Rh1BG223100

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000366
Physical Location & Seq
Forward (+)
34209830 .. 34210650
821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG223100.1

Sequence Viewer

Length: 696 bp
ATGATGATGAAAGGTGCTCATTTCCCTACAACTGCTGCTTTTGCCCTATTGGCATTGGCAACCTTCCAGCTTGTATCTGCCTCTGATCCTAGTCCTCTCCAAGATTTCTGTGTAGCACTTAACACCACACAAACTGTTGTTTCTGCCGTGTTTGTGAATGGAAAATTCTGCAGGGACCCAAAGCTTGCAACAGCAGATGATTTCTTCTTTCCCGGGCTCCGGAATCCTGGAAACACATCAAATCCGCTAGGTTCCAAAGTCTCCCCAGCTAATGTGGAGCAAATAGCAGGGCTGAACACTCTTGGGATATCCCTGGCTCGCATAGACTTTGCACCAAATGGCGGACTAAACCCTCCTCACACCCACCCTCGAGCCACGGAAGTCCTTATGGTCATGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCGATAACCGCCTCTTCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTCTTCCCAGTTGGTCTCATTCACTTCCAGTTCAACATCGGAAAGGATAAAGCCGTAGCCATTGCCGCTCTTAGCAGCCAGAATCCAGGTGTCATCACCATAGCCAATGCAGTGTTCGGCTCCAACCCTCCAATCAACCTTGATGTTCTCACCAAGGCCTTCCAAGTTGACAACAATGTCGTTCAGTATCTCCAGAAACAGTTCTGGTATGATAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

231

Amino Acids

24.9

Weight (kDa)

6.89

Isoelectric Point (pI)

