Rh2BG197800

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000366
Physical Location & Seq
Forward (+)
18058632 .. 18060013
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG197800.1

Sequence Viewer

Length: 696 bp
ATGATGATGAAAGGTGCTCATTTCCCTACAGCTGCTGCTTTTTCCCTATTGGCATTAGCAACCTTCCACCTTTTATCTGCCTCTGATCCTAGTCCTCTTCAAGATTTCTGTGTAGCACTTAACACCACCCAAACTGCTGTTTCTGCTGTGTTTGTGAATGGGAAATTCTGCAAGGACCCAAAGCTTGCAACAGCAGATGATTTCTTCTTTTCCGGGCTCCAGATTCTCCGAAACACATCAAATCCGGTTGGCTCTAAAGTCACCGCAGTTAATGTGGAGCAAATAGCAGGGCTGAACACTCTTGGGATATCCCTGGCTCGCATAGACTATGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTCGGGCCACGGAAATTCTTGTAGTCATGGAAGGCACTCTATACGTTGTCACATCTAACCCTGACAACCGCCTCTTCACCAAAGTGTTGAGCAAGGGAGATGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAATTCAACATTGGAGAGGTTAACGCCGTAGCCATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATCACCATAGCCAATGCAGTTTTCGGCTCCAACCCTCCAATCAACCCTGATGTTCTCAGCAAGGCCTTCCAAGTGGACAACAATATCGTTCAGTATCTCCAGAAACAGTTCTGGTACGACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

231

Amino Acids

24.81

Weight (kDa)

6.17

Isoelectric Point (pI)

