RLG00000017504

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000366
Physical Location & Seq
Forward (+)
17629721 .. 17630540
820 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017504

Sequence Viewer

Length: 699 bp
ATGATGAAAGGTGCTCATTTCCCTACCGCTGCTGCTTTTTCCCTATTGGCATTGGCAACCTTCCACCTTGTATCTGCCTCTGATCCTAGTCCTCTTCAAGATTTCTGTGTAGCACTTAAAACCACCCAAACTGCTGCTTCTGCTGTGTTTGTGAATGGGAAATTCTGCAAGGACGCAAAGCTTGCAACAGCAGATGATTTCTTCTTTTCCGGGCTCCAGATTCTCCGAAACACATCAAATCCGGTTGGTTCTAATGTCACTGCAGTTAATGTGGAGCAAATAGCAGGGCTGAACACTCTTGGGATATCCCTGGCTCGCATAGACTATGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTCGGGCCACGGAAATTCTTATAGTCATGGAAGGCACTCTATACGTTGGCTTCGTCACATCTAACCCTGACAACCGCCTCTTCACCAAAGTGTTGTGCAAGGGAGATGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAATTCAACATCGGAGAGGTTAACGCCGTAGCCATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATTACCATAGCCAATGCAGTTTTCGGCTCCAACCCTCCAATCAACCCTGATGTTCTCAGCAAGGCCTTCCAAGTTGACAACAATATCGTTCAGTATCTCCAGAAACAGTTCTGGTACGACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

233

Amino Acids

24.85

Weight (kDa)

6.17

Isoelectric Point (pI)

