Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000366

Physical Location & Seq

Genomic Coordinates Reverse (-)

1780938 .. 1782007

Gene Structure 1070 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAAGGGTTTCTTCGCTTTCTTGTAGCGAAAGCCATCTTATTGGCTTTAGCATCTTCATTTGTATCTTGTTACGACCCAAGTCCTCTTCAGGACTTTTGTGTTGCCGTCGATGACGCTAGTGGTGTTTTCGTGAATGGAAAATTCTGCAAAGACCCAAAATACGTGAAAGCTGAAGACTTTTTTACTTCCGGACTAAACATCGCCGGAAACACAATAAACCGCGTTGGCTCCAACGTTACAAACGTTAACGTTGACAAAATCCCTGGACTCAACACCCTCGGAGTGTCTCTTGTCCGAATTGACTTTGCCCCGGGAGGTCAAAACCCGCCACACACGCACCCACGAGCCACTGAGATCCTCGTGGTTGTCGAAGGAACACTCTTAGTCGGTTTTGTAACATCGAACCAAGACAACAACAGATTGTTCTCAAAGGTTCTTTACCCGGGAGACGTTTTCGTGTTTCCCATAGGAATGATACATTTTCAAGTGAACGTTGGGAGGACGAACGCAGTTGCGTTTGCTGGTCTTGGTAGCCAAAATCCCGGTACAATCACAATCGCAGACGCCGTTTTTGGATCGAAGCCTTCGATTATGCCGGAGATTTTAGCAAAAGCGTTTCAGCTGGATGTGAACGTGGTTAAATATCTCGAGGCAAGATTTTCTTCCAATTATGATCGTCATTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0016020 GO:0030312 GO:0031012 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

229

Amino Acids

24.74

Weight (kDa)

