FvH4_3g20400

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000366
Physical Location & Seq
Reverse (-)
13434567 .. 13436012
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20400.t1

Sequence Viewer

Length: 705 bp
ATGTCAACAATGAAAGGAGCTCATTTACTTACTGCTACTCTTGCCATCTTTGCATTGGCAACCTGCTTACTCGTGTCTGCCTCCGACCCCAGTCCTCTACAGGACTTCTGCGTAGCGATCAATAGCGCACAGTTTCCTCAATTTCCTGGAGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCAAAGATGGCAACAGCAAACGATTTCTTCTTCGCTGGTCTGCAAATTCCGAAACCCACAGCGAATGCGGTTGGTTCAACCGTGACAGCCGCGAACGTGGAGCAAATCCCCGGACTGAACACACTTGGGATATCCCTAGCTCGCATAGACTATGCACCAAACGGTGGTCTAAACCCTCCCCACACTCACCCTCGTGCCTCTGAAGTCCTTGTAGTCTTGGAAGGCACTCTCTACGTTGGCTTCGTCACCTCGAATCCCGATAACAAGCTGATCAGCAAGGTCTTGAACAAGGGAGACGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAGCTGAACATCGGACCCGTTAATGCTGTAGCACTTGCTGCTCTTAGCAGCCAGAACCCAGGAGTCATCACCATAGCCAATGCAGTTTTCGGGGCCAATCCTCCCATCAATCCTGATGTTCTAAGCAAGGCGTTCCAGGTCGATGAAAAGCTCGTTGAGTATCTCCAGAAACAGTTCTGGTACAACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

235

Amino Acids

24.84

Weight (kDa)

6.39

Isoelectric Point (pI)

