut(s) 356, 445, 446, 571
Hpy166II GTNNAC 4 cut(s) 280, 532, 652, 667
Hpy188I TCNGA 3 cut(s) 73, 379, 678
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 4 cut(s) 280, 532, 652, 667
HpyAV CCTTC 4 cut(s) 64, 392, 553, 652
HpyCH4III ACNGT 3 cut(s) 271, 434, 684
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 6 cut(s) 50, 143, 174, 197, 335, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 554
HpySE526I ACGT 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 576
Kzo9I GATC 1 cut(s) 576
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 1 cut(s) 570
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 632
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 2 cut(s) 262, 421
MalI GATC 1 cut(s) 578
MboI GATC 1 cut(s) 576
MboII GAAGA 3 cut(s) 77, 199, 665
MluCI AATT 3 cut(s) 167, 380, 700
MlyI GAGTC 1 cut(s) 313
MmeI TCCRAC 2 cut(s) 453, 535
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 369, 458
MspR9I CCNGG 1 cut(s) 570
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 576
NlaIV GGNNCC 2 cut(s) 180, 604
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 262, 421
OliI CACNNNNGTG 2 cut(s) 369, 458
PceI AGGCCT 1 cut(s) 641
PkrI GCNGC 1 cut(s) 560
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PpuMI RGGWCCY 1 cut(s) 178
PshAI GACNNNNGTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 2 cut(s) 180, 604
PspPI GGNCC 2 cut(s) 178, 280
PspPPI RGGWCCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
RseI CAYNNNNRTG 2 cut(s) 369, 458
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 1 cut(s) 559
Sau3AI GATC 1 cut(s) 576
Sau96I GGNCC 2 cut(s) 178, 280
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 570
SetI ASST 4 cut(s) 10, 56, 189, 531
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 2 cut(s) 178, 280
SmiMI CAYNNNNRTG 2 cut(s) 369, 458
Sse9I AATT 3 cut(s) 167, 380, 700
SseBI AGGCCT 1 cut(s) 641
SsiI CCGC 2 cut(s) 248, 290
SspMI CTAG 1 cut(s) 632
StuI AGGCCT 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 3 cut(s) 271, 434, 684
TaiI ACGT 1 cut(s) 531
TasI AATT 3 cut(s) 167, 380, 700
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 2 cut(s) 156, 600
TseFI GTSAC 2 cut(s) 262, 421
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 2 cut(s) 262, 421
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 156, 600
VpaK11BI GGWCC 2 cut(s) 178, 280
XapI RAATTY 2 cut(s) 167, 380
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.