pycom06g21150

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000366
Physical Location & Seq
Reverse (-)
23893418 .. 23894818
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g21150.1

Sequence Viewer

Length: 690 bp
ATGAAAGGAGTTCATTTCCCTGTTATTGCTGTTGCCCTATTAGCTAGCATTAGCATTCGCCATCCTCTTGCCTCTGCCTCTGATCCTAGTCCTCTTCAGGACTTATGCATAGTAATTAATAACACTCATTTTGCTGTATTTGTGAACGGGAAGTTCTGCAAGGACCCAAAACTTGCATCAGCAGATGATTTTTTCTCTGACAAGCTCCGGTACCCCCAAAACACATCGAATCCGGTTGGTTCAATTGTTACGGCTGCGAACGTAGACGATACACCCGGACTCAACACTCTCGGCATATCCTTTGCTCGCTTAGACTTTGTACCAAATGGCCTCAATCCTCCTCACACTCGCCCTCGTGCCACGGAGATACTCACAGTCTTGGAAGGCTCACTCTACGTCGGATTCGTCACATCCAATGGCGACGGCAATCGACTGTTCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTGTTCCCAGTCGGTCTCATTCACTTCCAACTCAATGTCGGAAAAACCAACGCTTTGGCCATCGCGGGTCTCAGGAGCCAGAACCCGGGAGTGATCTCTATCGCGAATGCGGTCTTCGGATCCAACCCTCCCATCAACCCTGATGTTTTGGCCAAGGCATTCCAGGTGGACGATAATATGGTTAATTATCTTCAGAAACAATTTTGGTACAACAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

230

Amino Acids

24.78

Weight (kDa)

7.82

Isoelectric Point (pI)