24.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 76 - 219 6.5e-51 Cupin
Cupin_2 PF07883 108 - 179 5e-09 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 542
AciI CCGC 4 cut(s) 264, 342, 436, 540
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 2 cut(s) 164, 381
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 3 cut(s) 341, 369, 370
AgsI TTSAA 2 cut(s) 101, 508
AjnI CCWGG 2 cut(s) 312, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 2 cut(s) 32, 184
AluI AGCT 2 cut(s) 32, 184
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 494
AlwI GGATC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 35
Ama87I CYCGRG 1 cut(s) 369
AoxI GGCC 2 cut(s) 372, 630
ApeKI GCWGC 3 cut(s) 32, 35, 549
ApoI RAATTY 2 cut(s) 164, 381
Asp700I GAANNNNTTC 1 cut(s) 674
AspS9I GGNCC 2 cut(s) 175, 372
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 3 cut(s) 253, 436, 562
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 19, 22, 561
BceAI ACGGC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 314, 561
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 494
BfaI CTAG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 27
BisI GCNGC 4 cut(s) 33, 36, 540, 550
BlsI GCNGC 4 cut(s) 34, 37, 541, 551
Bme1390I CCNGG 3 cut(s) 214, 314, 561
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 2 cut(s) 175, 372
BmiI GGNNCC 3 cut(s) 177, 218, 595
BmrFI CCNGG 3 cut(s) 214, 314, 561
BmrI ACTGGG 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 2 cut(s) 203, 650
BpuMI CCSGG 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 3 cut(s) 312, 368, 375
BsaWI WCCGGW 1 cut(s) 244
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 369, 370
Bse1I ACTGG 1 cut(s) 482
Bse3DI GCAATG 1 cut(s) 534
BseBI CCWGG 2 cut(s) 314, 561
BseDI CCNNGG 3 cut(s) 312, 368, 375
BseLI CCNNNNNNNGG 3 cut(s) 341, 369, 370
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 637
BseNI ACTGG 1 cut(s) 482
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 3 cut(s) 19, 22, 561
BshFI GGCC 2 cut(s) 374, 632
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 2 cut(s) 213, 245
BslI CCNNNNNNNGG 3 cut(s) 341, 369, 370
BsmAI GTCTC 1 cut(s) 494
BsnI GGCC 2 cut(s) 374, 632
Bso31I GGTCTC 1 cut(s) 494
BsoBI CYCGRG 1 cut(s) 369
Bsp1286I GDGCHC 2 cut(s) 19, 219
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 4 cut(s) 264, 342, 436, 540
BspANI GGCC 2 cut(s) 374, 632
BspCNI CTCAG 1 cut(s) 636
BspLI GGNNCC 3 cut(s) 177, 218, 595
BspPI GGATC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 3 cut(s) 312, 368, 375
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 2 cut(s) 314, 561
Bst4CI ACNGT 1 cut(s) 675
Bst6I CTCTTC 2 cut(s) 102, 446
BstC8I GCNNGC 2 cut(s) 186, 319
BstDEI CTNAG 2 cut(s) 545, 623
BstDSI CCRYGG 1 cut(s) 375
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 494
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 2 cut(s) 143, 539
BstNI CCWGG 2 cut(s) 314, 561
BstSCI CCNGG 3 cut(s) 212, 312, 559
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 19, 22, 561
BstV2I GAAGAC 1 cut(s) 469
BsuRI GGCC 2 cut(s) 374, 632
BtgI CCRYGG 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 186, 319
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 2 cut(s) 175, 372
Csp6I GTAC 1 cut(s) 682
CviAII CATG 1 cut(s) 394
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 2 cut(s) 545, 623
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 2 cut(s) 102, 446
EarI CTCTTC 2 cut(s) 102, 446
EciI GGCGGA 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 494
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 312, 559
EcoRV GATATC 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 1 cut(s) 397
FaiI YATR 5 cut(s) 323, 330, 395, 409, 575
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 33, 36, 540, 550
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 4 cut(s) 33, 36, 540, 550
FspBI CTAG 1 cut(s) 90
GluI GCNGC 4 cut(s) 33, 36, 540, 550
GsuI CTGGAG 2 cut(s) 203, 650
HaeIII GGCC 2 cut(s) 374, 632
HapII CCGG 2 cut(s) 213, 245
Hin1II CATG 1 cut(s) 397
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 223, 556
HpaI GTTAAC 1 cut(s) 523
HpaII CCGG 2 cut(s) 213, 245
HphI GGTGA 3 cut(s) 253, 436, 562
Hpy166II GTNNAC 2 cut(s) 523, 643
Hpy188I TCNGA 2 cut(s) 85, 230
Hpy188III TCNNGA 3 cut(s) 101, 220, 667
Hpy8I GTNNAC 2 cut(s) 523, 643
HpyAV CCTTC 3 cut(s) 73, 392, 643
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 171, 188, 332, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 539
HpyF3I CTNAG 2 cut(s) 545, 623
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 397
KspAI GTTAAC 1 cut(s) 523
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 222, 277, 599
Lsp1109I GCAGC 3 cut(s) 19, 22, 561
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 259, 415
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 542
MboI GATC 1 cut(s) 85
MboII GAAGA 4 cut(s) 89, 196, 433, 469
MhlI GDGCHC 2 cut(s) 19, 219
MluCI AATT 4 cut(s) 164, 381, 503, 691
MmeI TCCRAC 1 cut(s) 621
MnlI CCTC 8 cut(s) 91, 105, 363, 366, 378, 449, 511, 612
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 4 cut(s) 120, 270, 522, 694
MslI CAYNNNNRTG 1 cut(s) 449
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 2 cut(s) 213, 245
MspR9I CCNGG 3 cut(s) 214, 314, 561
MvaI CCWGG 2 cut(s) 314, 561
MwoI GCNNNNNNNGC 2 cut(s) 143, 539
NciI CCSGG 1 cut(s) 214
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 3 cut(s) 177, 218, 595
NmuCI GTSAC 2 cut(s) 259, 415
OliI CACNNNNGTG 1 cut(s) 449
PceI AGGCCT 1 cut(s) 632
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 2 cut(s) 223, 556
PkrI GCNGC 4 cut(s) 34, 37, 541, 551
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 2 cut(s) 312, 559
PspGI CCWGG 2 cut(s) 312, 559
PspN4I GGNNCC 3 cut(s) 177, 218, 595
PspPI GGNCC 2 cut(s) 175, 372
PspPPI RGGWCCY 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 35
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 4 cut(s) 120, 270, 522, 694
SatI GCNGC 4 cut(s) 33, 36, 540, 550
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 2 cut(s) 175, 372
ScrFI CCNGG 3 cut(s) 214, 314, 561
SduI GDGCHC 2 cut(s) 19, 219
SetI ASST 8 cut(s) 16, 34, 65, 72, 186, 414, 522, 565
SfcI CTRYAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 449
Sse9I AATT 4 cut(s) 164, 381, 503, 691
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 4 cut(s) 264, 342, 436, 540
SspMI CTAG 1 cut(s) 90
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 3 cut(s) 212, 312, 559
TaaI ACNGT 1 cut(s) 675
TaiI ACGT 1 cut(s) 414
TasI AATT 4 cut(s) 164, 381, 503, 691
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 223, 556
Tru1I TTAA 4 cut(s) 120, 270, 522, 694
Tru9I TTAA 4 cut(s) 120, 270, 522, 694
TseFI GTSAC 2 cut(s) 259, 415
TseI GCWGC 3 cut(s) 32, 35, 549
Tsp45I GTSAC 2 cut(s) 259, 415
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 2 cut(s) 164, 381
XcmI CCANNNNNNNNNTGG 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.