Rw1G021930

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000366
Physical Location & Seq
Forward (+)
46468644 .. 46469584
941 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021930.1

Sequence Viewer

Length: 690 bp
ATGAAAGGTGCTCATTTCCCTACAGCTATTGCTTTTGCCCTATTGGCATTGGCAACCTTCCACCTTGTATCTGCCTCTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACACAAACTATTGTTTCTGCCGTGTTTGTGAATGGAAAATTCTGCAGGGACCCAAAGCTTGCAACAGCAGATGATTTCTTCTTTTCCGGCCTCCGGATTCCTGGAAACACATCAAATCCGCTAGGTTCCAAAGTCACCCCAGCTAATGTGGAGCAAATAGCAGGGCTGAACACTCTTGGGATATCCCTGGCTCGCGTAGACTATGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTAGAGCCACGGAAGTCCTTACGGTCATGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCGACAACCGCCTCTTCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAGTTCAACATCGGAAAGGTTCAAGCCGTAGTCATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATCACCATAGCCAATGCAGTGTTCGGCTCCAACCCTCCAATCAACGTTGATGTTCTCACCAAGGCCTTCCAAGTTGACAACAATGTCGTTCAGTATCTCCAGAAACAGTTCTGGTATGACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

229

Amino Acids

24.64

Weight (kDa)

6.95

Isoelectric Point (pI)

