Prupe.8G048300_v2.0.a1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000366
Physical Location & Seq
Reverse (-)
5253086 .. 5254447
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G048300.1

Sequence Viewer

Length: 702 bp
ATGAAAGTTGTTCTTTTTCTCATAAGCACTCTTGCCATATTGGCATTTGCAACCTTCCTTGCCTCAGCCTCTGATCCCAGTCCTCTTCAGGACTTCTGTGTAGCAATCAATGACACCAAATCTCCTGTGATTCTAAATGGGATAGCGGTGTTTGTGAATGGGAAATTCTGCAAGGATCCTAAGCTTGCCAATGCGAATGATTTCTTCCTCTCCGGATTTCAAATTCCAAGAAGCACACAAAATCCGGTTGGTTCGACGGTGACACCTGCGAGCGTGGACCAAATAGCCGGATTGAACACTCTCGGCATATCCCTGGCTCGCATAGACTTTGGACCAAATGGCCTAAACCCTCCTCATACTCACCCTCGTGGCACTGAAATCCTTGTAGTCGTGGAAGGTACACTCTATGTTGGTTTCGTTACATCCAACGGTGATGGCAATCGCCTATTCACTAAAGTATTGAACAAGGGAGATGTGTTTGTGTTCCCAATTGGTCTAATTCACTTCCAACTCAATGTGGGACACGTCAACGCTGTAGCCCTTGCCGCTCTTAGCAGCCAGAACCCAGGCGTTATCACCATTGCAAATGCAGTTTTTGGCTCCAAGCCTCCCATCAATCCTGATGTTCTAGCCAAGGCCTTCCAAGTGGACAACAAGGTTGTTGATTATCTTCAGAAACAGTTCTGGTACAACAACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

234

Amino Acids

24.84

Weight (kDa)

7.79

Isoelectric Point (pI)

