pycom14g20440

Germin-like protein subfamily 1 member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000366
Physical Location & Seq
Reverse (-)
21491792 .. 21492731
940 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g20440.1

Sequence Viewer

Length: 690 bp
ATGAAAGGAGTTAATTTCCCTGTAACTGCTGTTGCCCTTTTAGTATTAGCATTCGCCACCCTCCTTGCCTCTGCCTCTGATCCCAGTCCTCTTCAGGACTTTTGCGTAGCAATTAATAACACTGATTCTGCTGCAGTGTTCGTGAACGGGAAGTTCTGCAAGAACCCAAAACTTGCATCAGCAAACGATTTCTTCTCTGACAAGCTCCGGTACCCCGGAAACACATCGAATCCGGTCGGTTCAATTGTCACGGCGGCAAACGTGGATGATATACCCGGACTCAACACTCTCGGCATATCCTTTGCTCGCGTAGACTTTGCACCAAATGGCCTCAACCCTCCTCACACTCACCCTCGAGCCACGGAGATCCTCATAGTCTTGGAAGGTTCACTCTACGTCGGATTTGTCACATCCAATGGCGACGGCAATCGGCTGTTCACTAAAGTGTTGTACAAGGGAGATGTGTTTGTATTCCCAATCGGTCTCATTCACTTCCAACTTAATGTCGGAAAAACCAACGCTTTGGCCATCGCCGGTCTCAGCAGCCAGAACCCAGGAGTGATCACCATTGCGAACGCAGTCTTCGGATCCAACCCTCCCATCAACCCTGATGTTTTGGCCAAGGCATTCCAGGTGGACGATAATGTGGTTGATTATCTTCAGAAACAGTTTTGGTACAATAACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

230

Amino Acids

24.34

Weight (kDa)

5.83

Isoelectric Point (pI)