16.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 70 - 218 1.9e-53 Cupin
Cupin_2 PF07883 105 - 177 5.2e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 644
AccBSI CCGCTC 1 cut(s) 536
AccI GTMKAC 1 cut(s) 318
AccII CGCG 1 cut(s) 315
AccIII TCCGGA 1 cut(s) 213
AciI CCGC 4 cut(s) 239, 336, 430, 534
AclI AACGTT 1 cut(s) 606
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 2 cut(s) 213, 335
AgsI TTSAA 2 cut(s) 502, 518
AjnI CCWGG 3 cut(s) 220, 306, 553
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 3 cut(s) 26, 178, 263
AluI AGCT 3 cut(s) 26, 178, 263
Alw21I GWGCWC 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 213
AoxI GGCC 2 cut(s) 208, 624
ApeKI GCWGC 1 cut(s) 543
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 4 cut(s) 247, 430, 556, 610
AvaII GGWCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 555
BceAI ACGGC 2 cut(s) 125, 506
BciT130I CCWGG 3 cut(s) 222, 308, 555
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 3 cut(s) 84, 242, 363
BfmI CTRYAG 2 cut(s) 21, 163
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 2 cut(s) 534, 544
BlsI GCNGC 2 cut(s) 535, 545
Bme1390I CCNGG 3 cut(s) 222, 308, 555
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 4 cut(s) 170, 171, 247, 589
BmrFI CCNGG 3 cut(s) 222, 308, 555
BmrI ACTGGG 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 463
BpmI CTGGAG 1 cut(s) 644
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 3 cut(s) 306, 369, 621
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 335
Bse1I ACTGG 2 cut(s) 476, 496
Bse3DI GCAATG 1 cut(s) 528
BseAI TCCGGA 1 cut(s) 213
BseBI CCWGG 3 cut(s) 222, 308, 555
BseDI CCNNGG 3 cut(s) 306, 369, 621
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 2 cut(s) 213, 335
BseMI GCAATG 1 cut(s) 528
BseNI ACTGG 2 cut(s) 476, 496
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 1 cut(s) 555
BseYI CCCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 210, 626
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 207, 214
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 213, 335
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 210, 626
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 4 cut(s) 239, 336, 430, 534
BspANI GGCC 2 cut(s) 210, 626
BspEI TCCGGA 1 cut(s) 213
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 4 cut(s) 170, 171, 247, 589
BspMAI CTGCAG 1 cut(s) 167
BspPI GGATC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 488
BsrBI CCGCTC 1 cut(s) 536
BsrDI GCAATG 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 2 cut(s) 476, 496
BssECI CCNNGG 3 cut(s) 306, 369, 621
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 3 cut(s) 222, 308, 555
Bst4CI ACNGT 2 cut(s) 385, 669
Bst6I CTCTTC 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 180, 313
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 419
BstFNI CGCG 1 cut(s) 315
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 3 cut(s) 222, 308, 555
BstSCI CCNGG 3 cut(s) 220, 306, 553
BstSFI CTRYAG 2 cut(s) 21, 163
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 555
BstV2I GAAGAC 1 cut(s) 463
BsuRI GGCC 2 cut(s) 210, 626
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 180, 313
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 451
CviAII CATG 1 cut(s) 388
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 539
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DrdI GACNNNNNNGTC 1 cut(s) 644
DseDI GACNNNNNNGTC 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
EciI GGCGGA 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 626
Eco31I GGTCTC 1 cut(s) 488
Eco32I GATATC 1 cut(s) 303
Eco47I GGWCC 1 cut(s) 169
EcoO109I RGGNCCY 1 cut(s) 169
EcoRII CCWGG 3 cut(s) 220, 306, 553
EcoRV GATATC 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 1 cut(s) 391
FaiI YATR 4 cut(s) 324, 389, 569, 678
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 387
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 534, 544
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 2 cut(s) 534, 544
FspBI CTAG 3 cut(s) 84, 242, 363
GluI GCNGC 2 cut(s) 534, 544
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 644
HaeIII GGCC 2 cut(s) 210, 626
HapII CCGG 2 cut(s) 207, 214
Hin1II CATG 1 cut(s) 391
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 217, 550
HpaII CCGG 2 cut(s) 207, 214
HphI GGTGA 4 cut(s) 247, 430, 556, 610
Hpy166II GTNNAC 2 cut(s) 319, 637
Hpy188I TCNGA 3 cut(s) 79, 424, 509
Hpy188III TCNNGA 2 cut(s) 214, 661
Hpy8I GTNNAC 2 cut(s) 319, 637
HpyAV CCTTC 3 cut(s) 67, 386, 637
HpyCH4III ACNGT 2 cut(s) 385, 669
HpyCH4IV ACGT 2 cut(s) 405, 606
HpyCH4V TGCA 4 cut(s) 165, 182, 326, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 405, 606
Hsp92II CATG 1 cut(s) 391
KflI GGGWCCC 1 cut(s) 169
Kpn2I TCCGGA 1 cut(s) 213
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 271, 593
Lsp1109I GCAGC 1 cut(s) 555
MaeI CTAG 3 cut(s) 84, 242, 363
MaeII ACGT 2 cut(s) 405, 606
MaeIII GTNAC 2 cut(s) 253, 415
MalI GATC 1 cut(s) 81
MbiI CCGCTC 1 cut(s) 536
MboI GATC 1 cut(s) 79
MboII GAAGA 3 cut(s) 190, 427, 463
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 2 cut(s) 158, 685
MmeI TCCRAC 2 cut(s) 447, 615
MnlI CCTC 7 cut(s) 85, 99, 221, 357, 360, 443, 606
MroI TCCGGA 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 668
MseI TTAA 2 cut(s) 114, 688
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 2 cut(s) 207, 214
MspR9I CCNGG 3 cut(s) 222, 308, 555
MvaI CCWGG 3 cut(s) 222, 308, 555
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 4 cut(s) 170, 171, 247, 589
NmuCI GTSAC 2 cut(s) 253, 415
OliI CACNNNNGTG 1 cut(s) 443
PceI AGGCCT 1 cut(s) 626
PcsI WCGNNNNNNNCGW 2 cut(s) 411, 420
PdmI GAANNNNTTC 1 cut(s) 668
PfeI GAWTC 2 cut(s) 217, 550
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 2 cut(s) 535, 545
PpuMI RGGWCCY 1 cut(s) 169
Psp1406I AACGTT 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 169
Psp6I CCWGG 3 cut(s) 220, 306, 553
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 3 cut(s) 220, 306, 553
PspN4I GGNNCC 4 cut(s) 170, 171, 247, 589
PspPI GGNCC 1 cut(s) 169
PspPPI RGGWCCY 1 cut(s) 169
PstI CTGCAG 1 cut(s) 167
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 2 cut(s) 114, 688
SatI GCNGC 2 cut(s) 534, 544
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 3 cut(s) 222, 308, 555
SduI GDGCHC 1 cut(s) 13
SfcI CTRYAG 2 cut(s) 21, 163
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 2 cut(s) 158, 685
SseBI AGGCCT 1 cut(s) 626
SsiI CCGC 4 cut(s) 239, 336, 430, 534
SspMI CTAG 3 cut(s) 84, 242, 363
StuI AGGCCT 1 cut(s) 626
StyD4I CCNGG 3 cut(s) 220, 306, 553
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 385, 669
TaiI ACGT 2 cut(s) 408, 609
TasI AATT 2 cut(s) 158, 685
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 2 cut(s) 217, 550
Tru1I TTAA 2 cut(s) 114, 688
Tru9I TTAA 2 cut(s) 114, 688
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 253, 415
TseI GCWGC 1 cut(s) 543
Tsp45I GTSAC 2 cut(s) 253, 415
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 3 cut(s) 84, 242, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.