Rorug01G0240100

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000366
Physical Location & Seq
Forward (+)
34561608 .. 34562686
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0240100.1

Sequence Viewer

Length: 513 bp
ATGAGAAAGATCAGAGGAATCAAGCTCGGAAAACGACTCTGCCGGGTCACCCGATGGTTCTTCTTCCGAAAACCCACGACCCGACCCGGATACCACAGGCTGAGCCCGCCTTCATCTCCCCCGTGCAAGTACAAGTCGATTGCCAAGCTACTCACTTGGGGTCGCCAGCTGAGTACCGGAGCTAAATCTCTATGTTGCGGTAAACCCGGGTCGGGTTATATGCAGCTGGGTCAGAACCCCGTTGAGCAAACCAAGCCGGTGACGGTCCCCAAGGGACACCTGGCGGTCTACGTGGGTCAAAAAGACGGCGACTTTCACCGTGTTTTGGTGCCTGTGATTTACTTTAACCACCCACTCTTCGGTCAGCTTCTGAAAGAGGCCGAGCAAGAATACGGGTTCACCCACCCGGGTGGAATCACCATACCCTGTCCGATTTCGGACTTTGAGAGCGTCAAGACCCGGATCGCCGCCGGGTCGGGTCACCGCAGGCTGATCTGGAAACGCAACTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

170

Amino Acids

19.15

Weight (kDa)

