Rorug06G0407200

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000366
Physical Location & Seq
Forward (+)
55043092 .. 55044113
1022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0407200.1

Sequence Viewer

Length: 270 bp
ATGATTTCTATTAGAACTTTGTCAAGAAGTGAGAACCCACAATTGGAAGAAGATAAACTACTTGGCAGAGGAATACCAGAAGGTCTGAATGTGGAATCTCCTCCTCAGTACAGAAATGCATATCAACCTATCCCAAGGAAAGATCAGCAAAGAGTGTCCTTGATCTTTTGGGTGCATGCTGAGGACACCATCCATCTTGAGTCCAGAAATTTTACTGTGTCAAGTGGGAAGTATGTGGACTCTGCAATCATGACTCATGCAGAGCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

6.27

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 265
AciI CCGC 1 cut(s) 265
AcsI RAATTY 1 cut(s) 208
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 43
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
ApoI RAATTY 1 cut(s) 208
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BbvCI CCTCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 197, 201
Bpu10I CCTNAGC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 119, 171
BseRI GAGGAG 2 cut(s) 90, 93
BslI CCNNNNNNNGG 1 cut(s) 43
Bsp143I GATC 2 cut(s) 142, 162
BspACI CCGC 1 cut(s) 265
BspCNI CTCAG 2 cut(s) 118, 172
BspHI TCATGA 1 cut(s) 249
BsrBI CCGCTC 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 2 cut(s) 142, 162
BssT1I CCWWGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 105, 180
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 2 cut(s) 145, 165
BstMBI GATC 2 cut(s) 142, 162
BstNSI RCATGY 1 cut(s) 179
BtsCI GGATG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 1 cut(s) 249
Csp6I GTAC 1 cut(s) 109
CviAII CATG 3 cut(s) 176, 250, 257
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 105, 180
DpnI GATC 2 cut(s) 144, 164
DpnII GATC 2 cut(s) 142, 162
Eco130I CCWWGG 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 134
FaeI CATG 3 cut(s) 179, 253, 260
FaiI YATR 5 cut(s) 121, 177, 234, 251, 258
FatI CATG 3 cut(s) 175, 249, 256
FokI GGATG 1 cut(s) 176
Hin1II CATG 3 cut(s) 179, 253, 260
HinfI GANTC 4 cut(s) 95, 200, 239, 253
Hpy166II GTNNAC 1 cut(s) 238
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 4 cut(s) 24, 197, 204, 250
Hpy8I GTNNAC 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 4 cut(s) 119, 175, 245, 260
HpyF3I CTNAG 2 cut(s) 105, 180
Hsp92II CATG 3 cut(s) 179, 253, 260
Kzo9I GATC 2 cut(s) 142, 162
LpnPI CCDG 2 cut(s) 90, 217
MalI GATC 2 cut(s) 144, 164
MbiI CCGCTC 1 cut(s) 265
MboI GATC 2 cut(s) 142, 162
MboII GAAGA 2 cut(s) 59, 62
MfeI CAATTG 1 cut(s) 41
MluCI AATT 2 cut(s) 41, 208
MlyI GAGTC 3 cut(s) 209, 233, 247
MnlI CCTC 4 cut(s) 62, 111, 114, 175
Mph1103I ATGCAT 1 cut(s) 121
MunI CAATTG 1 cut(s) 41
NdeII GATC 2 cut(s) 142, 162
NlaIII CATG 3 cut(s) 179, 253, 260
NsiI ATGCAT 1 cut(s) 121
NspI RCATGY 1 cut(s) 179
PaeI GCATGC 1 cut(s) 179
PagI TCATGA 1 cut(s) 249
PfeI GAWTC 1 cut(s) 95
PleI GAGTC 3 cut(s) 208, 233, 247
PpsI GAGTC 3 cut(s) 208, 233, 247
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
Sau3AI GATC 2 cut(s) 142, 162
SchI GAGTC 3 cut(s) 209, 233, 247
SetI ASST 2 cut(s) 85, 130
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 179
Sse9I AATT 2 cut(s) 41, 208
SsiI CCGC 1 cut(s) 265
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 217
TasI AATT 2 cut(s) 41, 208
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 95
XapI RAATTY 1 cut(s) 208
XceI RCATGY 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.