11.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 69 - 217 2.3e-56 Cupin
Cupin_2 PF07883 103 - 174 7e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000366)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05950 AT5G38930 AT5G38940 AT5G38940 AT5G39130 AT5G39160 AT5G39160 AT5G39160 AT5G39190 AT5G39190
fragaria_vesca FvH4_2g10250 FvH4_3g20400 FvH4_5g18050 FvH4_5g18070 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18460 FvH4_5g18470
malus_domestica MD06G1238100.v1.1 MD10G1022500.v1.1 MD10G1022600.v1.1 MD10G1022900.v1.1 MD10G1023100.v1.1 MD10G1023500.v1.1 MD14G1243000.v1.1 MD14G1243100.v1.1
prunus_persica Prupe.5G240700_v2.0.a1 Prupe.8G025500_v2.0.a1 Prupe.8G025600_v2.0.a1 Prupe.8G025700_v2.0.a1 Prupe.8G025800_v2.0.a1 Prupe.8G025900_v2.0.a1 Prupe.8G035600_v2.0.a1 Prupe.8G035700_v2.0.a1 Prupe.8G035800_v2.0.a1 Prupe.8G035900_v2.0.a1 Prupe.8G048300_v2.0.a1
pyrus_communis pycom06g21150 pycom06g21360 pycom06g21370 pycom14g09160 pycom14g09170 pycom14g20410 pycom14g20430 pycom14g20440
rosa_chinensis RchiOBHm_Chr1g0318151 RchiOBHm_Chr1g0354011 RchiOBHm_Chr1g0354031 RchiOBHm_Chr5g0034291 RchiOBHm_Chr7g0177551
rosa_laevigata RLG00000017504 RLG00000028234 RLG00000028236 RLG00000033537
rosa_multiflora Rmu_sc0004015.1_g000016 Rmu_sc0011424.1_g000001 Rmu_sc0011424.1_g000017 Rmu_sc0022466.1_g000003 Rmu_sc0033434.1_g000011 Rmu_ssc0000330.1_g000005 Rmu_ssc0000330.1_g000011
rosa_roxburghii Rroxscaffold_1G00045980 Rroxscaffold_2G00137150 Rroxscaffold_3G00275760 Rroxscaffold_4G00301290 Rroxscaffold_4G00301300 Rroxscaffold_4G00301320 Rroxscaffold_4G00301340 Rroxscaffold_4G00329570 Rroxscaffold_4G00329610 Rroxscaffold_4G00329760 Rroxscaffold_4G00329840 Rroxscaffold_4G00329920
rosa_rugosa Rorug01G0240100 Rorug01G0240200 Rorug01G0240500 Rorug06G0407200 Rorug06G0407300
rosa_samantha Rh1AG031100 Rh1AG251500 Rh1BG223100 Rh1CG029900 Rh1CG235700 Rh1CG235900 Rh1DG250000 Rh2BG197800 Rh5AG236600 Rh5BG237100 Rh5CG266900 Rh5DG244600 Rh7AG006500 Rh7BG006500 Rh7CG006900 Rh7CG007000 Rh7DG006500 Rh7DG006600
rosa_wichuraiana Rw1G002460 Rw1G002500 Rw1G021930 Rw2G014580 Rw7G000540 Rw7G000560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccI GTMKAC 1 cut(s) 312
AccII CGCG 1 cut(s) 309
AciI CCGC 1 cut(s) 254
AclWI GGATC 4 cut(s) 74, 361, 582, 595
AcoI YGGCCR 2 cut(s) 525, 618
AcuI CTGAAG 2 cut(s) 77, 644
AfaI GTAC 3 cut(s) 212, 452, 677
AgsI TTSAA 1 cut(s) 243
AjnI CCWGG 2 cut(s) 553, 630
AleI CACNNNNGTG 1 cut(s) 443
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 2 cut(s) 488, 542
AlwI GGATC 4 cut(s) 74, 361, 582, 595
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 3 cut(s) 328, 525, 618
ApeKI GCWGC 2 cut(s) 131, 543
AseI ATTAAT 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 210
AsuC2I CCSGG 2 cut(s) 216, 276
AsuHPI GGTGA 2 cut(s) 341, 556
AvaI CYCGRG 1 cut(s) 354
BalI TGGCCA 2 cut(s) 527, 620
BamHI GGATCC 1 cut(s) 587
BanI GGYRCC 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 118, 555
BccI CCATC 2 cut(s) 536, 608
BceAI ACGGC 2 cut(s) 267, 439
BciT130I CCWGG 2 cut(s) 555, 632
BclI TGATCA 1 cut(s) 561
BcnI CCSGG 2 cut(s) 216, 276
BcoDI GTCTC 2 cut(s) 488, 542
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 3 cut(s) 132, 255, 544
BlsI GCNGC 3 cut(s) 133, 256, 545
Bme1390I CCNGG 4 cut(s) 216, 276, 555, 632
BmeT110I CYCGRG 1 cut(s) 354
BmiI GGNNCC 2 cut(s) 212, 589
BmrFI CCNGG 4 cut(s) 216, 276, 555, 632
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 185
BmuI ACTGGG 1 cut(s) 78
BpiI GAAGAC 1 cut(s) 574
BpuMI CCSGG 2 cut(s) 216, 276
BsaI GGTCTC 2 cut(s) 488, 542
BsaJI CCNNGG 4 cut(s) 214, 360, 553, 621
BsaWI WCCGGW 2 cut(s) 207, 232
Bse118I RCCGGY 1 cut(s) 533
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 2 cut(s) 555, 632
BseDI CCNNGG 4 cut(s) 214, 360, 553, 621
BseGI GGATG 2 cut(s) 271, 410
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 553
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 2 cut(s) 118, 555
Bsh1236I CGCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 330, 527, 620
BshNI GGYRCC 1 cut(s) 210
BsiEI CGRYCG 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 5 cut(s) 208, 216, 233, 276, 534
BsmAI GTCTC 2 cut(s) 488, 542
BsmI GAATGC 2 cut(s) 50, 626
BsnI GGCC 3 cut(s) 330, 527, 620
Bso31I GGTCTC 2 cut(s) 488, 542
BsoBI CYCGRG 1 cut(s) 354
Bsp1407I TGTACA 1 cut(s) 450
Bsp143I GATC 4 cut(s) 79, 366, 561, 587
BspACI CCGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 330, 527, 620
BspCNI CTCAG 1 cut(s) 552
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 2 cut(s) 212, 589
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 4 cut(s) 74, 361, 582, 595
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 488, 542
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 533
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 1 cut(s) 84
BssAI RCCGGY 1 cut(s) 533
BssECI CCNNGG 4 cut(s) 214, 360, 553, 621
BssMI GATC 4 cut(s) 79, 366, 561, 587
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 2 cut(s) 555, 632