6.41

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	65 - 215	1e-55	Cupin
Cupin_2	PF07883	101 - 172	4.1e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca	FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica	MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica	Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis	pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis	RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata	RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora	Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii	Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa	Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha	Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana	Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	2 cut(s)	223, 329
AclI	AACGTT	4 cut(s)	237, 246, 252, 495
AclWI	GGATC	2 cut(s)	352, 586
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	2 cut(s)	74, 195
AcyI	GRCGYC	1 cut(s)	567
AfaI	GTAC	1 cut(s)	550
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	265
AluBI	AGCT	2 cut(s)	173, 625
AluI	AGCT	2 cut(s)	173, 625
Alw26I	GTCTC	2 cut(s)	294, 444
AlwI	GGATC	2 cut(s)	352, 586
Ama87I	CYCGRG	3 cut(s)	313, 445, 650
Aor13HI	TCCGGA	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	143
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuC2I	CCSGG	5 cut(s)	314, 315, 446, 447, 546
AvaI	CYCGRG	3 cut(s)	313, 445, 650
BauI	CACGAG	2 cut(s)	345, 362
BbsI	GAAGAC	1 cut(s)	183
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	2 cut(s)	92, 554
BciT130I	CCWGG	1 cut(s)	267
BcnI	CCSGG	5 cut(s)	314, 315, 446, 447, 546
BcoDI	GTCTC	2 cut(s)	294, 444
BfaI	CTAG	1 cut(s)	120
Bme1390I	CCNGG	6 cut(s)	267, 314, 315, 446, 447, 546
BmeT110I	CYCGRG	3 cut(s)	313, 445, 650
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	6 cut(s)	267, 314, 315, 446, 447, 546
BmsI	GCATC	1 cut(s)	62
BoxI	GACNNNNGTC	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	183
BpuMI	CCSGG	5 cut(s)	314, 315, 446, 447, 546
BsaAI	YACGTR	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	567
BsaJI	CCNNGG	5 cut(s)	265, 280, 312, 313, 445
BsaWI	WCCGGW	1 cut(s)	191
BseAI	TCCGGA	1 cut(s)	191
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	5 cut(s)	265, 280, 312, 313, 445
BseGI	GGATG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	225
BsiHKCI	CYCGRG	3 cut(s)	313, 445, 650
BsiSI	CCGG	6 cut(s)	192, 207, 314, 446, 546, 599
BsmAI	GTCTC	2 cut(s)	294, 444
BsmBI	CGTCTC	1 cut(s)	444
BsoBI	CYCGRG	3 cut(s)	313, 445, 650
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	357, 578, 676
BspACI	CCGC	2 cut(s)	223, 329
BspCNI	CTCAG	1 cut(s)	346
BspEI	TCCGGA	1 cut(s)	191
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	232
BspPI	GGATC	2 cut(s)	352, 586
BssECI	CCNNGG	5 cut(s)	265, 280, 312, 313, 445
BssMI	GATC	3 cut(s)	357, 578, 676
BssNI	GRCGYC	1 cut(s)	567
BssSI	CACGAG	2 cut(s)	345, 362
Bst2BI	CACGAG	2 cut(s)	345, 362
Bst2UI	CCWGG	1 cut(s)	267
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	567
BstBAI	YACGTR	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	354, 385
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	3 cut(s)	360, 581, 679
BstMAI	GTCTC	2 cut(s)	294, 444
BstMBI	GATC	3 cut(s)	357, 578, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	267
BstPAI	GACNNNNGTC	1 cut(s)	81
BstSCI	CCNGG	6 cut(s)	265, 312, 313, 444, 445, 544
BstUI	CGCG	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	183
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	1 cut(s)	351
Cfr9I	CCCGGG	2 cut(s)	313, 445
CseI	GACGC	2 cut(s)	125, 575
Csp6I	GTAC	1 cut(s)	549
CviJI	RGCY	8 cut(s)	35, 47, 173, 231, 350, 537, 586, 625
CviKI_1	RGCY	8 cut(s)	35, 47, 173, 231, 350, 537, 586, 625
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	2 cut(s)	354, 385
DpnI	GATC	3 cut(s)	359, 580, 678
DpnII	GATC	3 cut(s)	357, 578, 676
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco57I	CTGAAG	2 cut(s)	74, 195
Eco88I	CYCGRG	3 cut(s)	313, 445, 650
EcoRII	CCWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	444
FaiI	YATR	3 cut(s)	470, 596, 675
FalI	AAGNNNNNCTT	3 cut(s)	29, 649, 681
FauI	CCCGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	641
FspBI	CTAG	1 cut(s)	120
HapII	CCGG	6 cut(s)	192, 207, 314, 446, 546, 599
HgaI	GACGC	2 cut(s)	125, 575
Hin1I	GRCGYC	1 cut(s)	567
HincII	GTYRAC	2 cut(s)	250, 256
HindII	GTYRAC	2 cut(s)	250, 256
HinfI	GANTC	1 cut(s)	270
HpaI	GTTAAC	1 cut(s)	250
HpaII	CCGG	6 cut(s)	192, 207, 314, 446, 546, 599
Hpy166II	GTNNAC	4 cut(s)	250, 256, 493, 634
Hpy188I	TCNGA	2 cut(s)	284, 299
Hpy188III	TCNNGA	4 cut(s)	92, 133, 192, 650
Hpy8I	GTNNAC	4 cut(s)	250, 256, 493, 634
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	368, 597
HpyCH4IV	ACGT	7 cut(s)	165, 237, 246, 252, 453, 495, 636
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	2 cut(s)	354, 385
HpySE526I	ACGT	7 cut(s)	165, 237, 246, 252, 453, 495, 636
Hsp92I	GRCGYC	1 cut(s)	567
Kpn2I	TCCGGA	1 cut(s)	191
KspAI	GTTAAC	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	357, 578, 676
LmnI	GCTCC	1 cut(s)	236
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	7 cut(s)	165, 237, 246, 252, 453, 495, 636
MaeIII	GTNAC	3 cut(s)	71, 238, 397
MalI	GATC	3 cut(s)	359, 580, 678
MboI	GATC	3 cut(s)	357, 578, 676
MboII	GAAGA	5 cut(s)	5, 48, 80, 188, 657
MflI	RGATCY	1 cut(s)	357
MluCI	AATT	3 cut(s)	143, 300, 670
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	96, 290, 311, 371, 495, 646
MroI	TCCGGA	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	3 cut(s)	249, 642, 688
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	6 cut(s)	192, 207, 314, 446, 546, 599
MspR9I	CCNGG	6 cut(s)	267, 314, 315, 446, 447, 546
MvaI	CCWGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	337
NciI	CCSGG	5 cut(s)	314, 315, 446, 447, 546
NdeII	GATC	3 cut(s)	357, 578, 676
NlaIV	GGNNCC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	650
PcsI	WCGNNNNNNNCGW	4 cut(s)	243, 369, 567, 587
PdmI	GAANNNNTTC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	81
Psp1406I	AACGTT	4 cut(s)	237, 246, 252, 495
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PspN4I	GGNNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	357
PvuII	CAGCTG	1 cut(s)	625
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	473
SaqAI	TTAA	3 cut(s)	249, 642, 688
Sau3AI	GATC	3 cut(s)	357, 578, 676
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	6 cut(s)	267, 314, 315, 446, 447, 546
SfaNI	GCATC	1 cut(s)	62
Sfr274I	CTCGAG	1 cut(s)	650
SlaI	CTCGAG	1 cut(s)	650
SmaI	CCCGGG	2 cut(s)	315, 447
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	3 cut(s)	143, 300, 670
SsiI	CCGC	2 cut(s)	223, 329
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	6 cut(s)	265, 312, 313, 444, 445, 544
TaiI	ACGT	7 cut(s)	168, 240, 249, 255, 456, 498, 639
TaqI	TCGA	6 cut(s)	111, 372, 404, 581, 590, 651
TasI	AATT	3 cut(s)	143, 300, 670
Tru1I	TTAA	3 cut(s)	249, 642, 688
Tru9I	TTAA	3 cut(s)	249, 642, 688
TscAI	CASTG	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	48
TspMI	CCCGGG	2 cut(s)	313, 445
TspRI	CASTG	1 cut(s)	358
XapI	RAATTY	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	650
XmaI	CCCGGG	2 cut(s)	313, 445
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.