Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000366

Physical Location & Seq

Genomic Coordinates Reverse (-)

15665502 .. 15666472

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGGGTTTCTCAATCTCTAATCCCTTTTGCCATAATTGCTTTGGTCCTTTCCTTTGTCAATGCTTATGATCCAAGTCCACTCCAAGACTTCTGTGTTGCCATTGATGACCTAAAAGGCGTTTTTGTGAATGGTAGGTTTTGTAAAGACCCGGAGCGAGTCGATGCAAAAGATTTTTTCTTCTCAGGTCTCAATGTGCCCGGGAACACCAATAATCAAGTTGGCTCTAATGTGACCACTGTTAATGTTGATCAGATCCCCGGGCTAAACACCATGGGAATATCATTGGTCCGCATAGACTACGCACCGCATGGCCAAAATCCACCTCACACGCACCCTCGTGGCTCAGAGATCCTTGTCCTTGTCGAAGGAACATTATACGTCGGTTTTGTCTCTTCCAATCAAGATAACAACCGGTTATTCGCCAAAGTATTGCACCCCGGTGATGTTTTTGTGTTCCCCATAGGAATGATCCATTTTCAGTTAAATATCGGGAAAATTCCAGCAATTGCTTTTGCGGGATTGAGTAGCCAGAACGCTGGTGTTATCACAATTGCAAACACTGTGTTCGGGTCAAACCCTCCGATTTATCCAGAGCTTCTTGCCAGGGCGTTCCAGTTGGATGCAAATGTTGTCAAAGAACTTCAAGCCAAGTTTGGGTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0016020 GO:0030312 GO:0031012 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

222

Amino Acids

24.01

Weight (kDa)

