pycom06g21360

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000366
Physical Location & Seq
Forward (+)
24029962 .. 24031155
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g21360.1

Sequence Viewer

Length: 681 bp
ATGAAAGGAGTTCATTTCCCTGTAACTGCTATTGCCCTATTAGCATTCGCCACCCTCCTTGCCTCTGCCTCTGATCCAAGTCCTCTTCAGGACTTTTGCGTAGCAATTAATAACACCGATCCTGCTGTGTTTGTGAACGGGAAGTTCTGCAAGAACCCAAAACTTGCGTCAGCAAACGATTTCTTCTCTGACAAGCTCCGGAACCCCGGAAACACATCGAATCCGATTGGTTCAATTGTTACGGCAGCAAACGTAGACGATATACCCGGACTCAACACTCTCGGCATATCCTTTGCTCGCTTAGACTTTGCACCAAATGGCCTCAATCCTCCTCACACTCACCCTCGTGCCACGGAGATACTCATAGTCTTGGAAGGCTCACTCTACGTCGGATTCGTCACATCCAATGCCGACGGCAATCGGCTGTTCACCAAAGTGTTGTACAAGGGAGATGTGTTTGTGTTCCCAGTCGGTCTTATTCACTTCCAACTCAATGTCGGAAAAACCAACGGTTTGGCCATCGCGGGTCTCAGCAGCCAGAACCCGGGAGTGATCACCATTGCGAATGCAGTGTTCGGATCCAACCCTCACATCAACCCTGATGTTTTGGCCAAGGCATTCCAGGTGGACGAGAAGGAGGTTGATTATCTTCAGAAACAGTTTTGGTACAACAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

227

Amino Acids

24.22

Weight (kDa)

6.27

Isoelectric Point (pI)

