Rorug01G0240200

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000366
Physical Location & Seq
Forward (+)
34566324 .. 34567055
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0240200.1

Sequence Viewer

Length: 732 bp
ATGGTGCACACAGATGCTAGATTCGTGGTCGGTGTGGTTGGAAACGTGATCTCTGGTGGCCTTTTCCTCTCCCCAATTCCTACGTTCATACAAATATGGAGAAAAAAAGATGTGGAAGCTTTCGATCCAAAACCTTACCTTACAACAGTATTGAACTGTTTGTTCTGGTGTTACTACGGATTGCCATTCGTTAATCCAAACAGCATTTTAGTTGTCACTATTAATGGAATTGGGCTATTTATAGAGCTCATATATCTTATCATATTCTTCTATTATGCCGCAGCAAAAGGACGAAAGAGGGTTGTTACATACTTTATATGCGAACTTACTTTATTTGGGGCTCTGGTGGCTGCAACTATGTTAGCAATACCTGAGCATAAGATGGTGATGAATCGACGTTTGAGGGCTGTCATAGTTGGTGTGATCTGTGATTTTTTCAATGTTCTTATGTATGGCTCTCCTTTGTTCAACCTGAGAGATGTCATTAAAACTAAGAGTGTGAAATATATGCCGTTCACTCTCTTAGTGGCCAACTTCATGAATGGTTGTTGCTGGACATCCTATGCTCTTATTGGAAAAGTGGACTACTTCATTTTGATTAGCAACGGTCTCGGTGCAATTTTTGGAGCACTTCAATTGATAGTTTATGCAAGATACTACAGAACTACACCAAAAGATGAAGACTTCTCTAGTAAGACTACAAATGAAGTGCAGCTTTGTACTAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

243

Amino Acids

27.48

Weight (kDa)