20.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 72 - 220 2.7e-53 Cupin
Cupin_2 PF07883 108 - 179 8.8e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 650
AccBSI CCGCTC 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 219
AciI CCGC 4 cut(s) 245, 342, 436, 540
AclWI GGATC 1 cut(s) 80
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 2 cut(s) 219, 341
AgsI TTSAA 1 cut(s) 508
AjnI CCWGG 3 cut(s) 226, 312, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AleI CACNNNNGTG 1 cut(s) 449
AluBI AGCT 3 cut(s) 70, 184, 269
AluI AGCT 3 cut(s) 70, 184, 269
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 265, 494
AlwI GGATC 1 cut(s) 80
Ama87I CYCGRG 2 cut(s) 212, 369
Aor13HI TCCGGA 1 cut(s) 219
AoxI GGCC 1 cut(s) 630
ApeKI GCWGC 2 cut(s) 35, 549
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 674
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 213, 214
AsuHPI GGTGA 3 cut(s) 436, 562, 616
AvaI CYCGRG 2 cut(s) 212, 369
AvaII GGWCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 22, 561
BceAI ACGGC 2 cut(s) 131, 512
BciT130I CCWGG 3 cut(s) 228, 314, 561
BcnI CCSGG 2 cut(s) 213, 214
BcoDI GTCTC 2 cut(s) 265, 494
BfaI CTAG 2 cut(s) 90, 248
BfmI CTRYAG 1 cut(s) 169
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 3 cut(s) 36, 540, 550
BlsI GCNGC 3 cut(s) 37, 541, 551
Bme1390I CCNGG 5 cut(s) 213, 214, 228, 314, 561
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 2 cut(s) 212, 369
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 5 cut(s) 176, 177, 218, 253, 595
BmrFI CCNGG 5 cut(s) 213, 214, 228, 314, 561
BmrI ACTGGG 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 476
BpiI GAAGAC 1 cut(s) 469
BpmI CTGGAG 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 213, 214
BsaI GGTCTC 1 cut(s) 494
BsaJI CCNNGG 4 cut(s) 212, 312, 375, 627
BsaWI WCCGGW 1 cut(s) 219
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 341
Bse1I ACTGG 2 cut(s) 482, 502
Bse3DI GCAATG 1 cut(s) 534
BseAI TCCGGA 1 cut(s) 219
BseBI CCWGG 3 cut(s) 228, 314, 561
BseDI CCNNGG 4 cut(s) 212, 312, 375, 627
BseGI GGATG 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 219, 341
BseMI GCAATG 1 cut(s) 534
BseNI ACTGG 2 cut(s) 482, 502
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 2 cut(s) 22, 561
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 1 cut(s) 632
BsiHKAI GWGCWC 1 cut(s) 19
BsiHKCI CYCGRG 2 cut(s) 212, 369
BsiSI CCGG 2 cut(s) 213, 220
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 219, 341
BsmAI GTCTC 2 cut(s) 265, 494
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 632
Bso31I GGTCTC 1 cut(s) 494
BsoBI CYCGRG 2 cut(s) 212, 369
Bsp1286I GDGCHC 2 cut(s) 19, 219
Bsp13I TCCGGA 1 cut(s) 219
Bsp1407I TGTACA 1 cut(s) 456
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 4 cut(s) 245, 342, 436, 540
BspANI GGCC 1 cut(s) 632
BspEI TCCGGA 1 cut(s) 219
BspLI GGNNCC 5 cut(s) 176, 177, 218, 253, 595
BspMAI CTGCAG 1 cut(s) 173
BspPI GGATC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 494
BsrBI CCGCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 534
BsrGI TGTACA 1 cut(s) 456
BsrI ACTGG 2 cut(s) 482, 502
BssECI CCNNGG 4 cut(s) 212, 312, 375, 627
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 627
Bst2UI CCWGG 3 cut(s) 228, 314, 561
Bst4CI ACNGT 2 cut(s) 136, 675
Bst6I CTCTTC 1 cut(s) 446
BstAUI TGTACA 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 186, 319
BstDEI CTNAG 1 cut(s) 545
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 425
BstKTI GATC 1 cut(s) 88
BstMAI GTCTC 2 cut(s) 265, 494
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 41, 50, 539
BstNI CCWGG 3 cut(s) 228, 314, 561
BstSCI CCNGG 5 cut(s) 211, 212, 226, 312, 559
BstSFI CTRYAG 1 cut(s) 169
BstV1I GCAGC 2 cut(s) 22, 561
BstV2I GAAGAC 1 cut(s) 469
BsuRI GGCC 1 cut(s) 632
BtgI CCRYGG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 425
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 1 cut(s) 591
Cac8I GCNNGC 2 cut(s) 186, 319
Cfr13I GGNCC 1 cut(s) 175
Cfr9I CCCGGG 1 cut(s) 212
Csp6I GTAC 1 cut(s) 457
CviAII CATG 1 cut(s) 394
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 545
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DrdI GACNNNNNNGTC 1 cut(s) 650
DseDI GACNNNNNNGTC 1 cut(s) 650
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
EciI GGCGGA 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 627
Eco147I AGGCCT 1 cut(s) 632
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 494
Eco32I GATATC 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 2 cut(s) 212, 369
EcoO109I RGGNCCY 1 cut(s) 175
EcoRII CCWGG 3 cut(s) 226, 312, 559
EcoRV GATATC 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 1 cut(s) 397
FaiI YATR 5 cut(s) 323, 389, 395, 575, 684
FaqI GGGAC 1 cut(s) 188
FatI CATG 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 36, 540, 550
FokI GGATG 1 cut(s) 412
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 3 cut(s) 36, 540, 550
FspBI CTAG 2 cut(s) 90, 248
GluI GCNGC 3 cut(s) 36, 540, 550
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 1 cut(s) 632
HapII CCGG 2 cut(s) 213, 220
Hin1II CATG 1 cut(s) 397
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 223, 556
HpaII CCGG 2 cut(s) 213, 220
HphI GGTGA 3 cut(s) 436, 562, 616
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 3 cut(s) 85, 430, 515
Hpy188III TCNNGA 2 cut(s) 220, 667
Hpy8I GTNNAC 1 cut(s) 643
HpyAV CCTTC 3 cut(s) 73, 392, 643
HpyCH4III ACNGT 2 cut(s) 136, 675
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 4 cut(s) 171, 188, 332, 584
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 50, 539
HpyF3I CTNAG 1 cut(s) 545
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 397
KflI GGGWCCC 1 cut(s) 175
Kpn2I TCCGGA 1 cut(s) 219
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 3 cut(s) 222, 277, 599
Lsp1109I GCAGC 2 cut(s) 22, 561
MaeI CTAG 2 cut(s) 90, 248
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 421
MalI GATC 1 cut(s) 87
MbiI CCGCTC 1 cut(s) 542
MboI GATC 1 cut(s) 85
MboII GAAGA 3 cut(s) 196, 433, 469
MhlI GDGCHC 2 cut(s) 19, 219
MluCI AATT 2 cut(s) 164, 691
MmeI TCCRAC 1 cut(s) 621
MnlI CCTC 7 cut(s) 91, 105, 363, 366, 378, 449, 612
MroI TCCGGA 1 cut(s) 219
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 2 cut(s) 120, 694
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 2 cut(s) 213, 220
MspR9I CCNGG 5 cut(s) 213, 214, 228, 314, 561
MvaI CCWGG 3 cut(s) 228, 314, 561
MwoI GCNNNNNNNGC 3 cut(s) 41, 50, 539
NciI CCSGG 2 cut(s) 213, 214
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 397
NlaIV GGNNCC 5 cut(s) 176, 177, 218, 253, 595
NmuCI GTSAC 1 cut(s) 421
OliI CACNNNNGTG 1 cut(s) 449
PaeR7I CTCGAG 1 cut(s) 369
PceI AGGCCT 1 cut(s) 632
PcsI WCGNNNNNNNCGW 2 cut(s) 417, 426
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 2 cut(s) 223, 556
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 3 cut(s) 37, 541, 551
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
Psp6I CCWGG 3 cut(s) 226, 312, 559
PspFI CCCAGC 1 cut(s) 265
PspGI CCWGG 3 cut(s) 226, 312, 559
PspN4I GGNNCC 5 cut(s) 176, 177, 218, 253, 595
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 369
PstI CTGCAG 1 cut(s) 173
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 2 cut(s) 120, 694
SatI GCNGC 3 cut(s) 36, 540, 550
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 175
ScrFI CCNGG 5 cut(s) 213, 214, 228, 314, 561
SduI GDGCHC 2 cut(s) 19, 219
SetI ASST 9 cut(s) 16, 65, 72, 186, 253, 271, 414, 565, 615
SfcI CTRYAG 1 cut(s) 169
Sfr274I CTCGAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 369
SmaI CCCGGG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 2 cut(s) 164, 691
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 4 cut(s) 245, 342, 436, 540
SspMI CTAG 2 cut(s) 90, 248
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 5 cut(s) 211, 212, 226, 312, 559
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 2 cut(s) 136, 675
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 370
TasI AATT 2 cut(s) 164, 691
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 2 cut(s) 223, 556
Tru1I TTAA 2 cut(s) 120, 694
Tru9I TTAA 2 cut(s) 120, 694
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 2 cut(s) 35, 549
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 392
TspMI CCCGGG 1 cut(s) 212
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 369
XmaI CCCGGG 1 cut(s) 212
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 2 cut(s) 90, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.