Prupe.8G035900_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000366
Physical Location & Seq
Forward (+)
3290063 .. 3291320
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G035900.1

Sequence Viewer

Length: 705 bp
ATGAAAGGTGTTCATTTCCTCATAAGCACTCTTGCCATATTGGCATCTGCAACCTTCCTTGTCTCTGCATCTGACCCCAGTCCTCTTCAGGACTTCTGTGTAGCACTCAATGACACCAAATCTGCTGGTGGATATTTCGGTGCAGGTGCAGTGTTTGTGAATGGGAAATTCTGCAAGGACCCAAAGCTTGTCAATGCAAATGATTTCTTTTTTTCTGGGCTCCAAAATCCAAGAAACACACAAAATCCGGTTGGTTCAAATGTAACAGCCGTGAATGTGGACAATCTAGCAGGACTGAACACTCTCGGCATATCCTTGGCTCGCATAGACTTTGCACCAAATGGCCTGAACCCTCCTCACACTCACCCTCGTGCCACCGAGATCCTTGTGGTCTTGGAAGGAACACTCTATGTTGGTTTCGTCACATCCAACGGTGATGGCAATCGCCTATTCACCAAAGTGTTGAACGAGGGAGATGTGTTTGTGTTCCCAATTGGCCTCATTCACTTTCAACTGAATGTGGGACATGTCAACGCTGTAGCCTTCGCTGGGCTTAGCAGCCAGAACCCAGGAGTGATCACCATAGCCAATGCAGTGTTTGGCTCCAAGCCTCCCATCAACCCTGATGTTCTAGCCAAGGCCTTCCAAGTGGACAACAATCTGGTTGACTATCTTCAGAAACAGTTCTGGTACGACAACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

235

Amino Acids

24.94

Weight (kDa)

5.88

Isoelectric Point (pI)