18.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 274
AccBSI CCGCTC 1 cut(s) 548
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 2 cut(s) 146, 546
AclWI GGATC 3 cut(s) 68, 170, 183
AcsI RAATTY 2 cut(s) 164, 222
AcuI CTGAAG 2 cut(s) 71, 656
AfaI GTAC 2 cut(s) 400, 689
AflIII ACRYGT 1 cut(s) 523
AgsI TTSAA 3 cut(s) 221, 295, 463
AjiI CACGTC 1 cut(s) 526
AjnI CCWGG 2 cut(s) 312, 565
AleI CACNNNNGTG 1 cut(s) 366
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
AlwI GGATC 3 cut(s) 68, 170, 183
AlwNI CAGNNNCTG 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 2 cut(s) 340, 636
ApeKI GCWGC 1 cut(s) 555
ApoI RAATTY 2 cut(s) 164, 222
Asp700I GAANNNNTTC 2 cut(s) 200, 680
AspS9I GGNCC 2 cut(s) 277, 332
AsuHPI GGTGA 4 cut(s) 271, 353, 443, 568
AvaII GGWCC 2 cut(s) 277, 332
BamHI GGATCC 1 cut(s) 175
BauI CACGAG 1 cut(s) 366
BbvCI CCTCAGC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 567
BccI CCATC 2 cut(s) 428, 620
BciT130I CCWGG 2 cut(s) 314, 567
BfaI CTAG 1 cut(s) 629
BfmI CTRYAG 1 cut(s) 534
BfuAI ACCTGC 1 cut(s) 274
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 2 cut(s) 546, 556
BlsI GCNGC 2 cut(s) 547, 557
Bme1390I CCNGG 2 cut(s) 314, 567
Bme18I GGWCC 2 cut(s) 277, 332
BmgBI CACGTC 1 cut(s) 526
BmgT120I GGNCC 2 cut(s) 277, 332
BmiI GGNNCC 2 cut(s) 177, 601
BmrFI CCNGG 2 cut(s) 314, 567
BmrI ACTGGG 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 72
Bpu10I CCTNAGC 2 cut(s) 64, 180
BsaBI GATNNNNATC 1 cut(s) 438
BsaJI CCNNGG 3 cut(s) 312, 565, 633
BsaWI WCCGGW 2 cut(s) 212, 244
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bse1I ACTGG 1 cut(s) 78
Bse3DI GCAATG 1 cut(s) 579
Bse8I GATNNNNATC 1 cut(s) 438
BseAI TCCGGA 1 cut(s) 212
BseBI CCWGG 2 cut(s) 314, 567
BseDI CCNNGG 3 cut(s) 312, 565, 633
BseGI GGATG 1 cut(s) 422
BseJI GATNNNNATC 1 cut(s) 438
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 567
BshFI GGCC 2 cut(s) 342, 638
BsiSI CCGG 3 cut(s) 213, 245, 288
BslFI GGGAC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 534
BsnI GGCC 2 cut(s) 342, 638
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 2 cut(s) 73, 175
BspACI CCGC 2 cut(s) 146, 546
BspANI GGCC 2 cut(s) 342, 638
BspCNI CTCAG 1 cut(s) 77
BspEI TCCGGA 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 177, 601
BspMI ACCTGC 1 cut(s) 274
BspPI GGATC 3 cut(s) 68, 170, 183
BsrBI CCGCTC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 1 cut(s) 78
BssECI CCNNGG 3 cut(s) 312, 565, 633
BssMI GATC 2 cut(s) 73, 175
BssSI CACGAG 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 633
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 2 cut(s) 314, 567
Bst4CI ACNGT 4 cut(s) 259, 431, 681, 698
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 3 cut(s) 186, 271, 319
BstDEI CTNAG 3 cut(s) 64, 180, 551
BstF5I GGATG 1 cut(s) 422
BstKTI GATC 2 cut(s) 76, 178
BstMBI GATC 2 cut(s) 73, 175
BstMWI GCNNNNNNNGC 2 cut(s) 41, 545
BstNI CCWGG 2 cut(s) 314, 567
BstSCI CCNGG 2 cut(s) 312, 565
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 567
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 2 cut(s) 342, 638
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 372
BveI ACCTGC 1 cut(s) 274
Cac8I GCNNGC 3 cut(s) 186, 271, 319
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 277, 332
Csp6I GTAC 2 cut(s) 399, 688
CviQI GTAC 2 cut(s) 399, 688
DdeI CTNAG 3 cut(s) 64, 180, 551
DpnI GATC 2 cut(s) 75, 177
