Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000366

Physical Location & Seq

Genomic Coordinates Forward (+)

15585028 .. 15586029

Gene Structure 1002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCAATGAAGAGTCTCTCATTTCTTGCAGCTCTATCTCTCTTGGCTTTAACACTTCCATTAACCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACAGCTCAGCAAATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCAAAGCTGGTCACAGCAGATGACTTCTTTTTCCCAGGGCTTCAAACTGCAAGACCCATAACAAGTCCTGTTGGGTCGACCGTGACAGCCGTCAATGTTAACAACCTTCTTGGGTTAAACACTCTTGGAATCTCCCTTGTCCGTATTGATTATGCGGTTGACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGAGATCTTGGTTGTCGAACTAGGAACACTTCTCGTAGGGTTTGTTACATCAAACCCCGATAATCGCCTATTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCATCCATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCAAAACCCTGGTGTCATCACTATTGCACCAACCGTGTTTGGGGCTAACCCAGCCATCAACCCAAATATTCTTGCAAAGGCGTTCCAGGTTGACCCAAGGGTTGTCATGGATCTACAGACCAAGTTCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0016020 GO:0030312 GO:0031012 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

223

Amino Acids

23.63

Weight (kDa)

6.82

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	67 - 213	1.1e-52	Cupin
Cupin_2	PF07883	102 - 174	1.8e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca	FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica	MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica	Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis	pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis	RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata	RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora	Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii	Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa	Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha	Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana	Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	101
AccB1I	GGYRCC	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	527
AccI	GTMKAC	1 cut(s)	236
AciI	CCGC	3 cut(s)	314, 512, 525
AclWI	GGATC	2 cut(s)	71, 654
AcvI	CACGTG	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	166, 576
AgsI	TTSAA	4 cut(s)	92, 203, 488, 664
AjnI	CCWGG	3 cut(s)	193, 544, 621
AleI	CACNNNNGTG	1 cut(s)	348
AluBI	AGCT	3 cut(s)	32, 117, 166
AluI	AGCT	3 cut(s)	32, 117, 166
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	2 cut(s)	71, 654
ApeKI	GCWGC	2 cut(s)	29, 534
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	505
BbrPI	CACGTG	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	41, 546
BccI	CCATC	1 cut(s)	599
BceAI	ACGGC	1 cut(s)	233
BciT130I	CCWGG	3 cut(s)	195, 546, 623
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	650
BfoI	RGCGCY	1 cut(s)	111
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	3 cut(s)	30, 525, 535
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	3 cut(s)	31, 526, 536
Bme1390I	CCNGG	3 cut(s)	195, 546, 623
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	159, 507
BmrFI	CCNGG	3 cut(s)	195, 546, 623
BoxI	GACNNNNGTC	1 cut(s)	248
Bpu1102I	GCTNAGC	1 cut(s)	118
BsaAI	YACGTR	1 cut(s)	350
BsaJI	CCNNGG	5 cut(s)	193, 194, 354, 544, 632
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 576
Bse3DI	GCAATG	2 cut(s)	12, 66
BseBI	CCWGG	3 cut(s)	195, 546, 623
BseDI	CCNNGG	5 cut(s)	193, 194, 354, 544, 632
BseGI	GGATG	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	166, 576
BseMI	GCAATG	2 cut(s)	12, 66
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	41, 546
BseYI	CCCAGC	1 cut(s)	586
Bsh1285I	CGRYCG	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	505
BsiEI	CGRYCG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	166, 576
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	518
Bsp143I	GATC	3 cut(s)	76, 360, 646
Bsp1720I	GCTNAGC	1 cut(s)	118
BspACI	CCGC	3 cut(s)	314, 512, 525
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	159, 507
BspPI	GGATC	2 cut(s)	71, 654
BspT107I	GGYRCC	1 cut(s)	505
BsrBI	CCGCTC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	12, 66
BssECI	CCNNGG	5 cut(s)	193, 194, 354, 544, 632
BssMI	GATC	3 cut(s)	76, 360, 646
BssT1I	CCWWGG	1 cut(s)	632
Bst2UI	CCWGG	3 cut(s)	195, 546, 623
Bst4CI	ACNGT	2 cut(s)	241, 571
Bst6I	CTCTTC	1 cut(s)	5
BstBAI	YACGTR	1 cut(s)	350
BstDEI	CTNAG	2 cut(s)	118, 530
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	79, 363, 649
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	3 cut(s)	76, 360, 646
