RchiOBHm_Chr5g0034291

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000366
Physical Location & Seq
Reverse (-)
28136526 .. 28137666
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31331

Sequence Viewer

Length: 573 bp
ATGAAAGGAGTTCATTTGCCTATTGCTACTCTTGCCATCTTTGCATTGGCAACCTTCCTCGTCTCTGCCTCAGACCCCAGTCCTCTACAGGACTTCTGCGTAGCCATCAATAACGCACAGTTTTCCCAATTTCCCGGAGTGTTTGTGAATGGCAAGTTCTGCAAGGACCCAAAGCTTGCAACAGCAAATGATTTCTTCTTCTCTGGTCTCCAAATTCCAAAATCCACGGCAAACGCAGTTGGTTCAACCGTGACAGCCGCGAACGTGGAGCAAATCGCCGGATTGAACACCCTTGGGATATCCCTAGCTCGCATAGACTATGCACCAAATGGCGGTCTAAACCCTCCCCACACGCACCCTCGTGCCTCTGAAGTCCTTCTGGTCCTGGAAGGCACTCTCTACGTTGGCTTCGTCACCTCCAACCCCGATAACAAGCTGATCAGCAAGGTCTTGAACAAGGGAGATGTGTTTGTCTTCCCAGTCGGTCTCATTCACTTCCAACTTAACATCGGACCCGTCAATGCTGTAGCAATTGCTGCTCTTAGCAGCCAGAACCCAGGGGTATCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

190

Amino Acids

19.86

Weight (kDa)

6.89

Isoelectric Point (pI)