10.38

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 81 - 152 7.2e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 288
AciI CCGC 5 cut(s) 107, 198, 284, 468, 484
AclWI GGATC 1 cut(s) 470
AfaI GTAC 2 cut(s) 131, 175
AfiI CCNNNNNNNGG 3 cut(s) 212, 325, 359
AjnI CCWGG 1 cut(s) 279
AleI CACNNNNGTG 1 cut(s) 408
AluBI AGCT 6 cut(s) 25, 148, 169, 182, 226, 367
AluI AGCT 6 cut(s) 25, 148, 169, 182, 226, 367
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 370
Ama87I CYCGRG 2 cut(s) 206, 406
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 223
AspS9I GGNCC 1 cut(s) 265
AsuC2I CCSGG 8 cut(s) 44, 87, 207, 208, 407, 408, 460, 472
AsuHPI GGTGA 6 cut(s) 40, 271, 308, 391, 409, 473
AvaI CYCGRG 2 cut(s) 206, 406
AvaII GGWCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 48
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 281
BciVI GTATCC 1 cut(s) 83
BcnI CCSGG 8 cut(s) 44, 87, 207, 208, 407, 408, 460, 472
BfuI GTATCC 1 cut(s) 83
BisI GCNGC 2 cut(s) 224, 468
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 2 cut(s) 225, 469
Bme1390I CCNGG 9 cut(s) 44, 87, 207, 208, 281, 407, 408, 460, 472
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 2 cut(s) 206, 406
BmgT120I GGNCC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 267, 330
BmrFI CCNGG 9 cut(s) 44, 87, 207, 208, 281, 407, 408, 460, 472
Bpu1102I GCTNAGC 1 cut(s) 101
BpuMI CCSGG 8 cut(s) 44, 87, 207, 208, 407, 408, 460, 472
BsaAI YACGTR 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 206, 270, 406
BsaWI WCCGGW 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 325, 359
Bse118I RCCGGY 1 cut(s) 256
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 3 cut(s) 206, 270, 406
BseLI CCNNNNNNNGG 3 cut(s) 212, 325, 359
BseMII CTCAG 2 cut(s) 92, 161
BseXI GCAGC 1 cut(s) 235
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 1 cut(s) 328
BsiHKCI CYCGRG 2 cut(s) 206, 406
BsiSI CCGG 8 cut(s) 43, 87, 177, 207, 257, 407, 460, 471
BslFI GGGAC 2 cut(s) 251, 288
BslI CCNNNNNNNGG 3 cut(s) 212, 325, 359
BsmFI GGGAC 2 cut(s) 251, 288
BsnI GGCC 1 cut(s) 380
BsoBI CYCGRG 2 cut(s) 206, 406
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 9, 462, 492
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 5 cut(s) 107, 198, 284, 468, 484
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 2 cut(s) 93, 162
BspHI TCATGA 1 cut(s) 509
BspLI GGNNCC 2 cut(s) 267, 330
BspPI GGATC 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 206, 270, 406
BssMI GATC 3 cut(s) 9, 462, 492
BssT1I CCWWGG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 2 cut(s) 265, 320
Bst6I CTCTTC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 292
BstC8I GCNNGC 3 cut(s) 107, 167, 488
BstDEI CTNAG 2 cut(s) 101, 170
BstEII GGTNACC 2 cut(s) 46, 479
BstKTI GATC 3 cut(s) 12, 465, 495
BstMBI GATC 3 cut(s) 9, 462, 492
BstMWI GCNNNNNNNGC 2 cut(s) 106, 253
BstNI CCWGG 1 cut(s) 281
BstPI GGTNACC 2 cut(s) 46, 479
BstSCI CCNGG 9 cut(s) 42, 85, 205, 206, 279, 405, 406, 458, 470
BstV1I GCAGC 1 cut(s) 235
BstXI CCANNNNNNTGG 1 cut(s) 410
BsuI GTATCC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 380
Cac8I GCNNGC 3 cut(s) 107, 167, 488
CaiI CAGNNNCTG 1 cut(s) 370
CciI TCATGA 1 cut(s) 509
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 265
Cfr9I CCCGGG 2 cut(s) 206, 406
CseI GACGC 1 cut(s) 439
Csp6I GTAC 2 cut(s) 130, 174
CviAII CATG 1 cut(s) 510
CviQI GTAC 2 cut(s) 130, 174
DdeI CTNAG 2 cut(s) 101, 170
DpnI GATC 3 cut(s) 11, 464, 494
DpnII GATC 3 cut(s) 9, 462, 492
Eam1104I CTCTTC 1 cut(s) 362
EarI CTCTTC 1 cut(s) 362
Eco130I CCWWGG 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 265
Eco88I CYCGRG 2 cut(s) 206, 406
Eco91I GGTNACC 2 cut(s) 46, 479
EcoO65I GGTNACC 2 cut(s) 46, 479
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 270
EcoT38I GRGCYC 1 cut(s) 107
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 513
FaiI YATR 5 cut(s) 193, 219, 221, 422, 511
FaqI GGGAC 2 cut(s) 251, 288
FatI CATG 1 cut(s) 509
FauI CCCGC 1 cut(s) 114
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 224, 468
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 224, 468
GluI GCNGC 2 cut(s) 224, 468
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 1 cut(s) 380
HapII CCGG 8 cut(s) 43, 87, 177, 207, 257, 407, 460, 471
HgaI GACGC 1 cut(s) 439
Hin1II CATG 1 cut(s) 513
HinfI GANTC 3 cut(s) 18, 36, 414
HpaII CCGG 8 cut(s) 43, 87, 177, 207, 257, 407, 460, 471
HphI GGTGA 6 cut(s) 40, 271, 308, 391, 409, 473
Hpy166II GTNNAC 3 cut(s) 203, 289, 399
Hpy188I TCNGA 7 cut(s) 14, 29, 68, 234, 372, 432, 439
Hpy188III TCNNGA 3 cut(s) 454, 496, 510
Hpy8I GTNNAC 3 cut(s) 203, 289, 399
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 2 cut(s) 265, 320
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 126, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 253
HpyF3I CTNAG 2 cut(s) 101, 170
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 513
Kzo9I GATC 3 cut(s) 9, 462, 492
LmnI GCTCC 1 cut(s) 179
Lsp1109I GCAGC 1 cut(s) 235
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 46, 259, 479
MalI GATC 3 cut(s) 11, 464, 494
MboI GATC 3 cut(s) 9, 462, 492
MboII GAAGA 3 cut(s) 52, 55, 349
MhlI GDGCHC 1 cut(s) 107
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 2 cut(s) 8, 370
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 169, 226
MspI CCGG 8 cut(s) 43, 87, 177, 207, 257, 407, 460, 471
MspR9I CCNGG 9 cut(s) 44, 87, 207, 208, 281, 407, 408, 460, 472
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 106, 253
NciI CCSGG 8 cut(s) 44, 87, 207, 208, 407, 408, 460, 472
NdeII GATC 3 cut(s) 9, 462, 492
NlaIII CATG 1 cut(s) 513
NlaIV GGNNCC 2 cut(s) 267, 330
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 3 cut(s) 46, 259, 479
OliI CACNNNNGTG 1 cut(s) 408
PagI TCATGA 1 cut(s) 509
PfeI GAWTC 2 cut(s) 18, 414
PkrI GCNGC 2 cut(s) 225, 469
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 279
PspEI GGTNACC 2 cut(s) 46, 479
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 267, 330
PspPI GGNCC 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 370
PvuII CAGCTG 2 cut(s) 169, 226
RsaI GTAC 2 cut(s) 131, 175
RsaNI GTAC 2 cut(s) 130, 174
RseI CAYNNNNRTG 1 cut(s) 408
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 2 cut(s) 224, 468
Sau3AI GATC 3 cut(s) 9, 462, 492
Sau96I GGNCC 1 cut(s) 265
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 9 cut(s) 44, 87, 207, 208, 281, 407, 408, 460, 472
SduI GDGCHC 1 cut(s) 107
SetI ASST 8 cut(s) 27, 150, 171, 184, 228, 282, 294, 369
SinI GGWCC 1 cut(s) 265
SmaI CCCGGG 2 cut(s) 208, 408
SmiMI CAYNNNNRTG 1 cut(s) 408
SsiI CCGC 5 cut(s) 107, 198, 284, 468, 484
StyD4I CCNGG 9 cut(s) 42, 85, 205, 206, 279, 405, 406, 458, 470
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 265, 320
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 137
TaqII GACCGA 1 cut(s) 350
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 470
TfiI GAWTC 2 cut(s) 18, 414
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TseFI GTSAC 3 cut(s) 46, 259, 479
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 3 cut(s) 46, 259, 479
TspDTI ATGAA 1 cut(s) 102
TspMI CCCGGG 2 cut(s) 206, 406
VpaK11BI GGWCC 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 277
XmaI CCCGGG 2 cut(s) 206, 406
XmiI GTMKAC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.