Rmu_sc0011424.1_g000017

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011424.1
OG0000366
Physical Location & Seq
Forward (+)
59875 .. 60701
827 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011424.1_g000017.1.cds

Sequence Viewer

Length: 699 bp
atgatgaaagttgctcattgccctacagctgctgcttttgccctattggcattggcaaccttccaccttgtctctgcctttgatcctagtcctctccaagatttctgtgtagcacttaacaccaccaacactgctatttctgctgtgtttgtgaatgggagattctgcaaggacccaaagatggtaacaccagaggacttcttcttttccgggctccggatgcgtggaaacacatcaaatccgcttggttccatcgtcacccaggccaatgtgcagcaaatagcaggactgaacactcttggggtatccctcgctcgaatagactatgcattaggtggactaaaccctcctcacatccaccctcgggccacggaagtccttatggtcatggaaggcactctgtacgttggcttcgtcacatccaatgataacggcaaccgcctcttcagcaaagtgttgtacaagggagatgtgtttgtcttcccatttgctcaaattcacttccagcttaacatcggaaaggtcaacgccgtagccatttccagttttagcagccagtttcctggtgtcaccaccatagccaaagcagtgttcggctccaacccgtcaatcaaccctgatgttctcaccaaggccttccaagttgacaaaaatgtcgttcagtatctccagaaccagttctggtatgacaacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

232

Amino Acids

25.23

Weight (kDa)

8.45

Isoelectric Point (pI)