9.12

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MtN3_slv PF03083 9 - 96 5.4e-22 Sugar efflux transporter for intercellular exchange
MtN3_slv PF03083 138 - 221 9e-22 Sugar efflux transporter for intercellular exchange
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 528
AfaI GTAC 1 cut(s) 721
AgsI TTSAA 4 cut(s) 154, 439, 469, 635
AluBI AGCT 3 cut(s) 119, 247, 715
AluI AGCT 3 cut(s) 119, 247, 715
Alw21I GWGCWC 3 cut(s) 9, 249, 631
Alw26I GTCTC 1 cut(s) 614
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 1 cut(s) 119
AoxI GGCC 2 cut(s) 58, 528
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 3 cut(s) 281, 350, 712
AseI ATTAAT 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 397
BaeGI GKGCMC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 530
BanII GRGCYC 2 cut(s) 249, 343
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 3 cut(s) 9, 249, 631
BbvI GCAGC 3 cut(s) 293, 337, 724
BccI CCATC 1 cut(s) 376
BceAI ACGGC 1 cut(s) 496
BcgI CGANNNNNNTGC 2 cut(s) 592, 626
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 2 cut(s) 18, 690
BfmI CTRYAG 1 cut(s) 658
BisI GCNGC 4 cut(s) 279, 282, 351, 713
BlsI GCNGC 4 cut(s) 280, 283, 352, 714
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 687
Bpu10I CCTNAGC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 614
BseGI GGATG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 363, 464
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 3 cut(s) 293, 337, 724
BsgI GTGCAG 1 cut(s) 731
BshFI GGCC 2 cut(s) 60, 530
BsiHKAI GWGCWC 3 cut(s) 9, 249, 631
BsmAI GTCTC 1 cut(s) 614
BsnI GGCC 2 cut(s) 60, 530
Bso31I GGTCTC 1 cut(s) 614
Bsp1286I GDGCHC 4 cut(s) 9, 249, 343, 631
Bsp143I GATC 3 cut(s) 48, 124, 423
BspACI CCGC 1 cut(s) 279
BspANI GGCC 2 cut(s) 60, 530
BspCNI CTCAG 2 cut(s) 364, 465
BspHI TCATGA 1 cut(s) 537
BspPI GGATC 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 614
BssMI GATC 3 cut(s) 48, 124, 423
Bst4CI ACNGT 3 cut(s) 148, 158, 608
BstDEI CTNAG 4 cut(s) 372, 473, 492, 523
BstF5I GGATG 1 cut(s) 557
BstKTI GATC 3 cut(s) 51, 127, 426
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 3 cut(s) 48, 124, 423
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 658
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 3 cut(s) 293, 337, 724
BstV2I GAAGAC 1 cut(s) 687
BsuRI GGCC 2 cut(s) 60, 530
BtsCI GGATG 1 cut(s) 557
CciI TCATGA 1 cut(s) 537
Csp6I GTAC 1 cut(s) 720
CviAII CATG 1 cut(s) 538
CviQI GTAC 1 cut(s) 720
DdeI CTNAG 4 cut(s) 372, 473, 492, 523
DpnI GATC 3 cut(s) 50, 126, 425
DpnII GATC 3 cut(s) 48, 124, 423
EaeI YGGCCR 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 247
Eco24I GRGCYC 2 cut(s) 249, 343
Eco31I GGTCTC 1 cut(s) 614
Eco53kI GAGCTC 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 247
EcoT38I GRGCYC 2 cut(s) 249, 343
FaeI CATG 1 cut(s) 541
FalI AAGNNNNNCTT 2 cut(s) 699, 731
FatI CATG 1 cut(s) 537
Fnu4HI GCNGC 4 cut(s) 279, 282, 351, 713
FokI GGATG 1 cut(s) 544
FriOI GRGCYC 2 cut(s) 249, 343
Fsp4HI GCNGC 4 cut(s) 279, 282, 351, 713
FspBI CTAG 2 cut(s) 18, 690
GluI GCNGC 4 cut(s) 279, 282, 351, 713
HaeIII GGCC 2 cut(s) 60, 530
Hin1II CATG 1 cut(s) 541
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 2 cut(s) 21, 391
HphI GGTGA 1 cut(s) 397
Hpy166II GTNNAC 3 cut(s) 7, 516, 583
Hpy188III TCNNGA 1 cut(s) 538
Hpy8I GTNNAC 3 cut(s) 7, 516, 583
Hpy99I CGWCG 1 cut(s) 399
HpyCH4III ACNGT 3 cut(s) 148, 158, 608
HpyCH4IV ACGT 3 cut(s) 45, 83, 397
HpyCH4V TGCA 5 cut(s) 7, 353, 617, 650, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 4 cut(s) 372, 473, 492, 523
HpySE526I ACGT 3 cut(s) 45, 83, 397
Hsp92II CATG 1 cut(s) 541
Kzo9I GATC 3 cut(s) 48, 124, 423
LmnI GCTCC 1 cut(s) 626
LpnPI CCDG 6 cut(s) 39, 151, 329, 384, 485, 538
Lsp1109I GCAGC 3 cut(s) 293, 337, 724
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 18, 690
MaeII ACGT 3 cut(s) 45, 83, 397
MaeIII GTNAC 3 cut(s) 170, 214, 304
MalI GATC 3 cut(s) 50, 126, 425
MboI GATC 3 cut(s) 48, 124, 423
MboII GAAGA 2 cut(s) 259, 692
MfeI CAATTG 1 cut(s) 635
MhlI GDGCHC 4 cut(s) 9, 249, 343, 631
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 4 cut(s) 75, 228, 618, 635
MluNI TGGCCA 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 19
MnlI CCTC 3 cut(s) 77, 291, 396
Mox20I TGGCCA 1 cut(s) 530
MscI TGGCCA 1 cut(s) 530
MseI TTAA 3 cut(s) 192, 222, 486
MslI CAYNNNNRTG 1 cut(s) 12
Msp20I TGGCCA 1 cut(s) 530
MunI CAATTG 1 cut(s) 635
MwoI GCNNNNNNNGC 1 cut(s) 347
NdeII GATC 3 cut(s) 48, 124, 423
NlaIII CATG 1 cut(s) 541
NmuCI GTSAC 1 cut(s) 214
PagI TCATGA 1 cut(s) 537
PfeI GAWTC 2 cut(s) 21, 391
PkrI GCNGC 4 cut(s) 280, 283, 352, 714
PshBI ATTAAT 1 cut(s) 222
Psp124BI GAGCTC 1 cut(s) 249
RsaI GTAC 1 cut(s) 721
RsaNI GTAC 1 cut(s) 720
RseI CAYNNNNRTG 1 cut(s) 12
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 3 cut(s) 192, 222, 486
SatI GCNGC 4 cut(s) 279, 282, 351, 713
Sau3AI GATC 3 cut(s) 48, 124, 423
SduI GDGCHC 4 cut(s) 9, 249, 343, 631
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 12
Sse9I AATT 4 cut(s) 75, 228, 618, 635
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 18, 690
SstI GAGCTC 1 cut(s) 249
TaaI ACNGT 3 cut(s) 148, 158, 608
TaiI ACGT 3 cut(s) 48, 86, 400
TaqI TCGA 2 cut(s) 123, 394
TasI AATT 4 cut(s) 75, 228, 618, 635
TatI WGTACW 1 cut(s) 719
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 2 cut(s) 21, 391
Tru1I TTAA 3 cut(s) 192, 222, 486
Tru9I TTAA 3 cut(s) 192, 222, 486
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 3 cut(s) 281, 350, 712
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 7 cut(s) 76, 404, 526, 554, 580, 693, 720
TspGWI ACGGA 1 cut(s) 192
VneI GTGCAC 1 cut(s) 5
VspI ATTAAT 1 cut(s) 222
XspI CTAG 2 cut(s) 18, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.