RLG00000033537

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000366
Physical Location & Seq
Reverse (-)
28679825 .. 28681132
1308 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033537

Sequence Viewer

Length: 693 bp
ATGAAAGGAGTTCATTTGCCTATTGCTAATCTTGCCATATTTGCATTGGCAACCTTCCTCGTCTCTGCCTCAGACCCCGGTCCTCTACAGGACTTCTGCGTAGCCACCAATAGCTCACAGTTTCCCCAATTTCCTGGAGTGTTCGTGAATGGGAAGTTCTGCAAGGACCCAAAGCTTGCAACAGCAAATGATTTCTTCTTCTCTGGTCTCCAAAGTGCGAAACCCACGGCAAACGCCTTAGGTTTGACCGTGACAGCCGCAAACGTGGAGCAAATCCCTGGATTGAACATTCTTGGGATATCCCTAGCTCGCATAGATATTGCACCAAATGGCGGTCTAAATCCTCCCCACCACCACCCTTGTGCCTCTGACGTACTTCTAGTCTTGGAAGGCACTCTCTACGCTGGCTTCGTCACCTCCAATCCCGACAACAAGCTGATCAGCAAGGTCTTGAACAAGGGAGATGTATTTGTCATCCCTGCTGGTCTCATTCACTTCCAACTTAACATCGGACCTGTCAATGCTGTAGCAATTGCTGCTTTTAGCAGCCAGAACCCAGGAGTCATCACCATAGCCAATGCAGTTTTCGGGGCCGAGCCTCCTATCAATCCTGATGTTCTAAGCAAGGCGTTCCAAGTCGACAAAAAGCTCGTTCAGCATCTCCAGAAGCAGTTCGGGCACAAAAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

231

Amino Acids

24.18

Weight (kDa)

