Rh7AG006500

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000366
Physical Location & Seq
Forward (+)
455722 .. 468577
12856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG006500.1

Sequence Viewer

Length: 720 bp
ATGATGAAAGGTGCTCATTTCCCTACAGCTGCTGCTTATTTCCCTACTGCTGCTGCTTTTGCCCTGTTGGCATTGGCAACCTTCCACCTTGTTTCTGCTTCTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACCCAAACTGCTGTTTCTGCTGTGTTTGTGAATGGGAGATTCTGCAAGGACCCAAAGAAGGTAACACCAGAGGATTTCTTCTTTTCCGGGCTCCGGATGCGTGGAAACACATCAAATCCGCTTGGTTCCATCGTCACCCAGGCGAATGTGCAGCAAATAGCAGGACTGAACACTCTTGGGGTATCCCTCGCTCGCATAGACTATGCACTTGGTGGACTAAACCCTCCTCACATCCACCCTCGGGCCACGGAAGTCCTTATGGTCATGGAAGGCACTCTCTACGTTGGCTTTGTCACATCCAACGATAACGGCAACCGTCTCTTCAGCAAAGTGTTGTACAAGGGAGATGTATTTGTCTTCCCATTTGCTCAAATTCACTTCCAGCTTAACATCGGAAAGGTCAACGCCGTAGCCATTTCCAGTTTTAGCAGCCAGTTTCCTGGTGTCACCACCATAGCCAATGCAGTGTTCGGCTCCAACCCTTCAATCAACCCTGATGTTCTCACCACCGCCTTCCAAGTTGACAAAAATGTCGTTCAGTATCTCCAGAACCAGTTCTGGTATGACAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

239

Amino Acids

25.85

Weight (kDa)

7.81

Isoelectric Point (pI)