23.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 75 - 220 6.2e-54 Cupin
Cupin_2 PF07883 107 - 180 2.4e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 545
AciI CCGC 4 cut(s) 27, 339, 439, 543
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 2 cut(s) 161, 378
AfaI GTAC 1 cut(s) 686
AfiI CCNNNNNNNGG 3 cut(s) 338, 366, 367
AgsI TTSAA 2 cut(s) 98, 511
AjnI CCWGG 2 cut(s) 309, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AleI CACNNNNGTG 1 cut(s) 452
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 2 cut(s) 369, 633
ApeKI GCWGC 4 cut(s) 29, 32, 134, 552
ApoI RAATTY 2 cut(s) 161, 378
Asp700I GAANNNNTTC 1 cut(s) 677
AspS9I GGNCC 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 366
BanII GRGCYC 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 472
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 4 cut(s) 16, 19, 121, 564
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 2 cut(s) 311, 564
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 5 cut(s) 30, 33, 135, 543, 553
BlsI GCNGC 5 cut(s) 31, 34, 136, 544, 554
Bme1390I CCNGG 3 cut(s) 211, 311, 564
BmeT110I CYCGRG 1 cut(s) 366
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 215, 598
BmrFI CCNGG 3 cut(s) 211, 311, 564
BmrI ACTGGG 1 cut(s) 479
BmuI ACTGGG 1 cut(s) 479
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 2 cut(s) 200, 653
BpuMI CCSGG 1 cut(s) 211
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 3 cut(s) 309, 365, 372
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 366, 367
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 537
BseBI CCWGG 2 cut(s) 311, 564
BseDI CCNNGG 3 cut(s) 309, 365, 372
BseLI CCNNNNNNNGG 3 cut(s) 338, 366, 367
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 640
BseNI ACTGG 1 cut(s) 485
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 4 cut(s) 16, 19, 121, 564
BshFI GGCC 2 cut(s) 371, 635
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 2 cut(s) 210, 242
BslI CCNNNNNNNGG 3 cut(s) 338, 366, 367
BsmAI GTCTC 1 cut(s) 497
BsnI GGCC 2 cut(s) 371, 635
Bso31I GGTCTC 1 cut(s) 497
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 16, 216
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 4 cut(s) 27, 339, 439, 543
BspANI GGCC 2 cut(s) 371, 635
BspCNI CTCAG 1 cut(s) 639
BspLI GGNNCC 2 cut(s) 215, 598
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 497
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 309, 365, 372
BssMI GATC 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 311, 564
Bst4CI ACNGT 1 cut(s) 678
Bst6I CTCTTC 2 cut(s) 99, 449
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 183, 316
BstDEI CTNAG 2 cut(s) 548, 626
BstDSI CCRYGG 1 cut(s) 372
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 3 cut(s) 140, 182, 542
BstNI CCWGG 2 cut(s) 311, 564
BstSCI CCNGG 3 cut(s) 209, 309, 562
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 4 cut(s) 16, 19, 121, 564
BstV2I GAAGAC 1 cut(s) 472
BsuRI GGCC 2 cut(s) 371, 635
BtgI CCRYGG 1 cut(s) 372
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 2 cut(s) 183, 316
Cfr13I GGNCC 1 cut(s) 369
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 685
CviAII CATG 1 cut(s) 391
CviQI GTAC 1 cut(s) 685
DdeI CTNAG 2 cut(s) 548, 626
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eam1104I CTCTTC 2 cut(s) 99, 449
EarI CTCTTC 2 cut(s) 99, 449
EciI GGCGGA 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 497
Eco32I GATATC 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 366
EcoRII CCWGG 2 cut(s) 309, 562
EcoRV GATATC 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 1 cut(s) 394
FaiI YATR 6 cut(s) 320, 327, 386, 392, 406, 578
FatI CATG 1 cut(s) 390
Fnu4HI GCNGC 5 cut(s) 30, 33, 135, 543, 553
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 5 cut(s) 30, 33, 135, 543, 553
FspBI CTAG 1 cut(s) 87
GluI GCNGC 5 cut(s) 30, 33, 135, 543, 553
GsuI CTGGAG 2 cut(s) 200, 653
HaeIII GGCC 2 cut(s) 371, 635
HapII CCGG 2 cut(s) 210, 242
HgaI GACGC 1 cut(s) 182
Hin1II CATG 1 cut(s) 394
HincII GTYRAC 2 cut(s) 526, 646
HindII GTYRAC 2 cut(s) 526, 646
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 2 cut(s) 220, 559
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 2 cut(s) 210, 242
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 526, 646
Hpy188I TCNGA 3 cut(s) 82, 227, 518
Hpy188III TCNNGA 3 cut(s) 98, 217, 670
Hpy8I GTNNAC 2 cut(s) 526, 646
HpyAV CCTTC 3 cut(s) 70, 389, 646
HpyCH4III ACNGT 1 cut(s) 678
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 6 cut(s) 168, 185, 263, 329, 462, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 182, 542
HpyF3I CTNAG 2 cut(s) 548, 626
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 3 cut(s) 219, 274, 602
Lsp1109I GCAGC 4 cut(s) 16, 19, 121, 564
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 256, 418
MalI GATC 1 cut(s) 84
MbiI CCGCTC 1 cut(s) 545
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 86, 193, 436, 472
MhlI GDGCHC 2 cut(s) 16, 216
MluCI AATT 4 cut(s) 161, 378, 506, 694
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 8 cut(s) 88, 102, 360, 363, 375, 452, 514, 615
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 4 cut(s) 117, 267, 525, 697
MslI CAYNNNNRTG 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 210, 242
MspR9I CCNGG 3 cut(s) 211, 311, 564
MvaI CCWGG 2 cut(s) 311, 564
MwoI GCNNNNNNNGC 3 cut(s) 140, 182, 542
NciI CCSGG 1 cut(s) 211
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 394
NlaIV GGNNCC 2 cut(s) 215, 598
NmuCI GTSAC 2 cut(s) 256, 418
OliI CACNNNNGTG 1 cut(s) 452
PceI AGGCCT 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 2 cut(s) 220, 559
PkrI GCNGC 5 cut(s) 31, 34, 136, 544, 554
Psp6I CCWGG 2 cut(s) 309, 562
PspGI CCWGG 2 cut(s) 309, 562
PspN4I GGNNCC 2 cut(s) 215, 598
PspPI GGNCC 1 cut(s) 369
PstI CTGCAG 1 cut(s) 265
RsaI GTAC 1 cut(s) 686
RsaNI GTAC 1 cut(s) 685
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 4 cut(s) 117, 267, 525, 697
SatI GCNGC 5 cut(s) 30, 33, 135, 543, 553
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 1 cut(s) 369
ScrFI CCNGG 3 cut(s) 211, 311, 564
SduI GDGCHC 2 cut(s) 16, 216
SetI ASST 7 cut(s) 13, 62, 69, 183, 411, 525, 568
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 452
Sse9I AATT 4 cut(s) 161, 378, 506, 694
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 4 cut(s) 27, 339, 439, 543
SspMI CTAG 1 cut(s) 87
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 3 cut(s) 209, 309, 562
TaaI ACNGT 1 cut(s) 678
TaiI ACGT 1 cut(s) 411
TasI AATT 4 cut(s) 161, 378, 506, 694
TauI GCSGC 1 cut(s) 545
TfiI GAWTC 2 cut(s) 220, 559
Tru1I TTAA 4 cut(s) 117, 267, 525, 697
Tru9I TTAA 4 cut(s) 117, 267, 525, 697
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 2 cut(s) 256, 418
TseI GCWGC 4 cut(s) 29, 32, 134, 552
Tsp45I GTSAC 2 cut(s) 256, 418
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 1 cut(s) 265
XapI RAATTY 2 cut(s) 161, 378
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.