27.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 69 - 188 4.6e-41 Cupin
Cupin_2 PF07883 105 - 176 8.1e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 260
AciI CCGC 2 cut(s) 258, 333
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 3 cut(s) 246, 286, 454
AjnI CCWGG 2 cut(s) 384, 556
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 3 cut(s) 175, 308, 436
AluI AGCT 3 cut(s) 175, 308, 436
Alw26I GTCTC 3 cut(s) 67, 212, 491
ApeKI GCWGC 2 cut(s) 536, 546
ApoI RAATTY 1 cut(s) 213
Asp700I GAANNNNTTC 1 cut(s) 375
AspS9I GGNCC 3 cut(s) 166, 382, 512
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 406, 558
AvaII GGWCC 3 cut(s) 166, 382, 512
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 523, 558
BccI CCATC 2 cut(s) 44, 113
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 386, 558
BclI TGATCA 1 cut(s) 438
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 3 cut(s) 67, 212, 491
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 86, 525
BisI GCNGC 3 cut(s) 258, 537, 547
BlsI GCNGC 3 cut(s) 259, 538, 548
Bme1390I CCNGG 3 cut(s) 135, 386, 558
Bme18I GGWCC 3 cut(s) 166, 382, 512
BmgT120I GGNCC 3 cut(s) 166, 382, 512
BmiI GGNNCC 2 cut(s) 168, 514
BmrFI CCNGG 3 cut(s) 135, 386, 558
BmrI ACTGGG 2 cut(s) 72, 473
BmuI ACTGGG 2 cut(s) 72, 473
BoxI GACNNNNGTC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 212, 491
BsaJI CCNNGG 4 cut(s) 225, 292, 556, 557
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 78, 479
BseBI CCWGG 2 cut(s) 386, 558
BseDI CCNNGG 4 cut(s) 225, 292, 556, 557
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 78, 479
BseXI GCAGC 2 cut(s) 523, 558
Bsh1236I CGCG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 135, 279
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 3 cut(s) 67, 212, 491
BsmBI CGTCTC 1 cut(s) 67
Bso31I GGTCTC 2 cut(s) 212, 491
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 2 cut(s) 258, 333
BspCNI CTCAG 1 cut(s) 83
BspFNI CGCG 1 cut(s) 260
BspLI GGNNCC 2 cut(s) 168, 514
BspTNI GGTCTC 2 cut(s) 212, 491
BsrI ACTGG 2 cut(s) 78, 479
BssECI CCNNGG 4 cut(s) 225, 292, 556, 557
BssMI GATC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 292
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 2 cut(s) 386, 558
Bst4CI ACNGT 2 cut(s) 120, 250
BstAPI GCANNNNNTGC 2 cut(s) 159, 536
BstC8I GCNNGC 2 cut(s) 177, 310
BstDEI CTNAG 2 cut(s) 70, 542
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 3 cut(s) 67, 212, 491
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 159, 536
BstNI CCWGG 2 cut(s) 386, 558
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 3 cut(s) 133, 384, 556
BstSFI CTRYAG 2 cut(s) 86, 525
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 523, 558
BstV2I GAAGAC 1 cut(s) 466
BtgI CCRYGG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 177, 310
Cfr13I GGNCC 3 cut(s) 166, 382, 512
CviJI RGCY 7 cut(s) 104, 175, 257, 308, 408, 436, 549
CviKI_1 RGCY 7 cut(s) 104, 175, 257, 308, 408, 436, 549
DdeI CTNAG 2 cut(s) 70, 542
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 212, 491
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 166, 382, 512
Eco57I CTGAAG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 384, 556
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 292
Esp3I CGTCTC 1 cut(s) 67
FaiI YATR 3 cut(s) 314, 321, 571
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 3 cut(s) 258, 537, 547
Fsp4HI GCNGC 3 cut(s) 258, 537, 547
FspBI CTAG 1 cut(s) 305
GluI GCNGC 3 cut(s) 258, 537, 547
HapII CCGG 2 cut(s) 135, 279
HindIII AAGCTT 1 cut(s) 173
HpaII CCGG 2 cut(s) 135, 279
HphI GGTGA 2 cut(s) 406, 558
Hpy188I TCNGA 3 cut(s) 73, 370, 512
Hpy188III TCNNGA 1 cut(s) 451
HpyAV CCTTC 3 cut(s) 64, 383, 386
HpyCH4III ACNGT 2 cut(s) 120, 250
HpyCH4IV ACGT 2 cut(s) 264, 402
HpyCH4V TGCA 4 cut(s) 44, 162, 179, 323
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 159, 536
HpyF3I CTNAG 2 cut(s) 70, 542
HpySE526I ACGT 2 cut(s) 264, 402
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 523, 558
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 264, 402
MaeIII GTNAC 2 cut(s) 250, 412
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 3 cut(s) 187, 190, 466
MfeI CAATTG 1 cut(s) 531
MluCI AATT 3 cut(s) 128, 213, 531
MmeI TCCRAC 2 cut(s) 444, 523
MnlI CCTC 7 cut(s) 68, 79, 93, 354, 369, 376, 427
MroXI GAANNNNTTC 1 cut(s) 375
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 2 cut(s) 135, 279
MspR9I CCNGG 3 cut(s) 135, 386, 558
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 2 cut(s) 386, 558
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 159, 536
NciI CCSGG 1 cut(s) 135
NdeII GATC 1 cut(s) 438
NlaIV GGNNCC 2 cut(s) 168, 514
NmuCI GTSAC 2 cut(s) 250, 412
OliI CACNNNNGTG 1 cut(s) 360
PasI CCCWGGG 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 375
PfoI TCCNGGA 2 cut(s) 133, 384
PkrI GCNGC 3 cut(s) 259, 538, 548
PpuMI RGGWCCY 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 2 cut(s) 384, 556
PspGI CCWGG 2 cut(s) 384, 556
PspN4I GGNNCC 2 cut(s) 168, 514
PspPI GGNCC 3 cut(s) 166, 382, 512
PspPPI RGGWCCY 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 3 cut(s) 258, 537, 547
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 3 cut(s) 166, 382, 512
ScrFI CCNGG 3 cut(s) 135, 386, 558
SetI ASST 8 cut(s) 56, 177, 267, 310, 405, 419, 438, 450
SfcI CTRYAG 2 cut(s) 86, 525
SinI GGWCC 3 cut(s) 166, 382, 512
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 3 cut(s) 128, 213, 531
SsiI CCGC 2 cut(s) 258, 333
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 3 cut(s) 133, 384, 556
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 120, 250
TaiI ACGT 2 cut(s) 267, 405
TaqII GACCGA 1 cut(s) 473
TasI AATT 3 cut(s) 128, 213, 531
TauI GCSGC 1 cut(s) 260
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 2 cut(s) 250, 412
TseI GCWGC 2 cut(s) 536, 546
Tsp45I GTSAC 2 cut(s) 250, 412
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 3 cut(s) 166, 382, 512
XapI RAATTY 1 cut(s) 213
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 375
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.