Rh5DG244600

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000366
Physical Location & Seq
Reverse (-)
27959924 .. 27967749
7826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG244600.1

Sequence Viewer

Length: 693 bp
ATGAAAGGAGTTCATTTGCCTATTGCTACTCTTGCTCTCTTTGCATTGGCAACCTTCCTCGTTTCTGCCTCAGACCCCAGTCCTCTACAGGACTTCTGCGTAGCCATCAATAACGCACAGTTTTCCCAATTTCCTGGAGTGTTTGTGAATGGGAAGTTCTGCAAGGACCCAAAGCTTGCAACAGCAAATGATTTCTTCTTCTCTGGTCTCCAAATTCCAAAATCCACGGCAAACGCGGTTGGTTCAACCGTGACAGCCGTGAACGTGGAGCAAATCGCCGGATTGAACACCCTTGGGATATCCCTAGCTCGCATAGACTATGCACCAAATGGCGGTCTAAACCCTCCCCACACGCACCCTCGTGCCTCTGAAGTCCTTCTGGTCCTGGAAGGCACTCTCTACGTTGGCTTCGTCACCTCCAACCCCGATAACAAGCTGATCAGCAAGGTCTTGAACAAGGGAGATGTGTTTGTCTTCCCAGTAGGTCTCATTCACTTCCAACTTAACATCGGACCCGTCAATGCTGTAGCAATTGCTGCACTTAGCAGCCAGAACCCAGGGGTCATCACCATAGCCAATGCAGTTTTCGGGGCCAATCCTCCCATCAATCCTGATGTTTTAACCAAGGCGTTCCAAGTCGATGAAAAGCTCGTTCAGTATCTCCAGAAACAGTTCTGGTACAACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

230

Amino Acids

24.51

Weight (kDa)

6.89

Isoelectric Point (pI)