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 524, 587
BstNI	CCWGG	3 cut(s)	195, 546, 623
BstPAI	GACNNNNGTC	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	193, 544, 621
BstSFI	CTRYAG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	41, 546
BstX2I	RGATCY	2 cut(s)	360, 646
BstXI	CCANNNNNNTGG	1 cut(s)	545
BstYI	RGATCY	2 cut(s)	360, 646
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	477
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	157
CviAII	CATG	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	118, 530
DpnI	GATC	3 cut(s)	78, 362, 648
DpnII	GATC	3 cut(s)	76, 360, 646
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	632
Eco47I	GGWCC	1 cut(s)	157
Eco72I	CACGTG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	157
EcoRII	CCWGG	3 cut(s)	193, 544, 621
EcoT14I	CCWWGG	1 cut(s)	632
ErhI	CCWWGG	1 cut(s)	632
FaeI	CATG	1 cut(s)	646
FaiI	YATR	3 cut(s)	218, 312, 644
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	236
Fnu4HI	GCNGC	3 cut(s)	30, 525, 535
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	3 cut(s)	30, 525, 535
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	3 cut(s)	30, 525, 535
GsaI	CCCAGC	1 cut(s)	590
HaeII	RGCGCY	1 cut(s)	111
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	646
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	4 cut(s)	237, 259, 319, 628
HindII	GTYRAC	4 cut(s)	237, 259, 319, 628
HinfI	GANTC	3 cut(s)	13, 288, 474
HpaI	GTTAAC	1 cut(s)	259
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	4 cut(s)	237, 259, 319, 628
Hpy188I	TCNGA	1 cut(s)	76
Hpy188III	TCNNGA	3 cut(s)	92, 467, 664
Hpy8I	GTNNAC	4 cut(s)	237, 259, 319, 628
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	2 cut(s)	241, 571
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	29, 153, 209, 518, 563, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 524, 587
HpyF3I	CTNAG	2 cut(s)	118, 530
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	1 cut(s)	646
HspAI	GCGC	1 cut(s)	108
KspAI	GTTAAC	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	76, 360, 646
Lsp1109I	GCAGC	2 cut(s)	41, 546
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	3 cut(s)	169, 241, 400
MalI	GATC	3 cut(s)	78, 362, 648
MbiI	CCGCTC	1 cut(s)	527
MboI	GATC	3 cut(s)	76, 360, 646
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	2 cut(s)	360, 646
MlyI	GAGTC	2 cut(s)	22, 468
MnlI	CCTC	3 cut(s)	345, 439, 463
MseI	TTAA	5 cut(s)	50, 62, 138, 258, 275
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	512
MspR9I	CCNGG	3 cut(s)	195, 546, 623
Mva1269I	GAATGC	1 cut(s)	518
MvaI	CCWGG	3 cut(s)	195, 546, 623
MwoI	GCNNNNNNNGC	3 cut(s)	114, 524, 587
NdeII	GATC	3 cut(s)	76, 360, 646
NlaIII	CATG	1 cut(s)	646
NlaIV	GGNNCC	2 cut(s)	159, 507
NmuCI	GTSAC	2 cut(s)	169, 241
OliI	CACNNNNGTG	1 cut(s)	348
PasI	CCCWGGG	1 cut(s)	194
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	288
PkrI	GCNGC	3 cut(s)	31, 526, 536
PleI	GAGTC	2 cut(s)	21, 468
PmaCI	CACGTG	1 cut(s)	350
PmlI	CACGTG	1 cut(s)	350
PpsI	GAGTC	2 cut(s)	21, 468
Ppu21I	YACGTR	1 cut(s)	350
PpuMI	RGGWCCY	1 cut(s)	157
PshAI	GACNNNNGTC	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	157
Psp6I	CCWGG	3 cut(s)	193, 544, 621
PspCI	CACGTG	1 cut(s)	350
PspFI	CCCAGC	1 cut(s)	586
PspGI	CCWGG	3 cut(s)	193, 544, 621
PspN4I	GGNNCC	2 cut(s)	159, 507
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	2 cut(s)	360, 646
RseI	CAYNNNNRTG	1 cut(s)	348
SalI	GTCGAC	1 cut(s)	235
SaqAI	TTAA	5 cut(s)	50, 62, 138, 258, 275
SatI	GCNGC	3 cut(s)	30, 525, 535
Sau3AI	GATC	3 cut(s)	76, 360, 646
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	2 cut(s)	22, 468
ScrFI	CCNGG	3 cut(s)	195, 546, 623
SetI	ASST	7 cut(s)	34, 119, 168, 267, 337, 352, 627
SfcI	CTRYAG	1 cut(s)	650
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	348
SsiI	CCGC	3 cut(s)	314, 512, 525
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	3 cut(s)	193, 544, 621
StyI	CCWWGG	1 cut(s)	632
TaaI	ACNGT	2 cut(s)	241, 571
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	2 cut(s)	236, 372
TauI	GCSGC	1 cut(s)	527
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	5 cut(s)	50, 62, 138, 258, 275
Tru9I	TTAA	5 cut(s)	50, 62, 138, 258, 275
TseFI	GTSAC	2 cut(s)	169, 241
TseI	GCWGC	2 cut(s)	29, 534
Tsp45I	GTSAC	2 cut(s)	169, 241
TspDTI	ATGAA	1 cut(s)	23
TspGWI	ACGGA	3 cut(s)	290, 336, 371
VpaK11BI	GGWCC	1 cut(s)	157
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.