13.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 65 - 214 1.5e-55 Cupin
Cupin_2 PF07883 101 - 169 6.9e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AccII CGCG 1 cut(s) 524
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 1 cut(s) 524
AclWI GGATC 4 cut(s) 68, 113, 573, 586
AcoI YGGCCR 2 cut(s) 516, 609
AcuI CTGAAG 2 cut(s) 71, 635
AfaI GTAC 2 cut(s) 443, 668
AfiI CCNNNNNNNGG 1 cut(s) 544
AgsI TTSAA 1 cut(s) 234
AjnI CCWGG 1 cut(s) 621
AleI CACNNNNGTG 2 cut(s) 345, 434
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 4 cut(s) 68, 113, 573, 586
Ama87I CYCGRG 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 3 cut(s) 319, 516, 609
ApeKI GCWGC 2 cut(s) 245, 534
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AseI ATTAAT 1 cut(s) 108
AsuC2I CCSGG 4 cut(s) 207, 267, 545, 546
AsuHPI GGTGA 3 cut(s) 332, 421, 547
AvaI CYCGRG 1 cut(s) 544
BalI TGGCCA 2 cut(s) 518, 611
BamHI GGATCC 1 cut(s) 578
BauI CACGAG 1 cut(s) 345
BbvI GCAGC 2 cut(s) 257, 546
BccI CCATC 1 cut(s) 527
BceAI ACGGC 2 cut(s) 258, 430
BciT130I CCWGG 1 cut(s) 623
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 4 cut(s) 207, 267, 545, 546
BcoDI GTCTC 1 cut(s) 533
BisI GCNGC 2 cut(s) 246, 535
BlsI GCNGC 2 cut(s) 247, 536
Bme1390I CCNGG 5 cut(s) 207, 267, 545, 546, 623
BmeT110I CYCGRG 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 203, 580
BmrFI CCNGG 5 cut(s) 207, 267, 545, 546, 623
BmrI ACTGGG 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 461
BpuMI CCSGG 4 cut(s) 207, 267, 545, 546
BsaI GGTCTC 1 cut(s) 533
BsaJI CCNNGG 4 cut(s) 205, 351, 544, 612
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 544
Bse1I ACTGG 1 cut(s) 467
Bse3DI GCAATG 1 cut(s) 558
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 4 cut(s) 205, 351, 544, 612
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 1 cut(s) 544
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 544
BseNI ACTGG 1 cut(s) 467
BseRI GAGGAG 1 cut(s) 321
BseXI GCAGC 2 cut(s) 257, 546
Bsh1236I CGCG 1 cut(s) 524
BshFI GGCC 3 cut(s) 321, 518, 611
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 4 cut(s) 199, 207, 267, 545
BslI CCNNNNNNNGG 1 cut(s) 544
BsmAI GTCTC 1 cut(s) 533
BsmI GAATGC 3 cut(s) 44, 571, 617
BsnI GGCC 3 cut(s) 321, 518, 611
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 544
Bsp13I TCCGGA 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 4 cut(s) 73, 118, 552, 578
BspACI CCGC 1 cut(s) 524
BspANI GGCC 3 cut(s) 321, 518, 611
BspCNI CTCAG 1 cut(s) 543
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 1 cut(s) 524
BspLI GGNNCC 2 cut(s) 203, 580
BspPI GGATC 4 cut(s) 68, 113, 573, 586
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 558
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 1 cut(s) 467
BssECI CCNNGG 4 cut(s) 205, 351, 544, 612
BssMI GATC 4 cut(s) 73, 118, 552, 578
BssSI CACGAG 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 512, 660
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 301, 530
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 401
BstFNI CGCG 1 cut(s) 524
BstKTI GATC 4 cut(s) 76, 121, 555, 581
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 4 cut(s) 73, 118, 552, 578
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 5 cut(s) 205, 265, 543, 544, 621
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 2 cut(s) 257, 546
BstX2I RGATCY 1 cut(s) 578
BstXI CCANNNNNNTGG 1 cut(s) 514
BstYI RGATCY 1 cut(s) 578
BsuRI GGCC 3 cut(s) 321, 518, 611
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 505
BtsCI GGATG 1 cut(s) 401
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 1 cut(s) 298
Cfr9I CCCGGG 1 cut(s) 544
CseI GACGC 1 cut(s) 156
Csp6I GTAC 2 cut(s) 442, 667