20.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 78 - 228 2.1e-48 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 2 cut(s) 263, 654
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 516
AcuI CTGAAG 1 cut(s) 451
AdeI CACNNNGTG 1 cut(s) 356
AfaI GTAC 1 cut(s) 482
AfiI CCNNNNNNNGG 3 cut(s) 202, 237, 385
AgsI TTSAA 1 cut(s) 630
AjnI CCWGG 2 cut(s) 282, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AluBI AGCT 2 cut(s) 29, 529
AluI AGCT 2 cut(s) 29, 529
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 384
Aor13HI TCCGGA 1 cut(s) 237
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 6 cut(s) 29, 32, 50, 53, 295, 573
ApoI RAATTY 1 cut(s) 516
Asp700I GAANNNNTTC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 193, 387
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 271, 583, 640
AvaI CYCGRG 1 cut(s) 384
AvaII GGWCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 6 cut(s) 16, 19, 37, 40, 307, 585
BccI CCATC 1 cut(s) 281
BceAI ACGGC 2 cut(s) 469, 536
BciT130I CCWGG 2 cut(s) 284, 585
BciVI GTATCC 1 cut(s) 337
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 68
BisI GCNGC 6 cut(s) 30, 33, 51, 54, 296, 574
BlsI GCNGC 6 cut(s) 31, 34, 52, 55, 297, 575
Bme1390I CCNGG 3 cut(s) 232, 284, 585
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 193, 387
BmiI GGNNCC 4 cut(s) 195, 236, 271, 619
BmrFI CCNGG 3 cut(s) 232, 284, 585
BmsI GCATC 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 493
BpmI CTGGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 282, 383, 390
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 237, 385
Bse1I ACTGG 3 cut(s) 564, 577, 697
BseAI TCCGGA 1 cut(s) 237
BseBI CCWGG 2 cut(s) 284, 585
BseDI CCNNGG 3 cut(s) 282, 383, 390
BseGI GGATG 3 cut(s) 246, 375, 440
BseLI CCNNNNNNNGG 3 cut(s) 202, 237, 385
BseNI ACTGG 3 cut(s) 564, 577, 697
BseRI GAGGAG 1 cut(s) 360
BseXI GCAGC 6 cut(s) 16, 19, 37, 40, 307, 585
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 16
BsiHKCI CYCGRG 1 cut(s) 384
BsiSI CCGG 2 cut(s) 231, 238
BslI CCNNNNNNNGG 3 cut(s) 202, 237, 385
BsmAI GTCTC 1 cut(s) 467
BsmBI CGTCTC 1 cut(s) 467
BsnI GGCC 1 cut(s) 389
BsoBI CYCGRG 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 16, 237
Bsp13I TCCGGA 1 cut(s) 237
Bsp1407I TGTACA 1 cut(s) 480
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 263, 654
BspANI GGCC 1 cut(s) 389
BspEI TCCGGA 1 cut(s) 237
BspLI GGNNCC 4 cut(s) 195, 236, 271, 619
BspPI GGATC 1 cut(s) 98
BsrGI TGTACA 1 cut(s) 480
BsrI ACTGG 3 cut(s) 564, 577, 697
BssECI CCNNGG 3 cut(s) 282, 383, 390
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 284, 585
Bst4CI ACNGT 1 cut(s) 461
Bst6I CTCTTC 1 cut(s) 470
BstAUI TGTACA 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 337
BstDSI CCRYGG 1 cut(s) 390
BstF5I GGATG 3 cut(s) 246, 375, 440
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 4 cut(s) 59, 68, 161, 241
BstNI CCWGG 2 cut(s) 284, 585
BstSCI CCNGG 3 cut(s) 230, 282, 583
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 6 cut(s) 16, 19, 37, 40, 307, 585
BstV2I GAAGAC 1 cut(s) 493
BstXI CCANNNNNNTGG 1 cut(s) 584
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 389
BtgI CCRYGG 1 cut(s) 390
BtsCI GGATG 3 cut(s) 246, 375, 440
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 337
CaiI CAGNNNCTG 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 193, 387
Csp6I GTAC 1 cut(s) 481
CviAII CATG 1 cut(s) 409
CviJI RGCY 9 cut(s) 29, 235, 389, 432, 529, 557, 576, 602, 618
CviKI_1 RGCY 9 cut(s) 29, 235, 389, 432, 529, 557, 576, 602, 618
CviQI GTAC 1 cut(s) 481
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
DraIII CACNNNGTG 1 cut(s) 356
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 282, 583
EcoT38I GRGCYC 1 cut(s) 237
Esp3I CGTCTC 1 cut(s) 467
FaeI CATG 1 cut(s) 412
FaiI YATR 6 cut(s) 341, 348, 404, 410, 599, 708
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 6 cut(s) 30, 33, 51, 54, 296, 574
FokI GGATG 3 cut(s) 253, 362, 427
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 6 cut(s) 30, 33, 51, 54, 296, 574
FspBI CTAG 1 cut(s) 108
GluI GCNGC 6 cut(s) 30, 33, 51, 54, 296, 574
GsuI CTGGAG 1 cut(s) 674
HaeIII GGCC 1 cut(s) 389
HapII CCGG 2 cut(s) 231, 238
Hin1II CATG 1 cut(s) 412
HincII GTYRAC 2 cut(s) 547, 667
HindII GTYRAC 2 cut(s) 547, 667
HinfI GANTC 1 cut(s) 183
HpaII CCGG 2 cut(s) 231, 238
HphI GGTGA 3 cut(s) 271, 583, 640
Hpy166II GTNNAC 3 cut(s) 359, 547, 667
Hpy188I TCNGA 2 cut(s) 103, 539
Hpy188III TCNNGA 2 cut(s) 238, 691
Hpy8I GTNNAC 3 cut(s) 359, 547, 667
HpyAV CCTTC 5 cut(s) 91, 196, 407, 636, 667
HpyCH4III ACNGT 1 cut(s) 461
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 4 cut(s) 189, 295, 350, 608
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 68, 161, 241
HpySE526I ACGT 1 cut(s) 426
Hsp92II CATG 1 cut(s) 412
Kpn2I TCCGGA 1 cut(s) 237
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 240, 623
Lsp1109I GCAGC 6 cut(s) 16, 19, 37, 40, 307, 585
LweI GCATC 1 cut(s) 231
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 426
MaeIII GTNAC 4 cut(s) 205, 277, 436, 589
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 3 cut(s) 214, 457, 493
MhlI GDGCHC 2 cut(s) 16, 237
MluCI AATT 2 cut(s) 516, 715
MmeI TCCRAC 2 cut(s) 468, 645
MnlI CCTC 6 cut(s) 123, 208, 341, 378, 381, 393
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 698
MseI TTAA 3 cut(s) 138, 531, 718
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 231, 238
MspR9I CCNGG 3 cut(s) 232, 284, 585
MvaI CCWGG 2 cut(s) 284, 585
MwoI GCNNNNNNNGC 4 cut(s) 59, 68, 161, 241
NciI CCSGG 1 cut(s) 232
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 4 cut(s) 195, 236, 271, 619
NmuCI GTSAC 3 cut(s) 277, 436, 589
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 6 cut(s) 31, 34, 52, 55, 297, 575
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 282, 583
PspGI CCWGG 2 cut(s) 282, 583
PspN4I GGNNCC 4 cut(s) 195, 236, 271, 619
PspPI GGNCC 2 cut(s) 193, 387
PspPPI RGGWCCY 1 cut(s) 193
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 482
RsaNI GTAC 1 cut(s) 481
SaqAI TTAA 3 cut(s) 138, 531, 718
SatI GCNGC 6 cut(s) 30, 33, 51, 54, 296, 574
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 193, 387
ScrFI CCNGG 3 cut(s) 232, 284, 585
SduI GDGCHC 2 cut(s) 16, 237
SetI ASST 8 cut(s) 13, 31, 83, 90, 207, 429, 531, 546
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 193
Sse9I AATT 2 cut(s) 516, 715
SsiI CCGC 2 cut(s) 263, 654
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 230, 282, 583
TaaI ACNGT 1 cut(s) 461
TaiI ACGT 1 cut(s) 429
TasI AATT 2 cut(s) 516, 715
TatI WGTACW 1 cut(s) 480
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 3 cut(s) 138, 531, 718
Tru9I TTAA 3 cut(s) 138, 531, 718
TscAI CASTG 1 cut(s) 615
TseFI GTSAC 3 cut(s) 277, 436, 589
TseI GCWGC 6 cut(s) 29, 32, 50, 53, 295, 573
Tsp45I GTSAC 3 cut(s) 277, 436, 589
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 193
XapI RAATTY 1 cut(s) 516
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.