23.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 69 - 218 2.8e-51 Cupin
Cupin_2 PF07883 105 - 176 1.2e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 236
AciI CCGC 2 cut(s) 236, 333
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 1 cut(s) 680
AfiI CCNNNNNNNGG 1 cut(s) 332
AgsI TTSAA 3 cut(s) 246, 286, 454
AjnI CCWGG 3 cut(s) 133, 384, 556
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 4 cut(s) 175, 308, 436, 649
AluI AGCT 4 cut(s) 175, 308, 436, 649
Alw26I GTCTC 2 cut(s) 212, 491
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 536, 546
ApoI RAATTY 1 cut(s) 213
Asp700I GAANNNNTTC 2 cut(s) 375, 671
AspS9I GGNCC 4 cut(s) 166, 382, 512, 591
AsuHPI GGTGA 2 cut(s) 406, 559
AvaII GGWCC 3 cut(s) 166, 382, 512
BauI CACGAG 1 cut(s) 360
BbsI GAAGAC 1 cut(s) 466
BbvI GCAGC 2 cut(s) 523, 558
BccI CCATC 2 cut(s) 113, 611
BceAI ACGGC 2 cut(s) 242, 243
BciT130I CCWGG 3 cut(s) 135, 386, 558
BclI TGATCA 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 212, 491
BfaI CTAG 1 cut(s) 305
BfmI CTRYAG 2 cut(s) 86, 525
BisI GCNGC 2 cut(s) 537, 547
BlsI GCNGC 2 cut(s) 538, 548
Bme1390I CCNGG 3 cut(s) 135, 386, 558
Bme18I GGWCC 3 cut(s) 166, 382, 512
BmgT120I GGNCC 4 cut(s) 166, 382, 512, 591
BmiI GGNNCC 3 cut(s) 168, 514, 592
BmrFI CCNGG 3 cut(s) 135, 386, 558
BmrI ACTGGG 2 cut(s) 72, 473
BmuI ACTGGG 2 cut(s) 72, 473
BoxI GACNNNNGTC 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 466
BpmI CTGGAG 2 cut(s) 156, 647
BsaI GGTCTC 2 cut(s) 212, 491
BsaJI CCNNGG 5 cut(s) 225, 292, 556, 557, 624
BsaXI ACNNNNNCTCC 2 cut(s) 129, 159
Bsc4I CCNNNNNNNGG 1 cut(s) 332
Bse1I ACTGG 2 cut(s) 78, 479
BseBI CCWGG 3 cut(s) 135, 386, 558
BseDI CCNNGG 5 cut(s) 225, 292, 556, 557, 624
BseLI CCNNNNNNNGG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 2 cut(s) 78, 479
BseXI GCAGC 2 cut(s) 523, 558
BsgI GTGCAG 1 cut(s) 522
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 593
BsiSI CCGG 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 332
BsmAI GTCTC 2 cut(s) 212, 491
BsnI GGCC 1 cut(s) 593
Bso31I GGTCTC 2 cut(s) 212, 491
Bsp143I GATC 1 cut(s) 438
BspACI CCGC 2 cut(s) 236, 333
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 1 cut(s) 83
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 3 cut(s) 168, 514, 592
BspTNI GGTCTC 2 cut(s) 212, 491
BsrI ACTGG 2 cut(s) 78, 479
BssECI CCNNGG 5 cut(s) 225, 292, 556, 557, 624
BssMI GATC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 2 cut(s) 292, 624
Bst2BI CACGAG 1 cut(s) 360
Bst2UI CCWGG 3 cut(s) 135, 386, 558
Bst4CI ACNGT 3 cut(s) 120, 250, 672
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 2 cut(s) 177, 310
BstDEI CTNAG 2 cut(s) 70, 542
BstDSI CCRYGG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 1 cut(s) 441
BstMAI GTCTC 2 cut(s) 212, 491
BstMBI GATC 1 cut(s) 438
BstMWI GCNNNNNNNGC 3 cut(s) 32, 41, 536
BstNI CCWGG 3 cut(s) 135, 386, 558
BstPAI GACNNNNGTC 1 cut(s) 78
BstSCI CCNGG 3 cut(s) 133, 384, 556
BstSFI CTRYAG 2 cut(s) 86, 525
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 523, 558
BstV2I GAAGAC 1 cut(s) 466
BstXI CCANNNNNNTGG 1 cut(s) 134
BsuRI GGCC 1 cut(s) 593
BtgI CCRYGG 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 177, 310
Cfr13I GGNCC 4 cut(s) 166, 382, 512, 591
Csp6I GTAC 1 cut(s) 679
CviQI GTAC 1 cut(s) 679
DdeI CTNAG 2 cut(s) 70, 542
DpnI GATC 1 cut(s) 440
DpnII GATC 1 cut(s) 438
Eco130I CCWWGG 2 cut(s) 292, 624
Eco31I GGTCTC 2 cut(s) 212, 491
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 3 cut(s) 166, 382, 512
Eco57I CTGAAG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 166
EcoRII CCWGG 3 cut(s) 133, 384, 556
EcoRV GATATC 1 cut(s) 300
EcoT14I CCWWGG 2 cut(s) 292, 624
ErhI CCWWGG 2 cut(s) 292, 624
FaiI YATR 3 cut(s) 314, 321, 572
FbaI TGATCA 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 537, 547
Fsp4HI GCNGC 2 cut(s) 537, 547
FspBI CTAG 1 cut(s) 305
GluI GCNGC 2 cut(s) 537, 547
GsuI CTGGAG 2 cut(s) 156, 647
HaeIII GGCC 1 cut(s) 593
HapII CCGG 1 cut(s) 279
HindIII AAGCTT 1 cut(s) 173
HpaII CCGG 1 cut(s) 279
HphI GGTGA 2 cut(s) 406, 559
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 3 cut(s) 73, 370, 512
Hpy188III TCNNGA 3 cut(s) 451, 611, 664
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 3 cut(s) 64, 383, 386
HpyCH4III ACNGT 3 cut(s) 120, 250, 672
HpyCH4IV ACGT 2 cut(s) 264, 402
HpyCH4V TGCA 6 cut(s) 44, 162, 179, 323, 539, 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 41, 536
HpyF3I CTNAG 2 cut(s) 70, 542
HpySE526I ACGT 2 cut(s) 264, 402
Ksp22I TGATCA 1 cut(s) 438
Kzo9I GATC 1 cut(s) 438
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 523, 558
MaeI CTAG 1 cut(s) 305
MaeII ACGT 2 cut(s) 264, 402
MaeIII GTNAC 2 cut(s) 250, 412
MalI GATC 1 cut(s) 440
MboI GATC 1 cut(s) 438
MboII GAAGA 3 cut(s) 187, 190, 466
MfeI CAATTG 1 cut(s) 531
MluCI AATT 4 cut(s) 128, 213, 531, 688
MmeI TCCRAC 2 cut(s) 444, 523
MnlI CCTC 8 cut(s) 68, 79, 93, 354, 369, 376, 427, 609
MroXI GAANNNNTTC 2 cut(s) 375, 671
MseI TTAA 3 cut(s) 504, 620, 691
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 3 cut(s) 135, 386, 558
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 3 cut(s) 135, 386, 558
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 3 cut(s) 32, 41, 536
NdeII GATC 1 cut(s) 438
NlaIV GGNNCC 3 cut(s) 168, 514, 592
NmuCI GTSAC 2 cut(s) 250, 412
OliI CACNNNNGTG 1 cut(s) 360
PasI CCCWGGG 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 375, 671
PfoI TCCNGGA 2 cut(s) 133, 384
PkrI GCNGC 2 cut(s) 538, 548
PpuMI RGGWCCY 1 cut(s) 166
PshAI GACNNNNGTC 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 133, 384, 556
PspGI CCWGG 3 cut(s) 133, 384, 556
PspN4I GGNNCC 3 cut(s) 168, 514, 592
PspPI GGNCC 4 cut(s) 166, 382, 512, 591
PspPPI RGGWCCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 680
RsaNI GTAC 1 cut(s) 679
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 3 cut(s) 504, 620, 691
SatI GCNGC 2 cut(s) 537, 547
Sau3AI GATC 1 cut(s) 438
Sau96I GGNCC 4 cut(s) 166, 382, 512, 591
ScrFI CCNGG 3 cut(s) 135, 386, 558
SfcI CTRYAG 2 cut(s) 86, 525
SinI GGWCC 3 cut(s) 166, 382, 512
SmiMI CAYNNNNRTG 1 cut(s) 360
Sse9I AATT 4 cut(s) 128, 213, 531, 688
SsiI CCGC 2 cut(s) 236, 333
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 3 cut(s) 133, 384, 556
StyI CCWWGG 2 cut(s) 292, 624
TaaI ACNGT 3 cut(s) 120, 250, 672
TaiI ACGT 2 cut(s) 267, 405
TaqI TCGA 1 cut(s) 639
TasI AATT 4 cut(s) 128, 213, 531, 688
Tru1I TTAA 3 cut(s) 504, 620, 691
Tru9I TTAA 3 cut(s) 504, 620, 691
TseFI GTSAC 2 cut(s) 250, 412
TseI GCWGC 2 cut(s) 536, 546
Tsp45I GTSAC 2 cut(s) 250, 412
TspDTI ATGAA 2 cut(s) 17, 657
VpaK11BI GGWCC 3 cut(s) 166, 382, 512
XapI RAATTY 1 cut(s) 213
XmnI GAANNNNTTC 2 cut(s) 375, 671
XspI CTAG 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.