17.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 69 - 217 2.2e-52 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 264
AccII CGCG 2 cut(s) 533, 572
AciI CCGC 2 cut(s) 533, 578
AclWI GGATC 3 cut(s) 77, 582, 595
AcoI YGGCCR 2 cut(s) 525, 618
AcuI CTGAAG 2 cut(s) 80, 644
AfaI GTAC 4 cut(s) 212, 321, 452, 677
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 1 cut(s) 243
AjnI CCWGG 1 cut(s) 630
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 2 cut(s) 44, 205
AluI AGCT 2 cut(s) 44, 205
Alw26I GTCTC 2 cut(s) 488, 542
AlwI GGATC 3 cut(s) 77, 582, 595
Ama87I CYCGRG 1 cut(s) 553
AoxI GGCC 3 cut(s) 328, 525, 618
ApeKI GCWGC 1 cut(s) 254
AseI ATTAAT 1 cut(s) 117
Asp718I GGTACC 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 3 cut(s) 276, 554, 555
AsuHPI GGTGA 1 cut(s) 430
AsuNHI GCTAGC 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 163
BalI TGGCCA 2 cut(s) 527, 620
BamHI GGATCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 210
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 574
BbvI GCAGC 1 cut(s) 241
BccI CCATC 3 cut(s) 69, 536, 608
BceAI ACGGC 2 cut(s) 267, 439
BciT130I CCWGG 1 cut(s) 632
BcnI CCSGG 3 cut(s) 276, 554, 555
BcoDI GTCTC 2 cut(s) 488, 542
BfaI CTAG 2 cut(s) 45, 87
BisI GCNGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 4 cut(s) 276, 554, 555, 632
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 4 cut(s) 165, 212, 545, 589
BmrFI CCNGG 4 cut(s) 276, 554, 555, 632
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 185
BmtI GCTAGC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 574
BpuMI CCSGG 3 cut(s) 276, 554, 555
BsaBI GATNNNNATC 1 cut(s) 566
BsaI GGTCTC 2 cut(s) 488, 542
BsaJI CCNNGG 3 cut(s) 360, 553, 621
BsaWI WCCGGW 2 cut(s) 207, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 476
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 3 cut(s) 360, 553, 621
BseGI GGATG 2 cut(s) 61, 410
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 476
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 2 cut(s) 533, 572
BshFI GGCC 3 cut(s) 330, 527, 620
BshNI GGYRCC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 4 cut(s) 208, 233, 276, 554
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 2 cut(s) 488, 542
BsmI GAATGC 3 cut(s) 54, 580, 626
BsnI GGCC 3 cut(s) 330, 527, 620
Bso31I GGTCTC 2 cut(s) 488, 542
BsoBI CYCGRG 1 cut(s) 553
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 3 cut(s) 82, 561, 587
Bsp68I TCGCGA 1 cut(s) 572
BspACI CCGC 2 cut(s) 533, 578
BspANI GGCC 3 cut(s) 330, 527, 620
BspCNI CTCAG 1 cut(s) 552
BspFNI CGCG 2 cut(s) 533, 572
BspLI GGNNCC 4 cut(s) 165, 212, 545, 589
BspOI GCTAGC 1 cut(s) 48
BspPI GGATC 3 cut(s) 77, 582, 595
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 488, 542
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 3 cut(s) 360, 553, 621
BssMI GATC 3 cut(s) 82, 561, 587
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 2 cut(s) 376, 435
Bst6I CTCTTC 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 2 cut(s) 46, 307
BstDEI CTNAG 2 cut(s) 310, 539
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 61, 410
BstFNI CGCG 2 cut(s) 533, 572
BstKTI GATC 3 cut(s) 85, 564, 590
BstMAI GTCTC 2 cut(s) 488, 542
BstMBI GATC 3 cut(s) 82, 561, 587
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 632
BstSCI CCNGG 4 cut(s) 274, 552, 553, 630
BstUI CGCG 2 cut(s) 533, 572
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 1 cut(s) 587
BstXI CCANNNNNNTGG 1 cut(s) 523
BstYI RGATCY 1 cut(s) 587
BsuRI GGCC 3 cut(s) 330, 527, 620
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 61, 410
BtuMI TCGCGA 1 cut(s) 572
Cac8I GCNNGC 2 cut(s) 46, 307
Cfr13I GGNCC 1 cut(s) 163
Cfr9I CCCGGG 1 cut(s) 553
Csp6I GTAC 4 cut(s) 211, 320, 451, 676
CviJI RGCY 8 cut(s) 44, 205, 254, 330, 387, 527, 546, 620
CviKI_1 RGCY 8 cut(s) 44, 205, 254, 330, 387, 527, 546, 620
CviQI GTAC 4 cut(s) 211, 320, 451, 676
DdeI CTNAG 2 cut(s) 310, 539
DpnI GATC 3 cut(s) 84, 563, 589
DpnII GATC 3 cut(s) 82, 561, 587
EaeI YGGCCR 2 cut(s) 525, 618
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 488, 542
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 80, 644
Eco88I CYCGRG 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 1 cut(s) 621
EcoT22I ATGCAT 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 621
FaiI YATR 4 cut(s) 106, 110, 296, 647
FauI CCCGC 1 cut(s) 526
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 2 cut(s) 48, 397
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 2 cut(s) 45, 87
GluI GCNGC 1 cut(s) 255
HaeIII GGCC 3 cut(s) 330, 527, 620
HapII CCGG 4 cut(s) 208, 233, 276, 554
HinfI GANTC 3 cut(s) 229, 279, 402
HpaII CCGG 4 cut(s) 208, 233, 276, 554
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 4 cut(s) 145, 265, 438, 637
Hpy188I TCNGA 6 cut(s) 82, 199, 401, 509, 587, 663
Hpy188III TCNNGA 3 cut(s) 98, 541, 571
Hpy8I GTNNAC 4 cut(s) 145, 265, 438, 637
Hpy99I CGWCG 2 cut(s) 401, 425
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 376, 435
HpyCH4IV ACGT 2 cut(s) 261, 396
HpyCH4V TGCA 3 cut(s) 108, 159, 176
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 310, 539
HpySE526I ACGT 2 cut(s) 261, 396
KpnI GGTACC 1 cut(s) 214
Kzo9I GATC 3 cut(s) 82, 561, 587
LmnI GCTCC 2 cut(s) 210, 543
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 185
MaeI CTAG 2 cut(s) 45, 87
MaeII ACGT 2 cut(s) 261, 396
MaeIII GTNAC 2 cut(s) 247, 406
MalI GATC 3 cut(s) 84, 563, 589
MboI GATC 3 cut(s) 82, 561, 587
MboII GAAGA 3 cut(s) 86, 574, 650
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 1 cut(s) 587
MlsI TGGCCA 2 cut(s) 527, 620
MluCI AATT 4 cut(s) 114, 243, 652, 668
MluNI TGGCCA 2 cut(s) 527, 620
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 4 cut(s) 379, 487, 520, 615
MnlI CCTC 9 cut(s) 75, 82, 88, 102, 341, 348, 351, 363, 606
Mox20I TGGCCA 2 cut(s) 527, 620
Mph1103I ATGCAT 1 cut(s) 110
MscI TGGCCA 2 cut(s) 527, 620
MseI TTAA 3 cut(s) 117, 651, 688
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 2 cut(s) 527, 620
MspI CCGG 4 cut(s) 208, 233, 276, 554
MspR9I CCNGG 4 cut(s) 276, 554, 555, 632
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 3 cut(s) 54, 580, 626
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 2 cut(s) 533, 572
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 3 cut(s) 276, 554, 555
NdeII GATC 3 cut(s) 82, 561, 587
NheI GCTAGC 1 cut(s) 44
NlaIV GGNNCC 4 cut(s) 165, 212, 545, 589
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 406
NruI TCGCGA 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 110
OliI CACNNNNGTG 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PctI GAATGC 3 cut(s) 54, 580, 626
PfeI GAWTC 2 cut(s) 229, 402
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PpuMI RGGWCCY 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 4 cut(s) 165, 212, 545, 589
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PsuI RGATCY 1 cut(s) 587
RruI TCGCGA 1 cut(s) 572
RsaI GTAC 4 cut(s) 212, 321, 452, 677
RsaNI GTAC 4 cut(s) 211, 320, 451, 676
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 3 cut(s) 117, 651, 688
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 3 cut(s) 82, 561, 587
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 4 cut(s) 276, 554, 555, 632
SetI ASST 5 cut(s) 46, 207, 264, 399, 636
SfaNI GCATC 1 cut(s) 185
SinI GGWCC 1 cut(s) 163
SmaI CCCGGG 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 443
Sse9I AATT 4 cut(s) 114, 243, 652, 668
SsiI CCGC 2 cut(s) 533, 578
SspMI CTAG 2 cut(s) 45, 87
StyD4I CCNGG 4 cut(s) 274, 552, 553, 630
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 376, 435
TaiI ACGT 2 cut(s) 264, 399
TaqI TCGA 2 cut(s) 227, 430
TaqII GACCGA 1 cut(s) 470
TasI AATT 4 cut(s) 114, 243, 652, 668
TatI WGTACW 1 cut(s) 450
TfiI GAWTC 2 cut(s) 229, 402
Tru1I TTAA 3 cut(s) 117, 651, 688
Tru9I TTAA 3 cut(s) 117, 651, 688
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 377
TspMI CCCGGG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 117
XmaI CCCGGG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 2 cut(s) 45, 87
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.