22.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 653
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 2 cut(s) 242, 439
AclWI GGATC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 495
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 2 cut(s) 404, 461
AfiI CCNNNNNNNGG 3 cut(s) 181, 216, 364
AjnI CCWGG 2 cut(s) 261, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 2 cut(s) 29, 508
AluI AGCT 2 cut(s) 29, 508
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 363
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 3 cut(s) 264, 366, 633
ApeKI GCWGC 4 cut(s) 29, 32, 274, 552
ApoI RAATTY 1 cut(s) 495
Asp700I GAANNNNTTC 1 cut(s) 677
AspS9I GGNCC 2 cut(s) 172, 366
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 3 cut(s) 250, 562, 619
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 395, 427
BbsI GAAGAC 1 cut(s) 472
BbvI GCAGC 4 cut(s) 16, 19, 286, 564
BccI CCATC 2 cut(s) 175, 260
BceAI ACGGC 2 cut(s) 448, 515
BciT130I CCWGG 2 cut(s) 263, 564
BciVI GTATCC 1 cut(s) 316
BcnI CCSGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 76
BfaI CTAG 1 cut(s) 87
BfmI CTRYAG 1 cut(s) 24
BfuI GTATCC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 4 cut(s) 30, 33, 275, 553
BlsI GCNGC 4 cut(s) 31, 34, 276, 554
Bme1390I CCNGG 3 cut(s) 211, 263, 564
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 172, 366
BmiI GGNNCC 4 cut(s) 174, 215, 250, 598
BmrFI CCNGG 3 cut(s) 211, 263, 564
BmsI GCATC 1 cut(s) 210
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 211
BsaJI CCNNGG 4 cut(s) 261, 362, 369, 630
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 216, 364
Bse1I ACTGG 3 cut(s) 543, 556, 676
Bse3DI GCAATG 1 cut(s) 16
BseAI TCCGGA 1 cut(s) 216
BseBI CCWGG 2 cut(s) 263, 564
BseDI CCNNGG 4 cut(s) 261, 362, 369, 630
BseGI GGATG 3 cut(s) 225, 354, 419
BseLI CCNNNNNNNGG 3 cut(s) 181, 216, 364
BseMI GCAATG 1 cut(s) 16
BseNI ACTGG 3 cut(s) 543, 556, 676
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 4 cut(s) 16, 19, 286, 564
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 3 cut(s) 266, 368, 635
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 2 cut(s) 210, 217
BslI CCNNNNNNNGG 3 cut(s) 181, 216, 364
BsmAI GTCTC 1 cut(s) 76
BsnI GGCC 3 cut(s) 266, 368, 635
BsoBI CYCGRG 1 cut(s) 363
Bsp1286I GDGCHC 1 cut(s) 216
Bsp13I TCCGGA 1 cut(s) 216
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 2 cut(s) 242, 439
BspANI GGCC 3 cut(s) 266, 368, 635
BspEI TCCGGA 1 cut(s) 216
BspLI GGNNCC 4 cut(s) 174, 215, 250, 598
BspPI GGATC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 3 cut(s) 543, 556, 676
BssECI CCNNGG 4 cut(s) 261, 362, 369, 630
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 263, 564
Bst6I CTCTTC 1 cut(s) 449
BstAUI TGTACA 1 cut(s) 459
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 3 cut(s) 225, 354, 419
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 38, 47, 140, 220, 447
BstNI CCWGG 2 cut(s) 263, 564
BstSCI CCNGG 3 cut(s) 209, 261, 562
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 4 cut(s) 16, 19, 286, 564
BstV2I GAAGAC 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 563
BsuI GTATCC 1 cut(s) 316
BsuRI GGCC 3 cut(s) 266, 368, 635
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 3 cut(s) 225, 354, 419
BtsI GCAGTG 2 cut(s) 129, 594
BtsIMutI CAGTG 2 cut(s) 129, 594
CaiI CAGNNNCTG 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 172, 366
Csp6I GTAC 2 cut(s) 403, 460
CviAII CATG 1 cut(s) 388
CviQI GTAC 2 cut(s) 403, 460
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
DrdI GACNNNNNNGTC 1 cut(s) 653
DseDI GACNNNNNNGTC 1 cut(s) 653
Eam1104I CTCTTC 1 cut(s) 449
EarI CTCTTC 1 cut(s) 449
Eco130I CCWWGG 1 cut(s) 630
Eco147I AGGCCT 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 363
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 2 cut(s) 261, 562
EcoT14I CCWWGG 1 cut(s) 630
EcoT22I ATGCAT 1 cut(s) 331
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 630
FaeI CATG 1 cut(s) 391
FaiI YATR 5 cut(s) 327, 383, 389, 578, 687
FatI CATG 1 cut(s) 387
Fnu4HI GCNGC 4 cut(s) 30, 33, 275, 553
FokI GGATG 3 cut(s) 232, 341, 406
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 4 cut(s) 30, 33, 275, 553
FspBI CTAG 1 cut(s) 87
GluI GCNGC 4 cut(s) 30, 33, 275, 553
GsuI CTGGAG 1 cut(s) 653
HaeIII GGCC 3 cut(s) 266, 368, 635
HapII CCGG 2 cut(s) 210, 217
Hin1II CATG 1 cut(s) 391
HincII GTYRAC 2 cut(s) 526, 646
HindII GTYRAC 2 cut(s) 526, 646
HinfI GANTC 1 cut(s) 162
HpaII CCGG 2 cut(s) 210, 217
HphI GGTGA 3 cut(s) 250, 562, 619
Hpy166II GTNNAC 3 cut(s) 338, 526, 646
Hpy188I TCNGA 1 cut(s) 518
Hpy188III TCNNGA 2 cut(s) 217, 670
Hpy8I GTNNAC 3 cut(s) 338, 526, 646
HpyAV CCTTC 3 cut(s) 70, 386, 646
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 3 cut(s) 168, 274, 329
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 47, 140, 220, 447
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 1 cut(s) 391
Kpn2I TCCGGA 1 cut(s) 216
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 219, 602
Lsp1109I GCAGC 4 cut(s) 16, 19, 286, 564
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 87
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 4 cut(s) 184, 256, 415, 568
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 3 cut(s) 193, 436, 472
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 2 cut(s) 495, 694
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 7 cut(s) 102, 187, 320, 357, 360, 372, 452
Mph1103I ATGCAT 1 cut(s) 331
MroI TCCGGA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 677
MseI TTAA 3 cut(s) 117, 510, 697
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 210, 217
MspR9I CCNGG 3 cut(s) 211, 263, 564
MvaI CCWGG 2 cut(s) 263, 564
MwoI GCNNNNNNNGC 5 cut(s) 38, 47, 140, 220, 447
NciI CCSGG 1 cut(s) 211
NdeII GATC 1 cut(s) 82
NlaIII CATG 1 cut(s) 391
NlaIV GGNNCC 4 cut(s) 174, 215, 250, 598
NmuCI GTSAC 3 cut(s) 256, 415, 568
NsiI ATGCAT 1 cut(s) 331
PceI AGGCCT 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 677
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 4 cut(s) 31, 34, 276, 554
PpuMI RGGWCCY 1 cut(s) 172
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 2 cut(s) 261, 562
PspGI CCWGG 2 cut(s) 261, 562
PspN4I GGNNCC 4 cut(s) 174, 215, 250, 598
PspPI GGNCC 2 cut(s) 172, 366
PspPPI RGGWCCY 1 cut(s) 172
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 2 cut(s) 404, 461
RsaNI GTAC 2 cut(s) 403, 460
SaqAI TTAA 3 cut(s) 117, 510, 697
SatI GCNGC 4 cut(s) 30, 33, 275, 553
Sau3AI GATC 1 cut(s) 82
Sau96I GGNCC 2 cut(s) 172, 366
ScrFI CCNGG 3 cut(s) 211, 263, 564
SduI GDGCHC 1 cut(s) 216
SetI ASST 7 cut(s) 31, 62, 69, 337, 408, 510, 525
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 172
Sse9I AATT 2 cut(s) 495, 694
SseBI AGGCCT 1 cut(s) 635
SsiI CCGC 2 cut(s) 242, 439
SspMI CTAG 1 cut(s) 87
StuI AGGCCT 1 cut(s) 635
StyD4I CCNGG 3 cut(s) 209, 261, 562
StyI CCWWGG 1 cut(s) 630
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 316
TasI AATT 2 cut(s) 495, 694
TatI WGTACW 1 cut(s) 459
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 3 cut(s) 117, 510, 697
Tru9I TTAA 3 cut(s) 117, 510, 697
TscAI CASTG 2 cut(s) 136, 594
TseFI GTSAC 3 cut(s) 256, 415, 568
TseI GCWGC 4 cut(s) 29, 32, 274, 552
Tsp45I GTSAC 3 cut(s) 256, 415, 568
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 386
TspRI CASTG 2 cut(s) 136, 594
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 677
XspI CTAG 1 cut(s) 87
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.