MD10G1023100.v1.1

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000366
Physical Location & Seq
Reverse (-)
2906382 .. 2906765
384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1023100.v1.1.491

Sequence Viewer

Length: 384 bp
ATGAATTTCTTTTTTTCTGGGATTCAAATTCCAAGAAGCACACAAAATCCGTTGGGTTCAACGGTAACACCTGCTAATGTGGATCAAATAACAGGACTAAACATTCTCGGCATATCCCTAGCTCGCATAGACTTTGCACCAAATGGCCTAAACCCTCCCTACACTCACCCTCGCGGCACGGAAATCCTTTTTCTCCAGGAAGGTACACTCTACGTTGGGTTCGTAACGTCCAACCTAGATAATCGTCTATTCACCAAGGTGTTGAACAAGGGAGATGTGTTTGTGTTCCCAGTTGGTCTTATTCACTTCCAACTGAATTGGGACATACCAGTGCTGTCGCCATTGCTGGTCTTAGCAGCCAGAACCCAGGAGTCATCACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

128

Amino Acids

13.95

Weight (kDa)

6.02

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 7 - 106 2.7e-33 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
AccII CGCG 1 cut(s) 174
AciI CCGC 1 cut(s) 174
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 2 cut(s) 4, 27
AfaI GTAC 1 cut(s) 205
AgsI TTSAA 3 cut(s) 26, 60, 265
AjnI CCWGG 2 cut(s) 195, 366
AleI CACNNNNGTG 1 cut(s) 257
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AlwI GGATC 1 cut(s) 90
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 2 cut(s) 4, 27
AsuHPI GGTGA 3 cut(s) 158, 244, 369
BbvI GCAGC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 197, 368
BfaI CTAG 2 cut(s) 119, 236
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 2 cut(s) 175, 357
BlsI GCNGC 2 cut(s) 176, 358
Bme1390I CCNGG 2 cut(s) 197, 368
BmrFI CCNGG 2 cut(s) 197, 368
BmrI ACTGGG 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 255, 366
Bse1I ACTGG 2 cut(s) 290, 329
Bse3DI GCAATG 1 cut(s) 341
BseBI CCWGG 2 cut(s) 197, 368
BseDI CCNNGG 2 cut(s) 255, 366
BseMI GCAATG 1 cut(s) 341
BseNI ACTGG 2 cut(s) 290, 329
BseXI GCAGC 1 cut(s) 368
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 335
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 174
BspANI GGCC 1 cut(s) 147
BspFNI CGCG 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 341
BsrI ACTGG 2 cut(s) 290, 329
BssECI CCNNGG 2 cut(s) 255, 366
BssMI GATC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 197, 368
Bst4CI ACNGT 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 1 cut(s) 85
BstMBI GATC 1 cut(s) 82
BstNI CCWGG 2 cut(s) 197, 368
BstSCI CCNGG 2 cut(s) 195, 366
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 368
BsuRI GGCC 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 336
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 204
CviJI RGCY 3 cut(s) 122, 147, 359
CviKI_1 RGCY 3 cut(s) 122, 147, 359
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 352
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 195, 366
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaiI YATR 4 cut(s) 113, 128, 326, 382
FaqI GGGAC 1 cut(s) 335
Fnu4HI GCNGC 2 cut(s) 175, 357
Fsp4HI GCNGC 2 cut(s) 175, 357
FspBI CTAG 2 cut(s) 119, 236
GluI GCNGC 2 cut(s) 175, 357
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 147
HinfI GANTC 2 cut(s) 22, 371
HphI GGTGA 3 cut(s) 158, 244, 369
Hpy166II GTNNAC 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 206
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 64
HpyCH4IV ACGT 2 cut(s) 213, 227
HpyCH4V TGCA 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 352
HpySE526I ACGT 2 cut(s) 213, 227
Kzo9I GATC 1 cut(s) 82
Lsp1109I GCAGC 1 cut(s) 368
MaeI CTAG 2 cut(s) 119, 236
MaeII ACGT 2 cut(s) 213, 227
MaeIII GTNAC 2 cut(s) 64, 223
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MluCI AATT 3 cut(s) 4, 27, 316
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 2 cut(s) 255, 334
MnlI CCTC 2 cut(s) 165, 180
MslI CAYNNNNRTG 2 cut(s) 257, 329
MspR9I CCNGG 2 cut(s) 197, 368
MvaI CCWGG 2 cut(s) 197, 368
MvnI CGCG 1 cut(s) 174
NdeII GATC 1 cut(s) 82
NmeAIII GCCGAG 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 257
PaqCI CACCTGC 1 cut(s) 79
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 1 cut(s) 22
PfoI TCCNGGA 1 cut(s) 195
PkrI GCNGC 2 cut(s) 176, 358
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 2 cut(s) 195, 366
PspGI CCWGG 2 cut(s) 195, 366
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 2 cut(s) 257, 329
SatI GCNGC 2 cut(s) 175, 357
Sau3AI GATC 1 cut(s) 82
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 197, 368
SetI ASST 7 cut(s) 73, 124, 205, 216, 230, 237, 261
SmiMI CAYNNNNRTG 2 cut(s) 257, 329
Sse9I AATT 3 cut(s) 4, 27, 316
SsiI CCGC 1 cut(s) 174
SspMI CTAG 2 cut(s) 119, 236
StyD4I CCNGG 2 cut(s) 195, 366
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 64
TaiI ACGT 2 cut(s) 216, 230
TasI AATT 3 cut(s) 4, 27, 316
TauI GCSGC 1 cut(s) 177
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 1 cut(s) 336
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 39, 194
TspRI CASTG 1 cut(s) 336
XapI RAATTY 2 cut(s) 4, 27
XspI CTAG 2 cut(s) 119, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.