Bst4CI ACNGT 2 cut(s) 669, 686
Bst6I CTCTTC 1 cut(s) 96
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 1 cut(s) 539
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 271, 410
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 4 cut(s) 82, 369, 564, 590
BstMAI GTCTC 2 cut(s) 488, 542
BstMBI GATC 4 cut(s) 79, 366, 561, 587
BstMCI CGRYCG 1 cut(s) 237
BstNI CCWGG 2 cut(s) 555, 632
BstSCI CCNGG 4 cut(s) 214, 274, 553, 630
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 118, 555
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 2 cut(s) 366, 587
BstXI CCANNNNNNTGG 1 cut(s) 523
BstYI RGATCY 2 cut(s) 366, 587
BsuRI GGCC 3 cut(s) 330, 527, 620
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 514
BtsCI GGATG 2 cut(s) 271, 410
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 2 cut(s) 120, 141
Cac8I GCNNGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 533
Csp6I GTAC 3 cut(s) 211, 451, 676
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviJI RGCY 7 cut(s) 205, 330, 359, 433, 527, 546, 620
CviKI_1 RGCY 7 cut(s) 205, 330, 359, 433, 527, 546, 620
CviQI GTAC 3 cut(s) 211, 451, 676
DdeI CTNAG 1 cut(s) 539
DpnI GATC 4 cut(s) 81, 368, 563, 589
DpnII GATC 4 cut(s) 79, 366, 561, 587
EaeI YGGCCR 2 cut(s) 525, 618
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 621
Eco31I GGTCTC 2 cut(s) 488, 542
Eco57I CTGAAG 2 cut(s) 77, 644
Eco88I CYCGRG 1 cut(s) 354
EcoRII CCWGG 2 cut(s) 553, 630
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaiI YATR 3 cut(s) 272, 296, 374
FbaI TGATCA 1 cut(s) 561
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 132, 255, 544
FokI GGATG 2 cut(s) 278, 397
Fsp4HI GCNGC 3 cut(s) 132, 255, 544
GluI GCNGC 3 cut(s) 132, 255, 544
HaeIII GGCC 3 cut(s) 330, 527, 620
HapII CCGG 5 cut(s) 208, 216, 233, 276, 534
HinfI GANTC 3 cut(s) 125, 229, 279
HpaII CCGG 5 cut(s) 208, 216, 233, 276, 534
HphI GGTGA 2 cut(s) 341, 556
Hpy166II GTNNAC 5 cut(s) 145, 313, 389, 438, 637
Hpy188I TCNGA 6 cut(s) 79, 199, 401, 509, 587, 663
Hpy188III TCNNGA 2 cut(s) 95, 142
Hpy8I GTNNAC 5 cut(s) 145, 313, 389, 438, 637
Hpy99I CGWCG 2 cut(s) 401, 425
HpyAV CCTTC 1 cut(s) 377
HpyCH4III ACNGT 2 cut(s) 669, 686
HpyCH4IV ACGT 2 cut(s) 261, 396
HpyCH4V TGCA 4 cut(s) 134, 159, 176, 320
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 261, 396
KpnI GGTACC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 4 cut(s) 79, 366, 561, 587
LmnI GCTCC 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 118, 555
LweI GCATC 1 cut(s) 185
MaeII ACGT 2 cut(s) 261, 396
MaeIII GTNAC 3 cut(s) 22, 247, 406
MalI GATC 4 cut(s) 81, 368, 563, 589
MboI GATC 4 cut(s) 79, 366, 561, 587
MboII GAAGA 4 cut(s) 83, 184, 574, 650
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 366, 587
MlsI TGGCCA 2 cut(s) 527, 620
MluCI AATT 3 cut(s) 13, 111, 243
MluNI TGGCCA 2 cut(s) 527, 620
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 4 cut(s) 379, 487, 520, 615
Mox20I TGGCCA 2 cut(s) 527, 620
MscI TGGCCA 2 cut(s) 527, 620
MseI TTAA 4 cut(s) 12, 114, 501, 688
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 2 cut(s) 527, 620
MspI CCGG 5 cut(s) 208, 216, 233, 276, 534
MspR9I CCNGG 4 cut(s) 216, 276, 555, 632
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 2 cut(s) 50, 626
MvaI CCWGG 2 cut(s) 555, 632
MvnI CGCG 1 cut(s) 309
NciI CCSGG 2 cut(s) 216, 276
NdeII GATC 4 cut(s) 79, 366, 561, 587
NlaIV GGNNCC 2 cut(s) 212, 589
NmeAIII GCCGAG 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 247, 406
OliI CACNNNNGTG 1 cut(s) 443
PaeR7I CTCGAG 1 cut(s) 354
PctI GAATGC 2 cut(s) 50, 626
PfeI GAWTC 2 cut(s) 125, 229
PkrI GCNGC 3 cut(s) 133, 256, 545
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PshBI ATTAAT 1 cut(s) 114
Psp6I CCWGG 2 cut(s) 553, 630
PspGI CCWGG 2 cut(s) 553, 630
PspN4I GGNNCC 2 cut(s) 212, 589
PspXI VCTCGAGB 1 cut(s) 354
PstI CTGCAG 1 cut(s) 136
PsuI RGATCY 2 cut(s) 366, 587
RsaI GTAC 3 cut(s) 212, 452, 677
RsaNI GTAC 3 cut(s) 211, 451, 676
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 4 cut(s) 12, 114, 501, 688
SatI GCNGC 3 cut(s) 132, 255, 544
Sau3AI GATC 4 cut(s) 79, 366, 561, 587
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 4 cut(s) 216, 276, 555, 632
SetI ASST 5 cut(s) 207, 264, 388, 399, 636
SfaNI GCATC 1 cut(s) 185
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 3 cut(s) 13, 111, 243
SsiI CCGC 1 cut(s) 254
StyD4I CCNGG 4 cut(s) 214, 274, 553, 630
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 669, 686
TaiI ACGT 2 cut(s) 264, 399
TaqI TCGA 2 cut(s) 227, 355
TaqII GACCGA 1 cut(s) 470
TasI AATT 3 cut(s) 13, 111, 243
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 2 cut(s) 125, 229
Tru1I TTAA 4 cut(s) 12, 114, 501, 688
Tru9I TTAA 4 cut(s) 12, 114, 501, 688
TscAI CASTG 2 cut(s) 127, 141
TseFI GTSAC 2 cut(s) 247, 406
TseI GCWGC 2 cut(s) 131, 543
Tsp45I GTSAC 2 cut(s) 247, 406
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 377
TspRI CASTG 2 cut(s) 127, 141
VspI ATTAAT 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.