DpnII GATC 2 cut(s) 73, 175
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 633
Eco147I AGGCCT 1 cut(s) 638
Eco47I GGWCC 2 cut(s) 277, 332
Eco57I CTGAAG 2 cut(s) 71, 656
EcoRII CCWGG 2 cut(s) 312, 565
EcoT14I CCWWGG 1 cut(s) 633
ErhI CCWWGG 1 cut(s) 633
FaiI YATR 6 cut(s) 23, 38, 308, 323, 357, 408
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 534
Fnu4HI GCNGC 2 cut(s) 546, 556
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 546, 556
FspBI CTAG 1 cut(s) 629
GluI GCNGC 2 cut(s) 546, 556
HaeIII GGCC 2 cut(s) 342, 638
HapII CCGG 3 cut(s) 213, 245, 288
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 130
HpaII CCGG 3 cut(s) 213, 245, 288
HphI GGTGA 4 cut(s) 271, 353, 443, 568
Hpy166II GTNNAC 4 cut(s) 277, 401, 529, 649
Hpy188I TCNGA 2 cut(s) 73, 675
Hpy188III TCNNGA 3 cut(s) 89, 213, 620
Hpy8I GTNNAC 4 cut(s) 277, 401, 529, 649
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 64, 389, 649
HpyCH4III ACNGT 4 cut(s) 259, 431, 681, 698
HpyCH4IV ACGT 1 cut(s) 525
HpyCH4V TGCA 4 cut(s) 50, 171, 584, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 545
HpyF3I CTNAG 3 cut(s) 64, 180, 551
HpySE526I ACGT 1 cut(s) 525
Kpn2I TCCGGA 1 cut(s) 212
Kzo9I GATC 2 cut(s) 73, 175
LmnI GCTCC 1 cut(s) 605
Lsp1109I GCAGC 1 cut(s) 567
MaeI CTAG 1 cut(s) 629
MaeII ACGT 1 cut(s) 525
MaeIII GTNAC 2 cut(s) 259, 418
MalI GATC 2 cut(s) 75, 177
MbiI CCGCTC 1 cut(s) 548
MboI GATC 2 cut(s) 73, 175
MboII GAAGA 3 cut(s) 77, 196, 662
MfeI CAATTG 1 cut(s) 489
MflI RGATCY 1 cut(s) 175
MluCI AATT 4 cut(s) 164, 222, 489, 498
MmeI TCCRAC 2 cut(s) 450, 532
MnlI CCTC 8 cut(s) 73, 79, 93, 218, 360, 363, 375, 618
MroI TCCGGA 1 cut(s) 212
MroXI GAANNNNTTC 2 cut(s) 200, 680
MseI TTAA 1 cut(s) 700
MslI CAYNNNNRTG 1 cut(s) 366
MspI CCGG 3 cut(s) 213, 245, 288
MspR9I CCNGG 2 cut(s) 314, 567
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 2 cut(s) 314, 567
MwoI GCNNNNNNNGC 2 cut(s) 41, 545
NdeII GATC 2 cut(s) 73, 175
NlaIV GGNNCC 2 cut(s) 177, 601
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 366
PaqCI CACCTGC 1 cut(s) 274
PceI AGGCCT 1 cut(s) 638
PdmI GAANNNNTTC 2 cut(s) 200, 680
PfeI GAWTC 1 cut(s) 130
PkrI GCNGC 2 cut(s) 547, 557
Psp6I CCWGG 2 cut(s) 312, 565
PspGI CCWGG 2 cut(s) 312, 565
PspN4I GGNNCC 2 cut(s) 177, 601
PspPI GGNCC 2 cut(s) 277, 332
PstNI CAGNNNCTG 1 cut(s) 71
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 2 cut(s) 400, 689
RsaNI GTAC 2 cut(s) 399, 688
RseI CAYNNNNRTG 1 cut(s) 366
SaqAI TTAA 1 cut(s) 700
SatI GCNGC 2 cut(s) 546, 556
Sau3AI GATC 2 cut(s) 73, 175
Sau96I GGNCC 2 cut(s) 277, 332
ScrFI CCNGG 2 cut(s) 314, 567
SetI ASST 6 cut(s) 56, 186, 268, 400, 528, 660
SfcI CTRYAG 1 cut(s) 534
SinI GGWCC 2 cut(s) 277, 332
SmiMI CAYNNNNRTG 1 cut(s) 366
Sse9I AATT 4 cut(s) 164, 222, 489, 498
SseBI AGGCCT 1 cut(s) 638
SsiI CCGC 2 cut(s) 146, 546
SspMI CTAG 1 cut(s) 629
StuI AGGCCT 1 cut(s) 638
StyD4I CCNGG 2 cut(s) 312, 565
StyI CCWWGG 1 cut(s) 633
TaaI ACNGT 4 cut(s) 259, 431, 681, 698
TaiI ACGT 1 cut(s) 528
TaqI TCGA 1 cut(s) 254
TasI AATT 4 cut(s) 164, 222, 489, 498
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 1 cut(s) 130
Tru1I TTAA 1 cut(s) 700
Tru9I TTAA 1 cut(s) 700
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 555
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 277, 332
XapI RAATTY 2 cut(s) 164, 222
XmnI GAANNNNTTC 2 cut(s) 200, 680
XspI CTAG 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.