26.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 73 - 221 2e-52 Cupin
Cupin_2 PF07883 109 - 182 6.9e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 344
AccII CGCG 1 cut(s) 272
AciI CCGC 2 cut(s) 248, 270
AcsI RAATTY 1 cut(s) 225
AcuI CTGAAG 1 cut(s) 402
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 2 cut(s) 187, 344
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 2 cut(s) 258, 466
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 3 cut(s) 145, 568, 645
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AleI CACNNNNGTG 1 cut(s) 372
AluBI AGCT 5 cut(s) 20, 320, 448, 514, 661
AluI AGCT 5 cut(s) 20, 320, 448, 514, 661
Alw21I GWGCWC 1 cut(s) 22
Alw26I GTCTC 2 cut(s) 468, 503
AoxI GGCC 1 cut(s) 603
ApeKI GCWGC 2 cut(s) 548, 558
ApoI RAATTY 1 cut(s) 225
Asp700I GAANNNNTTC 1 cut(s) 683
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 178, 524, 603
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 359, 418, 571
AvaII GGWCC 2 cut(s) 178, 524
BanII GRGCYC 1 cut(s) 22
BauI CACGAG 2 cut(s) 71, 372
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 535, 570
BccI CCATC 3 cut(s) 53, 181, 623
BciT130I CCWGG 3 cut(s) 147, 570, 647
BclI TGATCA 1 cut(s) 450
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 468, 503
BfaI CTAG 1 cut(s) 317
BfmI CTRYAG 2 cut(s) 98, 537
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 3 cut(s) 270, 549, 559
BlsI GCNGC 3 cut(s) 271, 550, 560
Bme1390I CCNGG 4 cut(s) 147, 291, 570, 647
Bme18I GGWCC 2 cut(s) 178, 524
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 3 cut(s) 178, 524, 603
BmiI GGNNCC 3 cut(s) 180, 526, 604
BmrFI CCNGG 4 cut(s) 147, 291, 570, 647
BmrI ACTGGG 2 cut(s) 84, 485
BmuI ACTGGG 2 cut(s) 84, 485
BoxI GACNNNNGTC 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 2 cut(s) 168, 659
BpuMI CCSGG 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 503
BsaJI CCNNGG 2 cut(s) 289, 568
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 187, 344
Bse1I ACTGG 2 cut(s) 90, 491
BseBI CCWGG 3 cut(s) 147, 570, 647
BseDI CCNNGG 2 cut(s) 289, 568
BseLI CCNNNNNNNGG 2 cut(s) 187, 344
BseNI ACTGG 2 cut(s) 90, 491
BseXI GCAGC 2 cut(s) 535, 570
Bsh1236I CGCG 1 cut(s) 272
BshFI GGCC 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 187, 344
BsmAI GTCTC 2 cut(s) 468, 503
BsmBI CGTCTC 1 cut(s) 468
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 605
Bso31I GGTCTC 1 cut(s) 503
Bsp1286I GDGCHC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 117, 450
BspACI CCGC 2 cut(s) 248, 270
BspANI GGCC 1 cut(s) 605
BspFNI CGCG 1 cut(s) 272
BspLI GGNNCC 3 cut(s) 180, 526, 604
BspMI ACCTGC 1 cut(s) 71
BspTNI GGTCTC 1 cut(s) 503
BsrI ACTGG 2 cut(s) 90, 491
BssECI CCNNGG 2 cut(s) 289, 568
BssMI GATC 2 cut(s) 117, 450
BssSI CACGAG 2 cut(s) 71, 372
Bst2BI CACGAG 2 cut(s) 71, 372
Bst2UI CCWGG 3 cut(s) 147, 570, 647
Bst4CI ACNGT 4 cut(s) 132, 262, 344, 684
BstAPI GCANNNNNTGC 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 2 cut(s) 554, 632
BstFNI CGCG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 2 cut(s) 120, 453
BstMAI GTCTC 2 cut(s) 468, 503
BstMBI GATC 2 cut(s) 117, 450
BstMWI GCNNNNNNNGC 3 cut(s) 41, 50, 548
BstNI CCWGG 3 cut(s) 147, 570, 647
BstPAI GACNNNNGTC 1 cut(s) 90
BstSCI CCNGG 4 cut(s) 145, 289, 568, 645
BstSFI CTRYAG 2 cut(s) 98, 537
BstUI CGCG 1 cut(s) 272
BstV1I GCAGC 2 cut(s) 535, 570
BstV2I GAAGAC 1 cut(s) 478
BsuRI GGCC 1 cut(s) 605
BtrI CACGTC 1 cut(s) 478
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 322
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 178, 524, 603
Csp6I GTAC 1 cut(s) 691
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 2 cut(s) 554, 632
DpnI GATC 2 cut(s) 119, 452
DpnII GATC 2 cut(s) 117, 450
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 503
Eco32I GATATC 1 cut(s) 312
Eco47I GGWCC 2 cut(s) 178, 524
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 402