5.9

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	63 - 213	1.1e-52	Cupin
Cupin_2	PF07883	99 - 170	5.3e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca	FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica	MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica	Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis	pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis	RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata	RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora	Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii	Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa	Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha	Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana	Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	292, 308, 518
AclWI	GGATC	4 cut(s)	65, 250, 346, 466
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	657
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	647
AjnI	CCWGG	1 cut(s)	605
AleI	CACNNNNGTG	2 cut(s)	339, 441
AluBI	AGCT	1 cut(s)	598
AluI	AGCT	1 cut(s)	598
Alw26I	GTCTC	2 cut(s)	194, 397
AlwI	GGATC	4 cut(s)	65, 250, 346, 466
Ama87I	CYCGRG	2 cut(s)	200, 260
AoxI	GGCC	1 cut(s)	313
ApoI	RAATTY	1 cut(s)	498
AsiGI	ACCGGT	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	46, 289, 660
AsuC2I	CCSGG	6 cut(s)	152, 201, 202, 261, 262, 441
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	2 cut(s)	200, 260
AvaII	GGWCC	3 cut(s)	46, 289, 660
BaeGI	GKGCMC	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	315
BauI	CACGAG	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	607
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	6 cut(s)	152, 201, 202, 261, 262, 441
BcoDI	GTCTC	2 cut(s)	194, 397
Bme1390I	CCNGG	7 cut(s)	152, 201, 202, 261, 262, 441, 607
Bme18I	GGWCC	3 cut(s)	46, 289, 660
BmeT110I	CYCGRG	2 cut(s)	200, 260
BmgT120I	GGNCC	3 cut(s)	46, 289, 660
BmiI	GGNNCC	1 cut(s)	661
BmrFI	CCNGG	7 cut(s)	152, 201, 202, 261, 262, 441, 607
BmsI	GCATC	2 cut(s)	154, 613
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuMI	CCSGG	6 cut(s)	152, 201, 202, 261, 262, 441
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	6 cut(s)	200, 259, 260, 273, 439, 606
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	1 cut(s)	657
Bse118I	RCCGGY	1 cut(s)	414
Bse1I	ACTGG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	607
BseDI	CCNNGG	6 cut(s)	200, 259, 260, 273, 439, 606
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	198, 360
BseNI	ACTGG	1 cut(s)	616
BseSI	GKGCMC	1 cut(s)	201
BshFI	GGCC	1 cut(s)	315
BshTI	ACCGGT	1 cut(s)	414
BsiHKCI	CYCGRG	2 cut(s)	200, 260
BsiSI	CCGG	5 cut(s)	152, 201, 261, 415, 441
BslI	CCNNNNNNNGG	1 cut(s)	657
BsmAI	GTCTC	2 cut(s)	194, 397
BsnI	GGCC	1 cut(s)	315
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	200, 260
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	5 cut(s)	70, 250, 255, 351, 471
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	3 cut(s)	292, 308, 518
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	2 cut(s)	197, 359
BspLI	GGNNCC	1 cut(s)	661
BspPI	GGATC	4 cut(s)	65, 250, 346, 466
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	414
BssECI	CCNNGG	6 cut(s)	200, 259, 260, 273, 439, 606
BssMI	GATC	5 cut(s)	70, 250, 255, 351, 471
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	1 cut(s)	607
Bst4CI	ACNGT	2 cut(s)	241, 565
Bst6I	CTCTTC	1 cut(s)	400
BstDEI	CTNAG	2 cut(s)	184, 346
BstDSI	CCRYGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	5 cut(s)	73, 253, 258, 354, 474
BstMAI	GTCTC	2 cut(s)	194, 397
BstMBI	GATC	5 cut(s)	70, 250, 255, 351, 471
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	607
BstSCI	CCNGG	7 cut(s)	150, 199, 200, 259, 260, 439, 605
BstSLI	GKGCMC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	255, 351
BstXI	CCANNNNNNTGG	1 cut(s)	539
BstYI	RGATCY	2 cut(s)	255, 351
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	237, 561
Cfr10I	RCCGGY	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	46, 289, 660
Cfr9I	CCCGGG	2 cut(s)	200, 260
CspAI	ACCGGT	1 cut(s)	414
CviAII	CATG	2 cut(s)	274, 311
CviJI	RGCY	7 cut(s)	225, 265, 315, 345, 531, 598, 650
CviKI_1	RGCY	7 cut(s)	225, 265, 315, 345, 531, 598, 650
DdeI	CTNAG	2 cut(s)	184, 346
DpnI	GATC	5 cut(s)	72, 252, 257, 353, 473
DpnII	GATC	5 cut(s)	70, 250, 255, 351, 471
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	3 cut(s)	46, 289, 660
Eco88I	CYCGRG	2 cut(s)	200, 260
EcoRII	CCWGG	1 cut(s)	605
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	277, 314
FaiI	YATR	9 cut(s)	35, 69, 275, 296, 312, 379, 464, 665, 667
FatI	CATG	2 cut(s)	273, 310
FauI	CCCGC	1 cut(s)	511
FauNDI	CATATG	1 cut(s)	665
FbaI	TGATCA	1 cut(s)	250
FokI	GGATG	1 cut(s)	635
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	5 cut(s)	152, 201, 261, 415, 441
Hin1II	CATG	2 cut(s)	277, 314
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	5 cut(s)	152, 201, 261, 415, 441
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	3 cut(s)	255, 349, 585
Hpy188III	TCNNGA	3 cut(s)	404, 493, 593
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	241, 565
HpyCH4IV	ACGT	1 cut(s)	381
HpyCH4V	TGCA	4 cut(s)	167, 436, 557, 626
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	184, 346
HpySE526I	ACGT	1 cut(s)	381
Hsp92II	CATG	2 cut(s)	277, 314
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	5 cut(s)	70, 250, 255, 351, 471
LmnI	GCTCC	1 cut(s)	154
LweI	GCATC	2 cut(s)	154, 613
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	5 cut(s)	72, 252, 257, 353, 473
MboI	GATC	5 cut(s)	70, 250, 255, 351, 471
MboII	GAAGA	2 cut(s)	172, 387
MfeI	CAATTG	2 cut(s)	507, 552
MflI	RGATCY	2 cut(s)	255, 351
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	4 cut(s)	36, 498, 507, 552
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	600
MnlI	CCTC	3 cut(s)	336, 348, 591
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	2 cut(s)	243, 485
MslI	CAYNNNNRTG	3 cut(s)	339, 441, 467
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	5 cut(s)	152, 201, 261, 415, 441
MspR9I	CCNGG	7 cut(s)	152, 201, 202, 261, 262, 441, 607
MunI	CAATTG	2 cut(s)	507, 552
MvaI	CCWGG	1 cut(s)	607
MwoI	GCNNNNNNNGC	1 cut(s)	38
NciI	CCSGG	6 cut(s)	152, 201, 202, 261, 262, 441
NcoI	CCATGG	1 cut(s)	273
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	5 cut(s)	70, 250, 255, 351, 471
NlaIII	CATG	2 cut(s)	277, 314
NlaIV	GGNNCC	1 cut(s)	661
NmuCI	GTSAC	1 cut(s)	232
OliI	CACNNNNGTG	2 cut(s)	339, 441
PinAI	ACCGGT	1 cut(s)	414
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	605
PspGI	CCWGG	1 cut(s)	605
PspN4I	GGNNCC	1 cut(s)	661
PspPI	GGNCC	3 cut(s)	46, 289, 660
PsuI	RGATCY	2 cut(s)	255, 351
RseI	CAYNNNNRTG	3 cut(s)	339, 441, 467
SaqAI	TTAA	2 cut(s)	243, 485
Sau3AI	GATC	5 cut(s)	70, 250, 255, 351, 471
Sau96I	GGNCC	3 cut(s)	46, 289, 660
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	7 cut(s)	152, 201, 202, 261, 262, 441, 607
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	114, 140, 190, 328, 384, 600
SfaNI	GCATC	2 cut(s)	154, 613
SinI	GGWCC	3 cut(s)	46, 289, 660
SmaI	CCCGGG	2 cut(s)	202, 262
SmiMI	CAYNNNNRTG	3 cut(s)	339, 441, 467
Sse9I	AATT	4 cut(s)	36, 498, 507, 552
SsiI	CCGC	3 cut(s)	292, 308, 518
StyD4I	CCNGG	7 cut(s)	150, 199, 200, 259, 260, 439, 605
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	241, 565
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	2 cut(s)	162, 366
TasI	AATT	4 cut(s)	36, 498, 507, 552
Tru1I	TTAA	2 cut(s)	243, 485
Tru9I	TTAA	2 cut(s)	243, 485
TscAI	CASTG	2 cut(s)	244, 568
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspMI	CCCGGG	2 cut(s)	200, 260
TspRI	CASTG	2 cut(s)	244, 568
VpaK11BI	GGWCC	3 cut(s)	46, 289, 660
XapI	RAATTY	1 cut(s)	498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmaI	CCCGGG	2 cut(s)	200, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.