7.78

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 69 - 218 5.8e-48 Cupin
Cupin_2 PF07883 105 - 178 7.7e-06 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 639
AciI CCGC 2 cut(s) 258, 333
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 286, 454
AjnI CCWGG 3 cut(s) 133, 277, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 5 cut(s) 114, 175, 308, 436, 649
AluI AGCT 5 cut(s) 114, 175, 308, 436, 649
Alw26I GTCTC 3 cut(s) 67, 212, 491
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 536, 546
Asp700I GAANNNNTTC 1 cut(s) 671
AspS9I GGNCC 4 cut(s) 80, 166, 512, 591
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 406, 559
AvaII GGWCC 3 cut(s) 80, 166, 512
AxyI CCTNAGG 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 681
BbvI GCAGC 2 cut(s) 523, 558
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 3 cut(s) 135, 279, 558
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 3 cut(s) 67, 212, 491
BfaI CTAG 2 cut(s) 305, 380
BfmI CTRYAG 2 cut(s) 86, 525
BisI GCNGC 3 cut(s) 258, 537, 547
BlsI GCNGC 3 cut(s) 259, 538, 548
Bme1390I CCNGG 4 cut(s) 78, 135, 279, 558
Bme18I GGWCC 3 cut(s) 80, 166, 512
BmgT120I GGNCC 4 cut(s) 80, 166, 512, 591
BmiI GGNNCC 2 cut(s) 168, 592
BmrFI CCNGG 4 cut(s) 78, 135, 279, 558
BmsI GCATC 1 cut(s) 667
BoxI GACNNNNGTC 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 156, 647
BpuMI CCSGG 1 cut(s) 78
BsaI GGTCTC 2 cut(s) 212, 491
BsaJI CCNNGG 4 cut(s) 76, 225, 277, 556
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse21I CCTNAGG 1 cut(s) 238
BseBI CCWGG 3 cut(s) 135, 279, 558
BseDI CCNNGG 4 cut(s) 76, 225, 277, 556
BseGI GGATG 1 cut(s) 474
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 84
BseSI GKGCMC 1 cut(s) 681
BseXI GCAGC 2 cut(s) 523, 558
BshFI GGCC 1 cut(s) 593
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 3 cut(s) 67, 212, 491
BsmBI CGTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 593
Bso31I GGTCTC 2 cut(s) 212, 491
Bsp1286I GDGCHC 1 cut(s) 681
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 2 cut(s) 258, 333
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 168, 592
BspTNI GGTCTC 2 cut(s) 212, 491
BssECI CCNNGG 4 cut(s) 76, 225, 277, 556
BssMI GATC 1 cut(s) 438
Bst2UI CCWGG 3 cut(s) 135, 279, 558
Bst4CI ACNGT 2 cut(s) 120, 250
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 3 cut(s) 177, 310, 406
BstDEI CTNAG 3 cut(s) 70, 238, 620
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 474
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 3 cut(s) 67, 212, 491
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 5 cut(s) 32, 41, 536, 655, 676
BstNI CCWGG 3 cut(s) 135, 279, 558
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 4 cut(s) 76, 133, 277, 556
BstSFI CTRYAG 2 cut(s) 86, 525
BstSLI GKGCMC 1 cut(s) 681
BstV1I GCAGC 2 cut(s) 523, 558
BstXI CCANNNNNNTGG 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 238
BsuRI GGCC 1 cut(s) 593
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 474
Cac8I GCNNGC 3 cut(s) 177, 310, 406
Cfr13I GGNCC 4 cut(s) 80, 166, 512, 591
Csp6I GTAC 1 cut(s) 374
CspCI CAANNNNNGTGG 2 cut(s) 341, 376
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 3 cut(s) 70, 238, 620
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eco31I GGTCTC 2 cut(s) 212, 491
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 80, 166, 512
Eco81I CCTNAGG 1 cut(s) 238
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 3 cut(s) 133, 277, 556
EcoRV GATATC 1 cut(s) 300
Esp3I CGTCTC 1 cut(s) 67
FaiI YATR 3 cut(s) 38, 314, 572
FbaI TGATCA 1 cut(s) 438
FblI GTMKAC 1 cut(s) 639
Fnu4HI GCNGC 3 cut(s) 258, 537, 547
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 3 cut(s) 258, 537, 547
FspBI CTAG 2 cut(s) 305, 380
GluI GCNGC 3 cut(s) 258, 537, 547
GsuI CTGGAG 2 cut(s) 156, 647
HaeIII GGCC 1 cut(s) 593
HapII CCGG 1 cut(s) 78
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 561
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 406, 559
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 3 cut(s) 73, 370, 512
Hpy188III TCNNGA 5 cut(s) 145, 425, 451, 611, 664
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 2 cut(s) 64, 383
HpyCH4III ACNGT 2 cut(s) 120, 250
HpyCH4IV ACGT 2 cut(s) 264, 372
HpyCH4V TGCA 5 cut(s) 44, 162, 179, 323, 581
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 41, 536, 655, 676
HpyF3I CTNAG 3 cut(s) 70, 238, 620
HpySE526I ACGT 2 cut(s) 264, 372
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 523, 558
LweI GCATC 1 cut(s) 667
MaeI CTAG 2 cut(s) 305, 380
MaeII ACGT 2 cut(s) 264, 372
MaeIII GTNAC 2 cut(s) 250, 412
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 2 cut(s) 187, 190
MfeI CAATTG 1 cut(s) 531
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 3 cut(s) 128, 531, 688
MlyI GAGTC 1 cut(s) 570
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 7 cut(s) 68, 79, 93, 354, 376, 427, 609
MroXI GAANNNNTTC 1 cut(s) 671
MseI TTAA 2 cut(s) 504, 691
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 4 cut(s) 78, 135, 279, 558
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 3 cut(s) 135, 279, 558
MwoI GCNNNNNNNGC 5 cut(s) 32, 41, 536, 655, 676
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 438
NlaIV GGNNCC 2 cut(s) 168, 592
NmeAIII GCCGAG 1 cut(s) 619
NmuCI GTSAC 2 cut(s) 250, 412
OliI CACNNNNGTG 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 671
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 3 cut(s) 259, 538, 548
PleI GAGTC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 569
PpuMI RGGWCCY 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 133, 277, 556
PspGI CCWGG 3 cut(s) 133, 277, 556
PspN4I GGNNCC 2 cut(s) 168, 592
PspPI GGNCC 4 cut(s) 80, 166, 512, 591
PspPPI RGGWCCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 1 cut(s) 360
SalI GTCGAC 1 cut(s) 638
SaqAI TTAA 2 cut(s) 504, 691
SatI GCNGC 3 cut(s) 258, 537, 547
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 4 cut(s) 80, 166, 512, 591
SchI GAGTC 1 cut(s) 570
ScrFI CCNGG 4 cut(s) 78, 135, 279, 558
SduI GDGCHC 1 cut(s) 681
SfaNI GCATC 1 cut(s) 667
SfcI CTRYAG 2 cut(s) 86, 525
SinI GGWCC 3 cut(s) 80, 166, 512
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 3 cut(s) 128, 531, 688
SsiI CCGC 2 cut(s) 258, 333
SspMI CTAG 2 cut(s) 305, 380
StyD4I CCNGG 4 cut(s) 76, 133, 277, 556
TaaI ACNGT 2 cut(s) 120, 250
TaiI ACGT 2 cut(s) 267, 375
TaqI TCGA 1 cut(s) 639
TasI AATT 3 cut(s) 128, 531, 688
TauI GCSGC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 504, 691
Tru9I TTAA 2 cut(s) 504, 691
TseFI GTSAC 2 cut(s) 250, 412
TseI GCWGC 2 cut(s) 536, 546
Tsp45I GTSAC 2 cut(s) 250, 412
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 3 cut(s) 80, 166, 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 639
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 2 cut(s) 305, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.