EcoICRI GAGCTC 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 3 cut(s) 145, 568, 645
EcoRV GATATC 1 cut(s) 312
EcoT38I GRGCYC 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 468
FaiI YATR 3 cut(s) 326, 333, 584
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 3 cut(s) 270, 549, 559
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 3 cut(s) 270, 549, 559
FspBI CTAG 1 cut(s) 317
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 270, 549, 559
GsuI CTGGAG 2 cut(s) 168, 659
HaeIII GGCC 1 cut(s) 605
HapII CCGG 1 cut(s) 291
HhaI GCGC 1 cut(s) 128
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 433, 573
HpaII CCGG 1 cut(s) 291
HphI GGTGA 3 cut(s) 359, 418, 571
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 85, 231, 382, 524
Hpy188III TCNNGA 4 cut(s) 437, 463, 623, 676
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 4 cut(s) 132, 262, 344, 684
HpyCH4IV ACGT 3 cut(s) 276, 414, 477
HpyCH4V TGCA 5 cut(s) 53, 174, 223, 335, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 50, 548
HpyF3I CTNAG 2 cut(s) 554, 632
HpySE526I ACGT 3 cut(s) 276, 414, 477
HspAI GCGC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 2 cut(s) 117, 450
LmnI GCTCC 2 cut(s) 17, 280
Lsp1109I GCAGC 2 cut(s) 535, 570
MaeI CTAG 1 cut(s) 317
MaeII ACGT 3 cut(s) 276, 414, 477
MaeIII GTNAC 2 cut(s) 262, 424
MalI GATC 2 cut(s) 119, 452
MboI GATC 2 cut(s) 117, 450
MboII GAAGA 3 cut(s) 199, 202, 478
MhlI GDGCHC 1 cut(s) 22
MluCI AATT 3 cut(s) 140, 225, 700
MlyI GAGTC 1 cut(s) 582
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 8 cut(s) 91, 105, 147, 366, 381, 388, 439, 621
MroXI GAANNNNTTC 1 cut(s) 683
MseI TTAA 2 cut(s) 531, 703
MslI CAYNNNNRTG 1 cut(s) 372
MspA1I CMGCKG 1 cut(s) 514
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 4 cut(s) 147, 291, 570, 647
Mva1269I GAATGC 1 cut(s) 250
MvaI CCWGG 3 cut(s) 147, 570, 647
MvnI CGCG 1 cut(s) 272
MwoI GCNNNNNNNGC 3 cut(s) 41, 50, 548
NciI CCSGG 1 cut(s) 291
NdeII GATC 2 cut(s) 117, 450
NlaIV GGNNCC 3 cut(s) 180, 526, 604
NmuCI GTSAC 2 cut(s) 262, 424
OliI CACNNNNGTG 1 cut(s) 372
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PctI GAATGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 683
PfeI GAWTC 1 cut(s) 433
PflMI CCANNNNNTGG 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 145
PkrI GCNGC 3 cut(s) 271, 550, 560
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PpuMI RGGWCCY 1 cut(s) 178
PshAI GACNNNNGTC 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 22
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 3 cut(s) 145, 568, 645
PspGI CCWGG 3 cut(s) 145, 568, 645
PspN4I GGNNCC 3 cut(s) 180, 526, 604
PspPI GGNCC 3 cut(s) 178, 524, 603
PspPPI RGGWCCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 514
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
RseI CAYNNNNRTG 1 cut(s) 372
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 531, 703
SatI GCNGC 3 cut(s) 270, 549, 559
Sau3AI GATC 2 cut(s) 117, 450
Sau96I GGNCC 3 cut(s) 178, 524, 603
SchI GAGTC 1 cut(s) 582
ScrFI CCNGG 4 cut(s) 147, 291, 570, 647
SduI GDGCHC 1 cut(s) 22
SfcI CTRYAG 2 cut(s) 98, 537
SinI GGWCC 2 cut(s) 178, 524
SmiMI CAYNNNNRTG 1 cut(s) 372
Sse9I AATT 3 cut(s) 140, 225, 700
SsiI CCGC 2 cut(s) 248, 270
SspMI CTAG 1 cut(s) 317
SstI GAGCTC 1 cut(s) 22
StyD4I CCNGG 4 cut(s) 145, 289, 568, 645
TaaI ACNGT 4 cut(s) 132, 262, 344, 684
TaiI ACGT 3 cut(s) 279, 417, 480
TaqI TCGA 2 cut(s) 431, 651
TasI AATT 3 cut(s) 140, 225, 700
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 433
Tru1I TTAA 2 cut(s) 531, 703
Tru9I TTAA 2 cut(s) 531, 703
TseFI GTSAC 2 cut(s) 262, 424
TseI GCWGC 2 cut(s) 548, 558
Tsp45I GTSAC 2 cut(s) 262, 424
TspDTI ATGAA 2 cut(s) 26, 669
Van91I CCANNNNNTGG 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 178, 524
XapI RAATTY 1 cut(s) 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.