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviJI RGCY 7 cut(s) 196, 321, 378, 424, 518, 537, 611
CviKI_1 RGCY 7 cut(s) 196, 321, 378, 424, 518, 537, 611
CviQI GTAC 2 cut(s) 442, 667
DdeI CTNAG 2 cut(s) 301, 530
DpnI GATC 4 cut(s) 75, 120, 554, 580
DpnII GATC 4 cut(s) 73, 118, 552, 578
EaeI YGGCCR 2 cut(s) 516, 609
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 533
Eco57I CTGAAG 2 cut(s) 71, 635
Eco88I CYCGRG 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaiI YATR 3 cut(s) 263, 287, 365
FauI CCCGC 1 cut(s) 517
FbaI TGATCA 1 cut(s) 552
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 246, 535
FokI GGATG 1 cut(s) 388
Fsp4HI GCNGC 2 cut(s) 246, 535
GluI GCNGC 2 cut(s) 246, 535
HaeIII GGCC 3 cut(s) 321, 518, 611
HapII CCGG 4 cut(s) 199, 207, 267, 545
HgaI GACGC 1 cut(s) 156
HinfI GANTC 3 cut(s) 220, 270, 393
HpaII CCGG 4 cut(s) 199, 207, 267, 545
HphI GGTGA 3 cut(s) 332, 421, 547
Hpy166II GTNNAC 4 cut(s) 136, 256, 429, 628
Hpy188I TCNGA 7 cut(s) 73, 190, 225, 392, 500, 578, 654
Hpy188III TCNNGA 2 cut(s) 89, 199
Hpy8I GTNNAC 4 cut(s) 136, 256, 429, 628
Hpy99I CGWCG 2 cut(s) 392, 416
HpyAV CCTTC 2 cut(s) 368, 628
HpyCH4III ACNGT 2 cut(s) 512, 660
HpyCH4IV ACGT 2 cut(s) 252, 387
HpyCH4V TGCA 3 cut(s) 150, 311, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 301, 530
HpySE526I ACGT 2 cut(s) 252, 387
Kpn2I TCCGGA 1 cut(s) 198
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 4 cut(s) 73, 118, 552, 578
LmnI GCTCC 1 cut(s) 201
Lsp1109I GCAGC 2 cut(s) 257, 546
MaeII ACGT 2 cut(s) 252, 387
MaeIII GTNAC 3 cut(s) 22, 238, 397
MalI GATC 4 cut(s) 75, 120, 554, 580
MboI GATC 4 cut(s) 73, 118, 552, 578
MboII GAAGA 3 cut(s) 77, 175, 641
MfeI CAATTG 1 cut(s) 234
MflI RGATCY 1 cut(s) 578
MlsI TGGCCA 2 cut(s) 518, 611
MluCI AATT 2 cut(s) 105, 234
MluNI TGGCCA 2 cut(s) 518, 611
MlyI GAGTC 1 cut(s) 264
MmeI TCCRAC 4 cut(s) 370, 478, 511, 606
Mox20I TGGCCA 2 cut(s) 518, 611
MroI TCCGGA 1 cut(s) 198
MscI TGGCCA 2 cut(s) 518, 611
MseI TTAA 2 cut(s) 108, 679
MslI CAYNNNNRTG 2 cut(s) 345, 434
Msp20I TGGCCA 2 cut(s) 518, 611
MspI CCGG 4 cut(s) 199, 207, 267, 545
MspR9I CCNGG 5 cut(s) 207, 267, 545, 546, 623
MunI CAATTG 1 cut(s) 234
Mva1269I GAATGC 3 cut(s) 44, 571, 617
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 4 cut(s) 207, 267, 545, 546
NdeII GATC 4 cut(s) 73, 118, 552, 578
NlaIV GGNNCC 2 cut(s) 203, 580
NmeAIII GCCGAG 1 cut(s) 261
NmuCI GTSAC 1 cut(s) 397
OliI CACNNNNGTG 2 cut(s) 345, 434
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 3 cut(s) 44, 571, 617
PfeI GAWTC 2 cut(s) 220, 393
PkrI GCNGC 2 cut(s) 247, 536
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 2 cut(s) 203, 580
PsuI RGATCY 1 cut(s) 578
RsaI GTAC 2 cut(s) 443, 668
RsaNI GTAC 2 cut(s) 442, 667
RseI CAYNNNNRTG 2 cut(s) 345, 434
SaqAI TTAA 2 cut(s) 108, 679
SatI GCNGC 2 cut(s) 246, 535
Sau3AI GATC 4 cut(s) 73, 118, 552, 578
SchI GAGTC 1 cut(s) 264
ScrFI CCNGG 5 cut(s) 207, 267, 545, 546, 623
SetI ASST 5 cut(s) 198, 255, 390, 627, 642
SmaI CCCGGG 1 cut(s) 546
SmiMI CAYNNNNRTG 2 cut(s) 345, 434
Sse9I AATT 2 cut(s) 105, 234
SsiI CCGC 1 cut(s) 524
StyD4I CCNGG 5 cut(s) 205, 265, 543, 544, 621
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 512, 660
TaiI ACGT 2 cut(s) 255, 390
TaqI TCGA 1 cut(s) 218
TaqII GACCGA 1 cut(s) 461
TasI AATT 2 cut(s) 105, 234
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 2 cut(s) 220, 393
Tru1I TTAA 2 cut(s) 108, 679
Tru9I TTAA 2 cut(s) 108, 679
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 2 cut(s) 245, 534
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 368
TspMI CCCGGG 1 cut(s) 544
TspRI CASTG 1 cut(s) 576
VspI ATTAAT 1 cut(s) 108
XmaI CCCGGG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.