14.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 134
Acc36I ACCTGC 1 cut(s) 134
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 2 cut(s) 71, 659
AfaI GTAC 1 cut(s) 692
AfiI CCNNNNNNNGG 1 cut(s) 549
AflIII ACRYGT 1 cut(s) 526
AgsI TTSAA 3 cut(s) 258, 466, 512
AjnI CCWGG 1 cut(s) 568
AleI CACNNNNGTG 2 cut(s) 369, 458
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 376
AoxI GGCC 3 cut(s) 343, 496, 639
ApeKI GCWGC 1 cut(s) 558
ApoI RAATTY 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 178
AsuHPI GGTGA 4 cut(s) 356, 445, 446, 571
AvaII GGWCC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 222
BauI CACGAG 1 cut(s) 369
BbvI GCAGC 1 cut(s) 570
BccI CCATC 2 cut(s) 431, 623
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 570
BclI TGATCA 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 2 cut(s) 287, 632
BfmI CTRYAG 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 134
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 1 cut(s) 559
BlpI GCTNAGC 1 cut(s) 554
BlsI GCNGC 1 cut(s) 560
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 1 cut(s) 178
BmiI GGNNCC 3 cut(s) 180, 221, 604
BmrFI CCNGG 1 cut(s) 570
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 2 cut(s) 53, 77
BmuI ACTGGG 1 cut(s) 72
BoxI GACNNNNGTC 1 cut(s) 78
Bpu1102I GCTNAGC 1 cut(s) 554
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 3 cut(s) 315, 568, 636
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse1I ACTGG 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 441
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 315, 568, 636
BseGI GGATG 1 cut(s) 425
BseJI GATNNNNATC 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 549
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 570
BseYI CCCAGC 1 cut(s) 548
BsgI GTGCAG 2 cut(s) 162, 168
BshFI GGCC 3 cut(s) 345, 498, 641
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 537
BslI CCNNNNNNNGG 1 cut(s) 549
BsmAI GTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 537
BsnI GGCC 3 cut(s) 345, 498, 641
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 381, 576
Bsp1720I GCTNAGC 1 cut(s) 554
BspANI GGCC 3 cut(s) 345, 498, 641
BspLI GGNNCC 3 cut(s) 180, 221, 604
BspMI ACCTGC 1 cut(s) 134
BspPI GGATC 1 cut(s) 376
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 315, 568, 636
BssMI GATC 2 cut(s) 381, 576
BssSI CACGAG 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 315, 636
Bst2BI CACGAG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 434, 684
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 554
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 2 cut(s) 384, 579
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 381, 576
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 530
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 568
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 1 cut(s) 570
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BsuRI GGCC 3 cut(s) 345, 498, 641
BtsCI GGATG 1 cut(s) 425
BtsI GCAGTG 2 cut(s) 156, 600
BtsIMutI CAGTG 2 cut(s) 156, 600
BveI ACCTGC 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 322
Cfr13I GGNCC 1 cut(s) 178
Csp6I GTAC 1 cut(s) 691
CviAII CATG 1 cut(s) 527
CviQI GTAC 1 cut(s) 691
DdeI CTNAG 1 cut(s) 554
DpnI GATC 2 cut(s) 383, 578
DpnII GATC 2 cut(s) 381, 576
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 315, 636
Eco147I AGGCCT 1 cut(s) 641
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 71, 659
EcoO109I RGGNCCY 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 568
EcoT14I CCWWGG 2 cut(s) 315, 636
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 315, 636
FaeI CATG 1 cut(s) 530
FaiI YATR 7 cut(s) 23, 38, 311, 326, 411, 528, 584
FaqI GGGAC 1 cut(s) 537
FatI CATG 1 cut(s) 526
FbaI TGATCA 1 cut(s) 576
Fnu4HI GCNGC 1 cut(s) 559
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 559
FspBI CTAG 2 cut(s) 287, 632
GluI GCNGC 1 cut(s) 559
GsaI CCCAGC 1 cut(s) 552
HaeIII GGCC 3 cut(s) 345, 498, 641
HapII CCGG 1 cut(s) 248
Hin1II CATG 1 cut(s) 530
HincII GTYRAC 2 cut(s) 532, 667
HindII GTYRAC 2 cut(s) 532, 667
HindIII AAGCTT 1 cut(s) 185
HpaII CCGG 1 cut(s) 248
HphI GGTGA 4 cut(s) 356, 445, 446, 571
Hpy166II GTNNAC 4 cut(s) 280, 532, 652, 667
Hpy188I TCNGA 2 cut(s) 73, 678
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 4 cut(s) 280, 532, 652, 667
HpyAV CCTTC 4 cut(s) 64, 392, 553, 652
HpyCH4III ACNGT 2 cut(s) 434, 684
HpyCH4V TGCA 8 cut(s) 50, 68, 143, 149, 174, 197, 335, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 554
Hsp92II CATG 1 cut(s) 530
Ksp22I TGATCA 1 cut(s) 576
Kzo9I GATC 2 cut(s) 381, 576
LmnI GCTCC 2 cut(s) 225, 608
Lsp1109I GCAGC 1 cut(s) 570
LweI GCATC 2 cut(s) 53, 77
MaeI CTAG 2 cut(s) 287, 632
MaeIII GTNAC 2 cut(s) 262, 421
MalI GATC 2 cut(s) 383, 578
MboI GATC 2 cut(s) 381, 576
MboII GAAGA 2 cut(s) 77, 665
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 3 cut(s) 167, 492, 700
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 8 cut(s) 29, 93, 363, 366, 378, 463, 509, 621
MroXI GAANNNNTTC 1 cut(s) 683
MslI CAYNNNNRTG 2 cut(s) 369, 458
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 1 cut(s) 492
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 2 cut(s) 381, 576
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 3 cut(s) 180, 221, 604
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 1 cut(s) 421
NspI RCATGY 1 cut(s) 530
OliI CACNNNNGTG 2 cut(s) 369, 458
PaqCI CACCTGC 1 cut(s) 134
PceI AGGCCT 1 cut(s) 641
PciI ACATGT 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 683
PkrI GCNGC 1 cut(s) 560
PpuMI RGGWCCY 1 cut(s) 178
PscI ACATGT 1 cut(s) 526
PshAI GACNNNNGTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 180, 221, 604
PspPI GGNCC 1 cut(s) 178
PspPPI RGGWCCY 1 cut(s) 178
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
RseI CAYNNNNRTG 2 cut(s) 369, 458
SatI GCNGC 1 cut(s) 559
Sau3AI GATC 2 cut(s) 381, 576
Sau96I GGNCC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 1 cut(s) 222
SetI ASST 4 cut(s) 10, 56, 148, 189
SfaNI GCATC 2 cut(s) 53, 77
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 369, 458
Sse9I AATT 3 cut(s) 167, 492, 700
SseBI AGGCCT 1 cut(s) 641
SspMI CTAG 2 cut(s) 287, 632
StuI AGGCCT 1 cut(s) 641
StyD4I CCNGG 1 cut(s) 568
StyI CCWWGG 2 cut(s) 315, 636
TaaI ACNGT 2 cut(s) 434, 684
TasI AATT 3 cut(s) 167, 492, 700
TscAI CASTG 2 cut(s) 156, 600
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 558
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 156, 600
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 1 cut(s) 167
XceI RCATGY 1 cut(s) 530
XmnI GAANNNNTTC 1 cut(s) 683
XspI CTAG 2 cut(s) 287, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.